Published July 9, 2014 | Version v1
Software Open

GaussDCA.jl - First release

Authors/Creators

  • 1. Department of Applied Science and Technology and Center for Computational Sciences, Politecnico di Torino, Torino, Italy; Human Genetics Foundation-Torino, Torino, Italy
  • 2. Department of Applied Science and Technology and Center for Computational Sciences, Politecnico di Torino, Torino, Italy; Human Genetics Foundation-Torino, Torino, Italy
  • 3. Sorbonne Universités, Université Pierre et Marie Curie Paris 06, UMR 7238, Computational and Quantitative Biology, Paris, France; Centre National de la Recherche Scientifique, UMR 7238, Computational and Quantitative Biology, Paris, France
  • 4. Department of Applied Science and Technology and Center for Computational Sciences, Politecnico di Torino, Torino, Italy
  • 5. Human Genetics Foundation-Torino, Torino, Italy

Description

This is the code which accompanies the paper "Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners" by Carlo Baldassi, Marco Zamparo, Christoph Feinauer, Andrea Procaccini, Riccardo Zecchina, Martin Weigt and Andrea Pagnani, (2014) PLoS ONE 9(3): e92721. doi:10.1371/journal.pone.0092721

This version contain minor bugfixes with respect to what was described in the paper.

Files

GaussDCA.jl-v1.0.0.zip

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Additional details

Related works

Is supplement to
https://github.com/carlobaldassi/GaussDCA.jl/tree/v1.0.0 (URL)
10.1371/journal.pone.0092721 (DOI)

Funding

European Commission
NETADIS - Statistical Physics Approaches to Networks Across Disciplines 290038
European Commission
OPTINF - Optimization and inference algorithms from the theory of disordered systems: theoretical challenges and applications to large-scale inverse problems in systems biology 267915