Video/Audio Open Access

Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections - Supplementary videos

Lobachev, Oleg; Steiniger, Birte S.

We regard ROIs, regions of interest, from a human spleen specimen in single (four ROIs) and double (three ROIs) staining. The ROIs with the same number correspond to each other. Below we map references in manuscript (bold) to file names in this repository (italics).

  • File colour-deconvolution.png – settings of colour deconvolution in Fiji for double staining.
  • File comments to videos.odt – a commentary to S3[c,d] Video.
  • S1a,b Video to S3a,b Video: files video_[1,2,3][a,b].mov – sequence of section with single (a) and double (b) staining for ROI 1 to 3 in the main text.
  • S1c Video to S3c Video: files video_[1,2,3]c.mov – video of the reconstruction, single staining, special blood vessels highlighted.
  • S1d Video to S4d Video: files video_[1,2,3]d.mov – an overview video of the reconstruction, double staining.
  • S4 Video: file video_4.mov – quality control in virtual reality.
  • S1 Figure: a supplementary figure fig_S1.tiff  and its caption fig_S1_legend.odt
  • S2 Figure: a supplementary figure fig_S2.tiff  and its caption fig_S2_legend.odt

This data corresponds to the publication "Capillary networks and follicular marginal zones in the human spleen. Three-dimensional models based on immunostained serial sections" by B. S. Steiniger, C. Ulrich, M. Berthold, M. Guthe, and O. Lobachev, 2017.

Files (548.0 MB)
Name Size
Colour-Deconvolution.png
md5:29b5bf892188becb98efb8ee9e1412a6
20.4 kB Download
Comments to videos.odt
md5:0e262a0e53e91fdf7da546dbe39ef6a1
17.5 kB Download
fig_S1.tiff
md5:d2893cab0199438350ebb24878861c32
53.8 MB Download
fig_S1_legend.odt
md5:8f68142ec837874545132bf0ea22bb28
2.8 kB Download
fig_S2.tiff
md5:6afa9a69c3c2a06354382a839eba2fc8
28.9 MB Download
fig_S2_legend.odt
md5:0fea4548f5f53fe2cf71a34ad300ccee
8.9 kB Download
video_1a.mov
md5:d91fb473fc1b8dd7f26750aca77d348f
5.4 MB Download
video_1b.mov
md5:3bd16a3386f382b3677e5206953e5132
9.5 MB Download
video_1c.mov
md5:7bfd11e7033c3ad479c0b1d5cb26e46d
63.5 MB Download
video_1d.mov
md5:35636ad8de294dc46b4f0627427e4764
56.1 MB Download
video_2a.mov
md5:f9ebddea17e590c9daa662cc760c96e8
5.8 MB Download
video_2b.mov
md5:d60f85226be4a6308347d1c49a69f9b3
8.7 MB Download
video_2c.mov
md5:3580d9af80673e27e776c98204ea5b2e
61.3 MB Download
video_2d.mov
md5:a1354f391b6d865dd85094daba8e95fa
55.5 MB Download
video_3a.mov
md5:b74ef7743c302fe94f79c9f0d163f6b1
5.8 MB Download
video_3b.mov
md5:8e981706776465483d59c5ea8bf45233
8.1 MB Download
video_3c.mov
md5:0f4080f55e1721459a0d5c767b70bc1a
70.8 MB Download
video_3d.mov
md5:de2cb770cb749673536a5043beb625ac
55.6 MB Download
video_4.mov
md5:7c5cf4629360041bc1477c6383197744
59.3 MB Download
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