Published August 26, 2024 | Version v2
Dataset Open

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues - Processed Data, Scripts & Supplementary Material

Authors/Creators

  • 1. Institut National de Recherche pour l'Agriculture l'Alimentation et l'Environnement
  • 2. ROR icon Laboratoire de Biométrie et Biologie Evolutive
  • 3. Institut de Recherche pour le Développement
  • 4. Institut de recherche pour le développement France-Sud
  • 5. CNRS Délégation Rhône-Auvergne
  • 6. ROR icon Institut de Génomique Fonctionnelle de Lyon

Description

This deposit contains the processed data (.bam files) for the preprint https://doi.org/10.1101/2023.05.27.542554
Scripts to produce these files, as well as genome and annotations to explore this data in IGV are available at https://gitlab.inria.fr/erable/te_long_read. A release of this git repository at the date of the publication of the paper in Peer Community Journal is also available in this zenodo deposit.
So are the supplementary tables and figures associated to the paper.
Raw fastq files are available at the BioProject PRJNA956863

Files

SupplementaryFiguresPeerCommunityJournal2024.pdf

Files (7.6 GB)

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Additional details

Related works

Is supplement to
Preprint: 10.1101/2023.05.27.542554 (DOI)

Funding

Agence Nationale de la Recherche
ASTER - Algorithms and software for third generation RNA sequencing ANR-16-CE23-0001
Agence Nationale de la Recherche
LongevitY - Exploring the contribution of sex chromosomes to male/female differences in aging and longevity ANR-20-CE02-0015