Published October 23, 2007
| Version 11736
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A Maximum Parsimony Model to Reconstruct Phylogenetic Network in Honey Bee Evolution
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Phylogenies ; The evolutionary histories of groups of
species are one of the most widely used tools throughout the life
sciences, as well as objects of research with in systematic,
evolutionary biology. In every phylogenetic analysis reconstruction
produces trees. These trees represent the evolutionary histories of
many groups of organisms, bacteria due to horizontal gene transfer
and plants due to process of hybridization. The process of gene
transfer in bacteria and hybridization in plants lead to reticulate
networks, therefore, the methods of constructing trees fail in
constructing reticulate networks. In this paper a model has been
employed to reconstruct phylogenetic network in honey bee. This
network represents reticulate evolution in honey bee. The maximum
parsimony approach has been used to obtain this reticulate network.
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References
- C. Dutta And A. Pan,"Horizontal gene transfer and bacterial diversity" ,J. Biosci. (Suppl. 1) 27 27-33, 2002.
- C.T Nguyen,B. Nguyen, W.K.Sung and L. Zhang,-Reconstructing Recombination Network from Sequence Data :The Small Parsimoney Problem",IEEE CS,Cl and EMB Societies & the ACM,Vol.4,No.3,pg 394-401,2007.
- D.H. Huson and D. Bryant,"Application of Phylogenetic Networks in Evolutionary Studies", Mol. Biol. Evol. 23(2):254-267. 2006.
- G. Jin, L. Nakhleh, S. Snir and T. Tulle,"Efficient parsimony based methods for phylogenetic network Reconstruction",Vol. 23 ECCB, pages e123-e128. 2006.
- J. Hein,"Reconstructing evolution of sequences subject to recombination using parsimon",Maths.Biosci.98, 185-200, 1990.
- J. Hein,"A heuristic method to reconstruct the history of sequences subject to recombination",J.mol.Evol.36,396-405, 1993.
- J. Archer, J. W. Pinney, J. Fan, E. S Loriere," Identifying the Important HIV-1 Recombination Breakpoints", PLoS Comput Biol. 4(9): e1000178, 2008.
- M.T Hallet and J. Lagergren,"Efficient algorithms for lateral gene transfer problems. In: Proceedings of the 5th Ann Int Conf Compt Mol Biol (RECOMB 01), New York, and ASM Press. pp 149-156, 2001.
- L. Nakhleh, D. Ruth-s,"Gene Trees, species Trees, and species Networks", Lecture notes. RECOMB, San Diego, California USA, 1:1- 24, 2003. [10] L. Nakhleh,G.J.,F Zhao,"Reconstructing Phylogenetic Networks Using Maximum Parsimony", RECOMB, USA, 1:200-210, 2004. [11] L. O. Martins,E.Leal,H. Kishino,"Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees",PLoS One,Volume 3,Issue 7,July 2008,e2651. [12] V. Makarenkov, P . Legendre and Y. Desdevises,"Modeling phylogenetic relationships using reticulated networks",Zool Scrip 33:89-96, 2004. [13] V. Makarenkov,"T-Rex: reconstructing and visualizing phylogenetic trees and reticulation networks,",Bioinf 17:664-668, 2001. [14] V. Makarenkov and P. Legendre ,"From a phylogenetic tree to a reticulated network", J Comput Biol 11:195-212, 2004. [15] D. Posada and K.A Crandall,"Evaluation of methods for detecting recombination from DNA sequences: Computer simulations", Proc Natl Acad Sci USA 98(24):13757-13762, 2001. [16] W.K Sung, "Phylogenetic Trees Reconstruction", CS5238: 1-7, 2005.