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Published December 31, 2014 | Version v1
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Good Reasons and Guidance for Mapping Planktonic Protist Distributions

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Bulit, Celia (2014): Good Reasons and Guidance for Mapping Planktonic Protist Distributions. Acta Protozoologica 53 (1): 13-27, DOI: 10.4467/16890027AP.14.003.1440, URL: https://www.mendeley.com/catalogue/81b54901-f47a-3576-b09a-a547fbc1254a/

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urn:lsid:plazi.org:pub:5877FFD2FFCDFF9B61182C34FF822877

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Publication: 10.1093/icesjms/fst034 (DOI)
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Dataset: http://table.plazi.org/id/78986634FFCFFF9961442D48FF3229D8 (URL)
Figure: 10.5281/zenodo.8377569 (DOI)
Figure: 10.5281/zenodo.8377571 (DOI)
Figure: 10.5281/zenodo.8377573 (DOI)
Figure: 10.5281/zenodo.8377575 (DOI)
Figure: 10.5281/zenodo.8377577 (DOI)
Figure: 10.5281/zenodo.8377579 (DOI)

References

  • Acosta-Mercado D., Lynn D. H. (2002) A preliminary assessment of spatial patterns of soil ciliate diversity in two subtropical forests in Puerto Rico and its implications for designing an appropriate sampling approach. Soil. Biol. Biochem. 34: 1517-1520
  • Armstrong M. (1998) Basic linear geostatistics, Springer-Verlag, Berlin
  • Atkinson P. M. and Tate N. J. (2000) Spatial scale problems and geostatistical solutions: A review. Prof. Geogr. 52(4): 607-623
  • Bellehumeur C., Legendre P., Marcotte D. (1997) Variance and spatial scales in a tropical rain forest: Changing the size of sampling units. Plant Ecol. 130: 89-98
  • Benoit-Bird K. J., McManus M. A. (2012) Bottom-up regulation of a pelagic community through spatial aggregations. Biol. Lett. 8: 813-816
  • Benoit-Bird K. J., Battaile B. C., Heppell S. A., Hoover B., Irons D., Jones N., Kuletz K. J., Nordstrom C. A., Paredes R., Suryan R. M., Waluk C. M. , Trites A. W. (2013) Prey patch patterns predict habitat use by top marine predators with diverse foraging strategies. Plos One 8 (1): 1-12
  • Berryman A., Turchin P. (2001) Identifying the density-dependent structure underlying ecological time series. Oikos 92: 265-270
  • Bulit C., Diaz-Avalos C., Signoret M., Montagnes D. J. S. (2003) Spatial structure of planktonic ciliate patches in a tropical coastal lagoon: An application of geostatistical methods. Aquat. Microb. Ecol. 30: 185-196
  • Bulit C., Diaz-Avalos C., Montagnes D. J. S. (2004) Assessing spatial and temporal patchiness of the autotrophic ciliate Myrionecta rubra: A case study in a coastal lagoon. Mar. Ecol. Prog. Ser. 268: 55-67
  • Bulit C., Diaz-Avalos C. (2009) Patrones de diversidad de ciliados del plancton en la laguna de Chautengo, Guerrero, Mexico. Hidrobiologica 19: 109-118
  • Bulit C., Diaz-Avalos C., Montagnes D. J. S. (2009) Scaling patterns of plankton diversity: A study of ciliates in a tropical coastal lagoon. Hydrobiologia 624: 29-44
  • Bulit C., Diaz-Avalos C., Montagnes D. J. S. (2011) Spatial structure of abundance and diversity of microplanktic ciliates in a coastal lagoon. Interciencia 36: 593-599
  • Bulit C., Macek M., Montagnes D. J. S. (2013) Insights on short term blooms of planktonic ciliates, provided by an easily recognised genus: Cyrtostrombidium. Acta Protozool. 52: 1-12
  • Chave J. (2013) The problem of pattern and scale in ecology: What have we learned in 20 years? Ecol. Lett. 16: 4-16
  • Chiles J.-P., Delfiner P. (1999) Geostatistics: Modeling spatial un- certainty. Wiley, New York
  • Cressie N. (1993) Statistics for spatial data. Wiley, New York
  • Cressie N., Wikle C. K. (2011) Statistics for spatio-temporal data. John Wiley and Sons
  • Dalthorp D., Nyrop J., Villani M. G. (2000) Foundations of spatial ecology: The reification of patches through quantitative descrip- tion of patterns and pattern repetition. Entomol. Exp. Appl. 96: 119-127
  • Diggle P. (1990) Time series: A biostatistical introduction. Clarendon, Oxford
  • Diggle P., Tawn J. A., Moyeed R. (1998) Model-based geostatistics. Appl. Statist. 47: 299-350
  • Dolan J. R., Stoeck T. (2011) Repeated sampling reveals differential variability in measures of species richness and community composition in planktonic protists. Environ. Microbiol. Reports 3: 661-666
  • Ettema C., Wardle D. (2002) Spatial soil ecology. Trends Ecol. Evol. 17: 177-183
  • Fenchel T. (1987) Ecology of Protozoa: The biology of free-living phagotrophic protists. Science Tech Publishers, Madison
  • Ferraro L., Sprovieri M., Alberico I., Lirer F., Prevedello L., Mar- sella E. (2006) Benthic foraminifera and heavy metals distribution: A case study from the Naples Harbour (Tyrrhenian Sea, Southern Italy). Environ. Pollut. 142: 274-287
  • Folt C., Schulze P. C., Baumgartner K. (1993) Characterizing a zoo- plankton neighbourhood: Small-scale patterns of association and abundance. Freshwater. Biol. 30: 289-300
  • Fortin M.-J. (1999) Effects of sampling unit resolution on the esti- mation of spatial autocorrelation. Ecoscience 6: 636-641
  • Fortin M-J., Dale M. (2005) Spatial analysis. A guide for ecologists. Cambridge University Press
  • Franklin R. B., Mills A. L. (2007) Statistical analysis of spatial structure in microbial communities. In: The spatial distribu- tion of microbes in the environment (Eds. R. B. Franklin, A. L. Mills), Springer, Dordrecht, 31-60
  • Goovaerts P. (1997) Geostatistics for natural resources evaluation. Oxford University Press, New York
  • Goovaerts P. (1999) Geostatistics in soil science: State-of-the-art and perspectives. Geoderma 89: 1-45
  • Goovaerts P. (2009) Geostatistical Software. In: Handbook of Ap- plied Spatial Analysis (Eds. M. M. Fischer, A. Getis). Springer, 129-138
  • Honarkhah M., Caers J. (2010) Stochastic simulation of patterns using distance-based pattern modeling. Math. Geosci. 42: 487- 517
  • Hutchinson G. E. (1961) The paradox of the plankton. Am. Nat. 95:137-145
  • Irigoien X., Huisman J., Harris R. P. (2004) Global biodiversity pat- terns of marine phytoplankton and zooplankton. Nature 429: 863-867
  • Isaaks E. H., Srivastava R. M. (1989) An introduction to applied geostatistics. Oxford University Press, New York
  • Kaltenberg A. M., Benoit-Bird K. J. (2013) Intra-patch clustering in mysid swarms revealed through multifrequency acoustics. ICES J. Mar. Sci. doi: 10.1093/icesjms/fst034
  • Kareiva P. (1990) Population-dynamics in spatially complex environments - theory and data. Philos. T. Roy. Soc. B 330: 175-190
  • Keenan S. F., Benfield M. C., Blackburn J. K. (2007) Importance of the artificial light field around offshore petroleum platforms for the associated fish community. Mar. Ecol. Prog. Ser. 331: 219-231
  • Kienel U., Kumke T. (2002) Combining ordination techniques and geostatistics to determine the patterns of diatom distributions at Lake Lama, Central Siberia. J. Paleolimnol. 28: 181-194
  • Kyriakidis P. C., Journel A. (1999) Geostatistical Space - Time Models: A Review. Math. Geol. 31: 651-684
  • Legendre P. (1993) Spatial autocorrelation: Trouble or new paradigm? Ecology 74: 1659-1673
  • Legendre P., Legendre L. (1998) Numerical ecology. Elsevier, Amsterdam
  • Leibold M. A., Norberg J. (2004) Biodiversity in metacommunities: Plankton as complex adaptative systems? Limnol. Oceanogr. 49: 1278-1289
  • Leibold M. A., Holyoak M., Mouquet N., Amarasekare P., Chase J. M., Hoopes M. F., Holt R. D., Shurin J. B., Law R., Tilman D., Loreau M., Gonzalez A. (2004) The metacommunity concept: A framework for multi-scale community ecology. Ecol. Lett. 7: 601-613
  • Leps J., Smilauer P. (2003) Multivariate analysis of ecological data. University of South Bohemia, Ceske Budejovice
  • Levin S. A. (1992) The problem of pattern and scale in ecology. Ecology 73: 1943-1967
  • Levin S. A. (1994) Patchiness in marine and terrestrial systems: From individuals to populations. Philos. T. Roy. Soc. B 343: 99-103
  • Levin S. A., Paine R. T. (1974) Disturbance, patch formation and community structure. PNAS 71: 2744-2747
  • Loreau M., Mouquet N., Gonzalez A. (2003) Biodiversity as spatial insurance in heterogeneous landscapes. P. Natl. Acad. Sci. USA 100: 12765-12770
  • Mackas D., Denman K., Abbott M. (1985) Plankton patchiness: Biology in the physical vernacular. Bull. Mar. Sci. 37: 652-674
  • Majaneva S., Berge J., Renaud P. E., Vader A., Stubner E., Rao A. M., Sparre O., Lehtiniemi M. (2013) Aggregations of predators and prey affect predation impact of the arctic ctenophore Mertensia ovum. Mar. Ecol. Prog. Ser. 476: 87-100
  • Margalef R. (1978) Life-forms of phytoplankton as survival alternatives in an unstable environment. Oceanol. Acta 1: 493-509
  • Marquet P. A., Fortin M-J., Pineda J., Wallin D. O., Clark J., Wu Y., Bollens S., Jacobi C. M., Holt R. D. (1993) Ecological and evolutionary consequences of patchiness: A marine-terrestrial perspective. In: Patch Dynamics, (Eds. S. Levin, T. Powell, J. Steele). Springer, 277-304
  • Massol F., Gravel D., Mouquet N., Cadotte M. W., Fukami T., Lei- bold M. A. (2011) Linking community and ecosystem dynamics through spatial ecology. Ecol. Letters 14: 313-323
  • Mehner T., Holker F., Kasprzak P. (2005) Spatial and temporal het- erogeneity of trophic variables in a deep lake as reflected by repeated singular samplings. Oikos 108: 401-409
  • Menden-Deuer S., Fredrickson K. (2010) Structure-dependent, protistan grazing and its implication for the formation, maintenance and decline of plankton patches. Mar. Ecol. Prog. Ser. 420: 57-71
  • Mitchell E. A. D., Charman D. J., Warner B. G. (2008) Testate amoebae analysis in ecological and paleoecological studies of wetlands: Past, present and future. Biodivers. Conserv. 17: 2115-2137
  • Montagnes D. J. S. (1996) Growth responses of planktonic ciliates in the genera Strobilidium and Strombidium. Mar. Ecol. Prog. Ser. 130: 241-254
  • Montagnes D. J. S., Poulton A. J., Shammon T. M. (1999) Mesoscale, finescale and microscale distribution of micro- and na- noplankton in the Irish sea, with emphasis on ciliates and their prey. Mar. Biol. 134: 167-179
  • Montagnes D. J. S., Allen J., Brown L., Bulit C., Davidson R., Diaz-Avalos C., Fielding S., Heath M., Holliday N. P., Rasmussen J., Sanders R., Waniek J. J., Wilson D. (2008) Factors controlling the abundance and size distribution of the phototrophic ciliate Myrionecta rubra in open waters of the North Atlantic. J. Eukaryot. Microbiol. 55: 457-465
  • Montagnes D. J. S., Allen J., Brown L., Bulit C., Davidson R., Fielding S., Heath M., Holliday N. P., Rasmussen J., Sanders R., Waniek J. J., Wilson D. (2010a) Role of ciliates and other microzooplankton in the Irminger Sea (NW Atlantic Ocean). Mar. Ecol. Prog. Ser. 411: 101-115
  • Montagnes D. J. S., Dower J. F., Figueiredo G. M. (2010b) The pro- tozooplankton-ichthyoplankton trophic link: An overlooked aspect of aquatic food webs. J. Eukaryot. Microbiol. 57: 223-228
  • Pierce R. W., Turner J. T. (1992) Ecology of planktonic ciliates in marine food webs. Rev. Aquat. Sci. 6: 139-181
  • Pinel-Alloul B., Ghadouani A. (2007) Spatial heterogeneity of planktonic microorganisms in aquatic systems. In: The spatial distribution of microbes in the environment, (Eds. R. B. Frank- lin, A. L. Mills). Springer, 203-310
  • Pinel-Alloul B., Niyonsenga T., Legendre P. (1995) Spatial and environmental components of fresh-water zooplankton structure. Ecoscience 2: 1-19
  • Robertson G. P., Freckman D. W. (1995) The spatial-distribution of nematode trophic groups across a cultivated ecosystem. Ecology 76: 1425-1432
  • Rossi R. E., Mulla D. J., Journel A. G., Franz E. H. (1992) Geo- statistical tools for modeling and interpreting ecological spatial dependence. Ecol. Monogr. 62: 277-314
  • Sedda L., Guerrini L., Bouyer J., Kone N., Rogers D. J. (2010) Spatio-temporal modelling of Glossina palpalis gambiensis and Glossina tachinoides apparent densities in fragmented ecosystems of Burkina Faso. Ecography 33: 772-783
  • Seuront L., Strutton P. G. (Eds.) (2004) Handbook of scaling meth- ods in aquatic ecology: measurement, analysis, simulation. CRC Press, Boca Raton
  • Seymour J. R., Marcos, Stocker R. (2009) Resource patch formation and exploitation throughout the marine microbial food web. Am. Nat. 173: E15-E29
  • Sherr E., Sherr B. (2008) Understanding roles of microbes in marine pelagic food webs: A brief history. In: Microbial Ecology of the Oceans, (Ed. D. L. Kirchman). John Wiley and Sons, 27-44
  • Wackernagel H. (1998) Multivariate Geostatistics. Springer
  • Webster R., Oliver M. (2007) Geostatistics for Environmental Scientists. John Wiley and Sons, Chichester
  • Weisse T. (2006) Biodiversity of freshwater microorganisms - Achievements, problems, and perspectives. Pol. J. Ecol. 54: 633-652
  • Yfantis E., Flatman G. T., Behar J. V. (1987) Efficiency of krig- ing estimation for square, triangular and hexagonal grids. Math. Geol. 19: 183-205