Published March 19, 2025 | Version v2

SINGER-inferred targets for exceptional population differentiation in coalescence times in African populations in 1000 Genomes Project

Authors/Creators

  • 1. ROR icon University of California, Berkeley

Description

This repo saves the gene targets which shows the signal of population differentiation in coalescence times in African populations in 1000 Genomes Project. 

Here are the detailed explanations for the header of the files:

chrom               The chromosome where the genomic window is located (e.g., chr1, chrX).
window_start        The 0-based start position of the genomic window being analyzed.
window_end          The 1-based end position of the genomic window (exclusive).
score               Ratio between the overall diversity and the population specific diversity, in the genomic window.
transcript_chrom    The chromosome where the transcript is located.
transcript_start    The 0-based start position of the transcript.
transcript_end      The 1-based end position of the transcript (exclusive).
transcript_id       The unique identifier for the transcript (e.g., Ensembl or RefSeq ID).
strand              The strand of the transcript: "+" for forward, "-" for reverse.
coding_start        The start position of the coding region of the transcript (if applicable).
coding_end          The end position of the coding region of the transcript (if applicable).
RGB                 The RGB color used for visualization in genome browsers (format: R,G,B).
block_count         The number of exons in the transcript.
block_sizes         Comma-separated list of exon lengths (in base pairs).
block_starts        Comma-separated list of exon start positions relative to transcript_start.

Files

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