Published November 14, 2017 | Version v1

MHC-wide association results (uveitis-JIA cases vs non-uveitis JIA samples): male-specific analysis

Authors/Creators

  • 1. University Medical Center Utrecht

Description

Association results across the major histocompatibility complex (MHC) on chromosome 6 in male samples only. Note that coordinates are on build hg18. Columns are: 

  1. CHR: chromosome
  2. SNP: SNP identifier
  3. BP: basepair position (hg18)
  4. A1: minor allele/tested allele
  5. A2: other allele (major allele)
  6. FRQ: frequency of the A1 allele
  7. INFO: imputation quality info score
  8. OR: odds ratio
  9. SE: standard error of the t-statistic (note that the t-statistic is not provided in the file)
  10. P: p-value of the SNP

 

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