Published October 17, 2023
| Version v1
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Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types
Description
These files contain the raw sequencing data (demultiplexed, unaligned BAM files or FASTQ files) collected as part of following manuscript: "Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types.". Included are oxidized and unoxidized small RNA sequencing libraries collected from RKO cells (human cell line, timecourse for methyltransferase expression), M. musculus B cells (splenic, CD43 depleted; methyltransferase under Cd79a-Cre driver), M. Musculus Plasma cells (sorted, methyltransferase under Bhlha15-Cre driver).
Table of contents (English)
B cell experiment (Cd79aCre) samples:
- unox_HenT6B/HenT6B
- ox_HenT6B/HenT6B
- unox_HenT6B/HenT6B Cd79a-Cre
- ox_HenT6B/HenT6B Cd79a-Cre
- unox_HenT6B/+ Cd79a-Cre
- ox_HenT6B/+ Cd79a-Cre
Plasma cell titration experiment (Bhlha15Cre) samples:
- unox_100
- ox_100
- unox_1
- ox_1
- unox_01
- ox_01
- unox_001
- ox_001
RKO timecourse (RKO) samples:
- unox_0h
- ox_0h
- unox_12h
- ox_12h
- unox_48h
- ox_48h
- unox1_wt
- ox1_wt
- unox2_wt
- ox2_wt