Software Open Access
NeuroAnatomy Toolbox v1.5.2
Jefferis, Gregory S.X.E.; Manton, James D.
nat v1.5.2
This is the current stable release on github. Changes since the last stable release on CRAN (v1.4.10) are detailed below.
Changes in version 1.5.2:
- add seglengths function for neurons
- add segmentgraph function to produced a simplified graph representation of neurons with one edge per segment
- add potential_synapses.dotprops method
- add as.seglist.neuron method
- teach plot3d.hxsurf and subset.hxsurf to accept regexes
- always drop unused vertices in as.mesh3d.hxsurf
- fix bug in write.neurons when subdir not specified
- fix colouring of vectors by plot3d.dotprops
- dev: switch to roxygygen2 v4
Changes in version 1.5.1:
- add potential_synapses (from nat.as)
- surfaces: add subset.hxsurf and as.mesh3d
- Teach read.im3d to read Vaa3d raw format
- add plot.neuronlist (for 2d plotting)
- add c.neuronlist function to combine neuronlists
- add db argument to plot3d.character
- make WithNodes=FALSE the default for plot3d.neuronlist
- make asp=1 the default for image.im3d
- write.cmtkreg warns if versions specified by cmtkreg attribute and argument differ (to avoid writing old registrations as if they were new or vice versa)
- fix: prune.neuronlist method signature (and therefore dispatch)
Files
(1.2 MB)
| Name | Size | |
|---|---|---|
|
nat-v1.5.2.zip
md5:71fc623dcc2ec101408223af3350d4ea |
1.2 MB | Download |
1,596
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downloads
| All versions | This version | |
|---|---|---|
| Views | 1,596 | 645 |
| Downloads | 137 | 30 |
| Data volume | 490.0 MB | 36.1 MB |
| Unique views | 1,168 | 546 |
| Unique downloads | 69 | 25 |
Indexed in
- Publication date:
- May 27, 2014
- DOI:
-
- Keyword(s):
- neuroscience, neuroanatomy, image processing, R
- Grants:
-
European Commission:
- OLFPERCEPT - Neural Basis of Olfactory Perception in Drosophila (211089)
- Related identifiers:
- Previous versions
- License (for files):
- GNU General Public License v3.0 only