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Published December 10, 2019 | Version 0.3
Software Open

Singularity image: "covtobed" -- a tool to extract coverage information from BAM files

Creators

  • 1. University of Turin
  • 2. Quadram Institute Bioscience

Description

Covtobed 0.3

Read one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

https://github.com/telatin/covtobed/

Files

Files (146.5 MB)

Name Size Download all
md5:e0e710707cb036894cc8ab421aa8970c
146.5 MB Download

Additional details

Funding

Determinants of microbe-host responses in the gut across life BBS/E/F/000PR10353
UK Research and Innovation