Published February 12, 2024
| Version v1
Dataset
Open
Training Data for "From reads to (pseudo) counts : guided step by step exploration" tutorial (Galaxy Training Material)
Authors/Creators
Contributors
Project leader (2):
Project member (3):
Description
A sampled subset of reads, used in the 'From Reads to (Pseudo) Counts: Guided Step-by-Step Exploration' GNT tutorial, which covers RNA-seq analysis including:
- Qualitative analysis
- Quantification of genes and transcripts (counts and pseudo-counts)
- Assembly with reference
- Local assembly
This subset is extracted from:
Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, Mathilde Boutigny, David Monnin, Adil El Filali, Claudia Marcia Carareto, Cristina Vieira, Franck Picard, Natacha Kremer, Fabrice Vavre, Marie-France Sagot, Vincent Lacroix, SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence, Nucleic Acids Research, Volume 44, Issue 19, 2 November 2016, Page e148, https://doi.org/10.1093/nar/gkw655
Files
Files
(466.1 MB)
| Name | Size | |
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md5:9c8fff4a0fbf1ef7eafdc031d52e002b
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146.4 MB | Download |
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md5:535bbc999816a0c6df3f673d1746fb08
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94.5 MB | Download |
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md5:099ab28c19fe8a6b4a7e9260612ddecf
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146.3 MB | Download |
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md5:c0cd2aa2e84e3e3977859c34feb63cd5
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2.3 MB | Download |
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md5:703e4c270ab0a578deb4800c33b36367
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8.5 MB | Download |
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md5:8b4e6c6f17f6f35444a60fdc915e052c
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3.9 MB | Download |
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md5:ca4edcdddb98d7868f93e2308e297704
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752.0 kB | Download |
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md5:db6e72022cf650c4b33bd888b92a0391
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19.4 MB | Download |
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md5:f347d2f8f8ffbfa28c785e3a9fe3db79
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12.9 MB | Download |
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md5:878a413765d09c3ec75409fb1d1573f1
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13.3 MB | Download |
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md5:cbb973e63f52981bd591de0404df5839
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14.9 MB | Download |
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md5:cf710bc677b3d0e787b4408bef00d789
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2.9 MB | Download |
Additional details
Dates
- Available
-
2024
References
- Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, Mathilde Boutigny, David Monnin, Adil El Filali, Claudia Marcia Carareto, Cristina Vieira, Franck Picard, Natacha Kremer, Fabrice Vavre, Marie-France Sagot, Vincent Lacroix, SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence, Nucleic Acids Research, Volume 44, Issue 19, 2 November 2016, Page e148, https://doi.org/10.1093/nar/gkw655