Published July 19, 2023
| Version v1
Journal article
Open
Borg extrachromosomal elements of methane-oxidizing archaea have conserved and expressed genetic repertoires
Creators
- 1. Innovative Genomics Institute, University of California, Berkeley, CA, USA
- 2. Oxford Nanopore Technologies Inc, New York, NY, USA
- 3. Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, USA
- 4. Institut Pasteur, Université de Paris cité, Unit Evolutionary Biology of the Microbial Cell, Paris, France
- 5. Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology (QUT), Translational Research Institute, Woolloongabba, Australia
- 6. Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA & Department of Microbiology, University of Tennessee, Knoxville, TN, USA
- 7. Innovative Genomics Institute, University of California, Berkeley, CA, USA & Department of Environmental Science, Policy and Management, University of California, Berkeley, CA, USA & Biomedicine Discovery Institute, Monash University, Vic, Australia & Department of Earth and Planetary Science, University of California, Berkeley, CA, USA Berkeley, CA, USA
Description
This repository contains files that accompany the Schoelmerich et al. (2023) bioRxiv preprint.
These files include:
- 47 proteins with 8 CxxCH motifs from 17 Borgs and two Methanoperedens genomes bMp and cMp (47_8heme_MHCs.fasta)
- IQ-TREE of concatenated Borg marker proteins from 28 Borgs (CONCAT_28Borgs_40Markers.faa.treefile) and the underlying protein sequences (CONCAT_28Borgs_40Markers.faa)
- AlphaFold2 predicted structural models of Borg proteins
Files
AF2_models_Orange_Borg.zip
Files
(1.4 MB)
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