Published October 19, 2023 | Version v1

Pairwise residue-residue Euclidean distances for a Histatin-5 ensemble

  • 1. ROR icon Centre de Biologie Structurale
  • 2. Centre de Biochimie Structurale

Description

Pairwise residue-residue Euclidean distances for a pair of independent replicas of the protein ensemble Histatin-5.

Each file corresponds to a n x p matrix, where n is the number of conformers and p is the number of pairwise inter-residue distances, that is, p = L(L-1)/2 where L is the number of sequence residues. Each row corresponds to a p-vector of distances featuring the corresponding conformation. Distances are computed between CB atoms (CA for glycines) and are given in Angstroms (Å).

Conformations were generated using Flexible-Meccano (Ozenne et al. 2012, Bernado et al. 2005) and refined using previously reported small-angle X-ray scattering (SAXS) data (Sagar et al. 2021).

Files

histatin_net_1_dist_r3_matrix.txt

Files (10.2 MB)

Name Size
md5:7971685142911d2cd437bfca4a41526c
5.1 MB Preview Download
md5:d1b172db3c93a671edb290a683f4ef28
5.1 MB Preview Download

Additional details

Related works

References
Journal article: 10.1093/bioinformatics/bts172 (DOI)
Journal article: 10.1073/pnas.0506202102 (DOI)
Journal article: 10.1021/acs.jctc.1c00014 (DOI)
Preprint: arXiv:2310.11822 (arXiv)