DArTseq genetic dataset associated with the article "Hybrids as mirrors of the past: genomic footprints reveal spatio-temporal dynamics and extinction risk of alpine extremophytes in the mountains of Central Asia"

Description: This file stores genetic information on the single nucleotide polymorphism markers (SNPs) in the examined alkali grasses (Poaceae: Puccinellia). The dataset was generetad by Genome-Wide Restriction Fragment Analysis via the DArTseq platform (Diversity Arrays Technology Pty Ltd, Canberra, Australia), which combines complexity reduction methods, fragment size selection, and high-throughput sequencing, optimised for a target organism. The file contains raw data.
 
Usage notes: We used R (version 4.2.2, 2022-10-31; https://www.R-project.org/) and RStudio (version 2022.07.2+576 "Spotted Wakerobin" Release (e7373ef832b49b2a9b88162cfe7eac5f22c40b34, 2022-09-06; http://www.rstudio.com/) on Windows 8.1 to handle this file. We used the dartR R-package (version 2.7.2) with necessary dependencies to import, proccess and analyse this data file as an object of a class genlight (dartR) in the R environment. You may also handle the file as an object of a class genlight using the adegenet and ade4 R-packages. To learn more about installation procedure and how to use of the R-packages visit: https://cran.r-project.org/web/packages/available_packages_by_name.html.