Published October 6, 2017 | Version v2
Dataset Open

Bratwurst dataset

Authors/Creators

  • 1. Department of Bioinformatics and Functional Genomics, Institute for Pharmacy and Molecular Biotechnology (IPMB) and Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ)
  • 2. Genome Biology Unit, European Molecular Biology Laboratory (EMBL)
  • 3. The Francis Crick Institute and Imperial College London
  • 4. Berlin Institute of Health (BIH)
  • 5. Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ)
  • 6. Bioinformatics and Omics Data Analytics, German Cancer Research Center (DKFZ) and Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ)

Description

Intermediate results for the publication "Deciphering programs of transcriptional regulation by combined deconvolution of multiple omics layers" (https://doi.org/10.1101/199547) using the R package Bratwurst (https://github.com/wurst-theke/bratwurst). The analysis is based on publicly available data presented by Corces et al. in "Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution" (Nature Genetics 2016, https://www.ncbi.nlm.nih.gov/pubmed/27526324).

Files

Files (34.3 GB)

Name Size Download all
md5:0c44405a4f59f1e3a4d6645db3c88084
10.8 GB Download
md5:cc58bff89b8cc87d1bced3260bd1e342
18.9 GB Download
md5:30032d8f5ca438ba8537b9cf4f331069
2.8 GB Download
md5:8aef3035f2ca7918362cd6690efbf521
1.7 GB Download

Additional details

Related works

Cites
ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74246/suppl/GSE74246_RNAseq_All_Counts.txt.gz (URL)
ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74912/suppl/GSE74912_ATACseq_All_Counts.txt.gz (URL)
https://www.ncbi.nlm.nih.gov/pubmed/27526324 (URL)
Is supplement to
https://github.com/wurst-theke/bratwurst (URL)
https://www.biorxiv.org/content/early/2017/10/08/199547 (URL)