Published October 27, 2023 | Version v1
Dataset Open

Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing - Image and In SItu Sequencing data

Authors/Creators

  • 1. ROR icon Uppsala University
  • 2. ROR icon Stockholm University

Description

Image and ISS data for Spatial transcriptome mapping of the desmoplastic growth pattern of colorectal liver metastases by in situ sequencing reveals a biologically relevant zonation of the desmoplastic rim.

Image data consists of:

  • Nucler stain (DAPI)
  • Masks for liver, rim and tumor regions
  • H&E images of parallel tissue sections

Gene and cluster marker data is collected in the markers.h5ad file which can be read using AnnData (https://anndata.readthedocs.io/en/latest/). 

 

Files

CRCLM_DATA.zip

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