fs-food-security-animal-prod-agri-systems

Code and data to reproduce the income-group analyses for Manuscript (Animal Production and Agri-food Systems).

What this repo contains

• data/

  • step_1_income_food_production.xlsx — Step 1 (stratified bivariate models by income group)
  • step_2_income_food_production.xlsx — Step 2 (hierarchical/mixed-effects panel models)
  • step_3_income_food_production.xlsx — Step 3 (mixed-effects moderator screening)

• src/

  • Main Analysis.R — main analysis pipeline (requires the master input dataset; update the input path at the top of the script).
  • Plots.R — figure generation from the data/step_* files (update the read_excel() paths at the top to point to data/).

Quick start (R)

1. Open R in the repository root.
2. Install packages (if needed): readxl, dplyr, tidyr, ggplot2, scales, gridExtra, grid, plus modeling packages used in the pipeline (MASS, sandwich, lmtest, lme4, glmmTMB).
3. Reproduce figures:
   • Edit the three read_excel() lines at the top of src/Plots.R to use data/step_*.xlsx.
   • Run: source("src/Plots.R")

Data Availability

This project uses openly available data from public databases. The bibliometric dataset used is available upon reasonable request.

License

This repository is licensed under the MIT License, allowing free use, modification, and distribution with attribution. See LICENSE file for more details.