Published June 5, 2024 | Version v4
Dataset Open

Demo Live Cell Imaging Dataset for PetaKit5D

Authors/Creators

  • 1. University of California, Berkeley

Description

Demo dataset for PetaKit5D (https://github.com/abcucberkeley/PetaKit5D). 

The dataset is for the large field of view live cell imaging of LLC-PK1 cells of nuclei and endoplasmic reticulum (ER). It contains two time points with two channels. Each time point and channel contains 4 volumetric tiles. Some demos in PetaKit5D use this dataset to demonstrate the usage.

Please cite our paper (https://doi.org/10.1101/2023.12.31.573734) if you use this dataset in your research:

Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, Frederik Görlitz, Tian-Ming Fu, Daniel E. Milkie, Joshua L. Lillvis, Alexander Kuhn, Chu Yi Aaron Herr, Wilmene Hercule, Marc Nienhaus, Alison N. Killilea, Eric Betzig, Srigokul Upadhyayula. Image processing tools for petabyte-scale light sheet microscopy data. bioRxiv 2023.12.31.573734; doi: https://doi.org/10.1101/2023.12.31.573734

Notes (English)

X.R. and S.U. are partially funded by the Philomathia Foundation. X.R. is partially funded by the Chan Zuckerberg Initiative. X.R. and S.U. are supported by Lawrence Berkeley National Lab’s LDRD. M.M. and E.B. are funded by HHMI. E.B. is an HHMI Investigator. S.U. is funded by the Chan Zuckerberg Initiative Imaging Scientist program. S.U. is a Chan Zuckerberg Biohub – San Francisco Investigator.

Files

Files (7.6 GB)

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md5:7f5cbe8a955dce4106a769f1dc1e07a0
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Additional details

Identifiers

DOI
10.1101/2023.12.31.573734

Related works

Cites
Publication: 10.1101/2023.12.31.573734 (DOI)
Is supplement to
Software: https://github.com/abcucberkeley/PetaKit5D (URL)
Software: https://github.com/abcucberkeley/PetaKit5D-GUI (URL)
Software: https://github.com/abcucberkeley/Parallel_Fiji_Visualizer (URL)
Software: https://github.com/abcucberkeley/PyPetaKit5D (URL)

References

  • Xiongtao Ruan, Matthew Mueller, Gaoxiang Liu, Frederik Görlitz, Tian-Ming Fu, Daniel E. Milkie, Joshua L. Lillvis, Alexander Kuhn, Chu Yi Aaron Herr, Wilmene Hercule, Marc Nienhaus, Alison N. Killilea, Eric Betzig, Srigokul Upadhyayula. Image processing tools for petabyte-scale light sheet microscopy data. bioRxiv 2023.12.31.573734; doi: https://doi.org/10.1101/2023.12.31.573734