Published March 8, 2024
| Version v1
Dataset
Open
Single-character insertion-deletion model preserves long indels in ancestral sequence reconstruction
Authors/Creators
- 1. University of Neuchatel
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2.
ZHAW Zurich University of Applied Sciences
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3.
SIB Swiss Institute of Bioinformatics
Description
This dataset contains the data used in the paper entitled: "Single-character insertion-deletion model preserves long indels in ancestral sequence reconstruction". The data contains protein sequences of 6 mammals from the OMA repository and reconstructed ancestral sequences of the mentioned proteins using ARPIP. Morevoer, this dataset contains small subset of protein and their ancestral sequences using INDELible. We have performed ancestral sequence reconstruction using ARPIP on simulated data.
Files
data_single_char_ indel_model_preserves_long_indels_in_ASR.zip
Additional details
Funding
- Swiss National Science Foundation
- Frequentist estimation of the evolutionary history of sequences with substitutions and indels 31003A_176316
- Swiss National Science Foundation
- Inferring the molecular evolutionary history with multiple-character indels: from theory to practice 315230_215379