Published June 26, 2025 | Version v1
Dataset Open

Festuca glaucescens Fg1 repeat library

Authors/Creators

  • 1. ROR icon Institute of Plant Genetics, Polish Academy of Sciences
  • 2. ROR icon Adam Mickiewicz University in Poznań

Description

Repeat library for Festuca glaucescens, BioProject PRJNA1055418 . Repeat prediction was performed using RepeatModeler v2.0.5 with the Dfam 3.8 database. The pipeline incorporated TRF v4.09, RECON, and RepeatScout v1.0.6. Long terminal repeat (LTR) elements were identified using the LTRStruct module, which integrates GenomeTools v1.6.5, LTR_Retriever, NINJA v1.0 (clustering only), MAFFT v7.525, and CD-HIT v4.8.1, with the ltrSeqLimit parameter set to 11,000.

 

 

Files

Files (15.3 MB)

Name Size
md5:4f9d84e0edcb497a523fa8c5d404f19c
15.3 MB Download

Additional details

Related works

Is supplement to
Dataset: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1055418 (URL)