Published June 18, 2024 | Version v1.2

Domain phylogenetics for the PKZILLAs

Authors/Creators

  • 1. ROR icon University of California San Diego

Description

Source data files, executable code, and results for A-type PKZILLA PKS domain phylogenetic analysis.

Difference from previous version:

Difference between v1.0 to v1.1 of this Zenodo item series: is that KR11f0, KR20f0 were renamed in the plots to K11*, KR20*, respectively, based on new interpretations.  

Difference between v1.1 to v1.2: Trees were recalculated to include bootstrap node support values (Felsenstein bootstrap proportions)

Domain phylogenetics method:

See manuscript for full details. 

Plots were generated from the resulting newick files using ete3. 

Files

Domain_phylogeny_for_PKS_domains.zip

Files (3.9 MB)

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Additional details

Related works

Continues
Dataset: 10.5281/zenodo.10028517 (DOI)

Funding

National Institutes of Health
ELUCIDATING THE BIOSYNTHESIS OF A MODEL LADDER-FRAME POLYETHER TOXIN F32ES032276