Published April 4, 2023
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Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China
Creators
- 1. College of Life Sciences, Sichuan Normal University, Chengdu 610066, China.
- 2. College of Life Sciences, China West Normal University, Nanchong 637002, China.
- 3. Department of Zoology, Women University of Azad Jammu and Kashmir, Bagh, Pakistan
- 4. Central South Inventory and Planning Institute of National Forestry and Grassland Administration, Changsha, Hunan 410014, China
- 5. Sichuan Academy of Forestry, Chengdu 610081, China
Description
Jiang, Haijun, Fu, Changkun, Tang, Keyi, Li, Fengjun, Faiz, Abu Ul Hassan, Guo, Keji, Liu, Shaoying, Chen, Shunde (2023): Molecular phylogenetics and diversity of the Himalayan shrew (Soriculus nigrescens Gray, 1842) (Eulipotyphla, Soricidae) in Southwest China. Zootaxa 5263 (1): 61-78, DOI: 10.11646/zootaxa.5263.1.3, URL: http://dx.doi.org/10.1094/PDIS-04-22-0755-PDN
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- LSID
- urn:lsid:zoobank.org:pub:4A2A6430-AD85-4536-BD1C-76713932FEF5
- LSID
- urn:lsid:plazi.org:pub:FF887044BD2AA872FFD56E1BB024FFC8
References
- Burgin, C.J. & He, K. (2018) Family Soricidae (shrew) In: Wilson, D.E. & Russell, A.M. (Eds.), Hand book of the mammals of the world: insectivores, sloths and colugos. Barcelona: Lynx Edicions, pp. 474-530.
- Chen, S., Liu, S., Liu, Y., Kai, H., Chen, W. & Zhang, X. (2012) Molecular phylogeny of Asiatic short- tailed shrews, genus Blarinella Thomas, 1911 (Mammalia: Soricomorpha: Soricidae) and its taxonomic implications. Zootaxa, 3250 (1), 43-53. https://doi.org/10.11646/zootaxa.3250.1.3
- Chen, S., Sun, Z., He, K., Jiang, X., Liu, Y., Koju, N.P., Zhang, X., Tu, F., Fan, Z., Liu, S. & Yue, B. (2015) Molecular phylogenetics and phylogeographic structure of Sorex bedfordiae based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics Evolution, 84, 245-253.
- Chen, S., Jiao, Q., Liu, Z., Liu, Y. & Liu, S. (2020) Multilocus phylogeny and cryptic diversity of white-toothed shrews (Mammalia, Eulipotyphla, Crocidura) in China. BMC Evolutionary Biology, 20, 29. https://doi.org/10.1186/s12862-020-1588-8
- Corbett, G.B. & Hill, J.E. (1992) The mammals of the Indomalay region: A systematic review. Natural History Museum Publications, Oxford University Press, vii 488 pages. ISBN 0-19-854693-9. Price: £60.00 (hardback) Journal of Tropical Ecology, 9 (3), 338. https://doi.org/10.1017/S0266467400007380
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) JModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772-772. https://doi.org/ 10.1038/nmeth.2109
- Ding, W.N., Ree, R.H., Spicer, R.A. & Xing, Y.W. (2020) Ancient orogenic and monsoon-driven assembly of the world's richest temperate alpine flora. Science, 369 (6503), 578-581.
- Drummond, A.J. & Rambaut, A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7 (1), 214. https://doi.org/ 10.1186/1471-2148-7-214
- Drummond, A.J., Suchard, M.A., Dong, X. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution. 29 (8), 1969-1973.
- Ellerman, J.R. & Morrison-Scott, T.C.S. (1951) Checklist of Palaearctic and Indian Mammals1758-1946. London: British Museum (Natural History).
- Evanno, G.S., Regnaut, S.J. & Goudet, J. (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, 14 (8), 2611-2620. https://doi.org/ 10.1111/j.1365-294X.2005. 02553. x
- Feijo, A., Ge, D.Y., Wen, Z.X., Cheng, J.L., Xia, L., Patterson, B.D. & Yang, Q.S. (2022) Mammalian diversification bursts and biotic turnovers are synchronous with Cenozoic geoclimatic events in Asia. Proceedings of the National Academy of Sciences, 119, 49.
- He, K., Li, Y.J., Brandley, M.C., Lin, L.K. & Jiang, X.L. (2010) A multi-locus phylogeny of Nectogalini shrews and influences of the paleoclimate on speciation and evolution. Molecular Phylogenetics & Evolution, 56 (2), 734-746.
- He, K., Chen, X., Chen, P., He, S.W., Cheng, F., Jiang, X.L. & Campbell, K. (2018) A new genus of Asiatic short-tailed shrew (Soricidae, Eulipotyphla) based on molecular and morphological comparisons. Zoological Research. 39 (5), 321-334. https://doi.org/ 10.24272/j.issn.2095-8137.2018.058
- Heled, Joseph. & Alexei, J.Drummond. (2008) Bayesian inference of population size history from multiple loci. BMC Evolutionary Biology, 8, 289-289. https://doi.org/ 10.1186/1471-2148-8-289
- Hinton, M.A.C. (1922) Scientific results from the mammal survey. No. 34. The house rats of Nepal. Journal of the Bombay Natural History Society, 28, 1056-1066.
- Hoffmann, R.S. (1986) A review of the genus Soriculus (Mammalia: Insectivora). Journal of the Bombay Natural History Society, 82, 459-481.
- Hoffmann, R.S. (1987) A review of the systematics and distribution of Chinese red-toothed shrews (mammalia: soricinae). Acta Theriologica Sinica, 7 (2), 100-139.
- Huelsenbeck, J. & Rannala, B. (2004) Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models. Systematic Biology, 53 (6), 904-13.
- Hutterer, R. (1993) Order Insectivora. Mammal Species of the World, 1993, 69-130.
- Hutterer, R. (2005) Order Soricomorpha. In: Wilson, D.E. & Reeder, D.M. (Eds.), Mammal Species of the World 3rd ed. The Johns Hopkins University Press, Baltimore, pp. 220-311.
- Librado, P. & Rozas, J. (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
- Motokawa, M. (2003) Soriculus minor Dobson, 1890, senior synonym of S. radulus Thomas, 1922 (Insectivora, Soricidae). Mammalian Biology, 68 (3), 178-180. https://doi.org/ 10.1078/1616-5047-00080
- Motokawa, M., Harada, M., Mekada, K. & Shrestha, K.C. (2008) Karyotypes of three shrew species (Soriculus nigrescens, Episoriculus caudatus and Episoriculus sacratus) from Nepal. Integrative Zoology, 3 (3), 180-185. https://doi.org/10.1111/j.1749-4877.2008.00097.x
- Ohdachi, S.D., Hasegawa, M., Iwasa, M.A., Vogel, P., Oshida, T. & Lin, L.K. (2006) Molecular phylogenetics of soricid shrews (Mammalia) based on mitochondrial cytochrome b gene sequences: with special reference to the Soricinae. Proceedings of the Zoological Society of London, 270 (1), 177-191. https://doi.org/ 10.1111/j.1469-7998.2006.00125.x
- Pritchard, J.K., Stephens, M. & Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics. Jun,155 (2), 945-959.
- Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England), Aug, 19 (12), 1572-1574.
- Sambrook, J. & Russell, D.W. (2006) Molecular Cloning, 4th ed. Cold Spring Harbor Laboratory Press, New York. https://doi.org/10.1101/pdb.prot3919
- Smith, A.T. & Xie, Yan. (2009) A Guide to the Mammals of China. Princeton University Press. Princeton, New Jersey.
- Spicer, R.A. (2017,) Tibet, the Himalaya, Asian monsoons and biodiversity- In what ways are they related. Plant Diversity, 2017, 39 (5):12, 233-244. https://doi.org/10.1016/j.pld.2017.09.001
- Springer, M.S., Murphy, W.J. & Roca, A.L. (2018). Appropriate fossil calibrations and tree constraints uphold the Mesozoic divergence of solenodons from other extant mammals. Molecular Phylogenetics & Evolution, S1055790317300994. https://doi.org/10.1016/j.ympev.2018.01.007
- Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28, 2731-2739.