Published December 13, 2023 | Version v1
Dataset Open

Effect of shade and nitrogen content on Arabidopsis Col-0 and cytokinin mutants abcg14 and cypDM mRNA-seq gene expression processed tables.

Authors/Creators

  • 1. ROR icon Wageningen University & Research
  • 2. ROR icon Utrecht University

Description

This dataset is an add-on for Gautrat et al., containing processed files for the mRNAseq data in tab delimited txt format.

Here, you can obtain the raw counts file, the normalized CPM values, and the normalized logCPM values

The RNA-seq raw data supporting the conclusions of this article have been deposited in ArrayExpress (Kolesnikov et al., 2015) at EMBL-EBI (www.ebi.ac.uk/arrayexpress), under accession numbers E-MTAB-13638.

All relevant custom r scripts are available at https://github.com/aromanowski/shade_N_ck

Files

Files (32.3 MB)

Name Size Download all
md5:8ea14e650786c1ab9114da021884b531
8.7 MB Download
md5:0502d0163b2da7b82b22df57ece75746
15.7 MB Download
md5:ffdbc6a18708eba15e7e92d28ad07a02
8.0 MB Download

Additional details

Related works

Is published in
Preprint: 10.1101/2023.12.22.572814 (DOI)
Is supplement to
Dataset: https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-13638 (URL)