Published October 19, 2023
| Version v1
Dataset
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Pairwise residue-residue Euclidean distances for a Histatin-5 ensemble
Authors/Creators
Description
Pairwise residue-residue Euclidean distances for a pair of independent replicas of the protein ensemble Histatin-5.
Each file corresponds to a n x p matrix, where n is the number of conformers and p is the number of pairwise inter-residue distances, that is, p = L(L-1)/2 where L is the number of sequence residues. Each row corresponds to a p-vector of distances featuring the corresponding conformation. Distances are computed between CB atoms (CA for glycines) and are given in Angstroms (Å).
Conformations were generated using Flexible-Meccano (Ozenne et al. 2012, Bernado et al. 2005) and refined using previously reported small-angle X-ray scattering (SAXS) data (Sagar et al. 2021).
Files
histatin_net_1_dist_r3_matrix.txt
Additional details
Related works
- References
- Journal article: 10.1093/bioinformatics/bts172 (DOI)
- Journal article: 10.1073/pnas.0506202102 (DOI)
- Journal article: 10.1021/acs.jctc.1c00014 (DOI)
- Preprint: arXiv:2310.11822 (arXiv)