Data supplementing the article "Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles" F. Keck, V. Vasselon, F. Rimet, A. Bouchez, and M. Kahlert submitted to Molecular Ecology Resources journal
Authors/Creators
- 1. (1) SLU, (2) INRA
- 2. (2) INRA
- 3. (1) SLU
Description
These data supplement the article "Enhancing DNA metabarcoding for biomonitoring with phylogenetic estimation of OTUs' ecological profiles" F. Keck, V. Vasselon, F. Rimet, A. Bouchez, and M. Kahlert submitted to Molecular Ecology Resources journal
The directory contains the following files:
278 (139 x 2 replicates) samples fastq files.rar - contains the 278 fastq files provided by the sequencing platform with demultiplexed and contig DNA reads corresponding to the 139 samples with 2 sequencing replicates (A and B).
Counts_diatoms.xlsx - contains the morphological inventories with species list (Omnidia code) and valve abundances for the 139 samples.
Sites_list.xlsx - contains information regarding the 139 samples, including: River name, GPS coordinates, code used for molecular analysis and corresponding to sequencing fastq names.