Published January 14, 2024
| Version v1
Dataset
Open
CG simulations of eVP40-Membrane systems
Description
This list contains the .xtc (compressed trajectory) and .gro (coordinate) files for five different coarse-grained systems:
1) eVP40 & membrane (without PA)
2) eVP40 & membrane (with 2% PA)
3) eVP40 & membrane (with 7% PA)
4) membrane only (without PA)
5) membrane only (with 7% PA)
The trajectories uploaded here are saved at 0.006 microseconds/frame (i.e., 3335 frames = 20.01 microseconds). The trajectories for the protein-membrane systems are compacted and centered.
To load the trajectories on VMD, type the following in Tk console (7% PA trajectory for example):
$ mol new eVP40_7%PA_coords.gro
$ mol addfile eVP40_7%PA_traj.xtc waitfor allFiles
Files
(8.8 GB)
| Name | Size | |
|---|---|---|
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md5:153724e39665f9974cd86ff592ded0d3
|
9.8 MB | Download |
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md5:615db1ddf39486b24eef392ebfa92638
|
1.9 GB | Download |
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md5:bea39e56a10e4587dc8b2cf5bd919ef2
|
10.9 MB | Download |
|
md5:e04928c77ee9a4fdfdf345b4a545fe38
|
2.2 GB | Download |
|
md5:2f5c815b75b01a4cd7c57402ebe0f35c
|
10.9 MB | Download |
|
md5:23aa4c776298c06001a89e5bd2505748
|
2.2 GB | Download |
|
md5:9c2201ab32283b7fd9fe9f6449b5dc16
|
4.9 MB | Download |
|
md5:71c496190d8144d0dcee4f10a0e6b076
|
1.2 GB | Download |
|
md5:fb05f2c206f86a97dbab63147ad45ce0
|
4.9 MB | Download |
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md5:a7efca07d1b310275b7f5b751130fdf0
|
1.2 GB | Download |