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Biodiversity and phylogeny of Cocculinidae (Gastropoda: Cocculinida) in the Indo-West Pacific

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Lee, Hsin, Puillandre, Nicolas, Kano, Yasunori, Chen, Wei-Jen, Samadi, Sarah (2022): Biodiversity and phylogeny of Cocculinidae (Gastropoda: Cocculinida) in the Indo-West Pacific. Zoological Journal of the Linnean Society 196 (1): 366-392, DOI: 10.1093/zoolinnean/zlac023, URL: https://academic.oup.com/zoolinnean/article/196/1/366/6582189

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References

  • Amon DJ, Copley JT, Dahlgren TG, Horton T, Kemp KM, Rogers AD, Glover AG. 2017. Observations of fauna attending wood and bone deployments from two seamounts on the southwest Indian Ridge. Deep Sea Research Part II: Topical Studies in Oceanography 136: 122-132.
  • Ardila NE, Harasewych MG. 2005. Cocculinid and pseudococculinid limpets (Gastropoda: Cocculiniformia) from off the Caribbean coast of Colombia. Proceedings of the Biological Society of Washington 118: 344-366.
  • Arellano SM, Van Gaest AL, Johnson SB, Vrijenhoek RC, Young CM. 2014. Larvae from deep-sea methane seeps disperse in surface waters. Proceedings of the Royal Society B: Biological Sciences 281: 20133276.
  • Bouchet P, HerosV, Lozouet P, Maestrati P. 2008. A quartercentury of deep-sea malacological exploration in the south and west Pacific: where we do we stand? How far to go? In: Heros V, Cowie RH, Bouchet P, eds. Tropical deep-sea benthos 25. Paris: Memoires du Museum national d'Histoire naturelle, 9-40.
  • Bouchet P, Rocroi J-P, Hausdorf B, Kaim A, Kano Y, Nutzel A, Parkhaev P, Schrodl M, Strong EE. 2017. Revised classification, nomenclator and typification of gastropod and monoplacophoran families. Malacologia 61: 1-526.
  • Castelin M, Lorion J, Brisset J, Cruaud C, Maestrati P, Utge J, Samadi S. 2012. Speciation patterns in gastropods with long-lived larvae from deep-sea seamounts. Molecular Ecology 21: 4828-4853.
  • Chen C, Copley JT, Linse K, Rogers AD. 2015. Low connectivity between 'scaly-foot gastropod' (Mollusca: Peltospiridae) populations at hydrothermal vents on the southwest Indian Ridge and the central Indian Ridge. Organisms Diversity & Evolution 15: 663-670.
  • Chen C, Linse K. 2020. From wood to vent: first cocculinid limpet associated with hydrothermal activity discovered in the Weddell Sea. Antarctic Science 32: 354-366.
  • Chisholm LA, Morgan JAT, Adlard RD, Whittington ID. 2001 . Phylogenetic analysis of the Monocotylidae ( Monogenea) inferred from 28S rDNA sequences. International Journal for Parasitology 31: 1537-1547.
  • Colgan DJ, McLauchlan A, Wilson GDF, Livingston SP, Edgecombe GD, Macaranas J, Cassis G, Gray MR. 1998. Histone H3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology 46: 419-437.
  • Costello MJ, Coll M, Danovaro R, Halpin P, Ojaveer H, Miloslavich P. 2010. A census of marine biodiversity knowledge, resources, and future challenges. PLoS One 5: e12110.
  • Coykendall DK, Johnson SB, Karl SA, Lutz RA , Vrijenhoek RC. 2011. Genetic diversity and demographic instability in Riftia pachyptila tubeworms from eastern Pacific hydrothermal vents. BMC Evolutionary Biology 11: 96.
  • Cunha MR, Matos FL, Genio L, Hilario A, Moura CJ, Ravara A, Rodrigues CF. 2013. Are organic falls bridging reduced environments in the deep sea? - Results from colonization experiments in the Gulf of Cadiz. PLoS One 8: e76688.
  • Dall WH. 1882. On certain limpets and chitons from the deep waters off the eastern coast of the United States. Proceedings of the United States National Museum 4: 400-414.
  • Danovaro R, Fanelli E, Canals M, Ciuffardi T, Fabri MC, Taviani M, Argyrou M, Azzurro E, Bianchelli S, Cantafaro A, Carugati L, Corinaldesi C, De Haan WP, Dell'Anno A, Evans J, Foglini F, Galil B, Gianni M, GorenM ,GrecobS ,GrimaltJ ,Guell-BujonsQ ,JadaudA, Knittweis L, Lopez JL, Sanchez-Vidal A, Schembrij PJ, Snelgrove P, Vaz S, the IDEM Consortium, Angeletti L, Barsanti M, Borg JA, Bosso M, Brind'Amour A, Castellan G, Conte F, Delbono I, Galgani F, Morgana G, Prato S, Schirone A, Soldevila E. 2020. Towards a marine strategy for the deep Mediterranean Sea: analysis of current ecological status. Marine Policy 112: 103781.
  • Distel DL, Baco AR, Chuang E, Morrill W, Cavanaugh C, Smith CR. 2000. Do mussels take wooden steps to deep-sea vents? Nature 403: 725-726.
  • Ehrlich H, Etnoyer P, Litvinov SD, Olennikova MM, Domaschke H, Hanke T, Born R, Meissner H, Worch H. 2006. Biomaterial structure in deep-sea bamboo coral (Anthozoa: Gorgonacea: Isididae): perspectives for the development of bone implants and templates for tissue engineering. Materialwissenschaft und Werkstofftechnik 37: 552-557.
  • FlemingCA. 1948. New species and genera of marine Mollusca from the Southland fiords. Transactions and Proceedings of the Royal Society of New Zealand 77: 72-92.
  • Felsenstein J. 1985. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39: 783-791.
  • Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
  • FujiwaraY, Kawato M, Noda C, Kinoshita G, YamanakaT, Fujita Y, Uematsu K, Miyazaki J-I. 2010. Extracellular and mixotrophic symbiosis in the whale-fall mussel Adipicola pacifica: a trend in evolution from extra- to intracellular symbiosis. PLoS One 5: e11808.
  • HarbourRP, SmithCR, Simon-NutbrownC, CecchettoM , Young E, Coral C, Sweetman AK. 2021. Biodiversity, community structure and ecosystem function on kelp and wood falls in the Norwegian deep sea. Marine Ecology Progress Series 657: 73-91.
  • Hasegawa K. 1997. Sunken wood-associated gastropods collected from Suruga Bay, Pacific side of the central Honshu, Japan, with descriptions of 12 new species. National Science Museum Monographs 12: 59-123.
  • HasegawaK. 2009. Upper bathyal gastropods of the Pacific coast of northern Honshu, Japan, chiefly collected by R/V Wakataka - maru. In: Fujita T, ed.Deep-sea fauna and pollutants off Pacific coast of northern Japan, Vol. 39. National Museum of Nature and Science Monographs. Tokyo: National Museum of Nature, 225-383.
  • Haszprunar G. 1987. Anatomy and affinities of cocculinid limpets (Mollusca, Archaeogastropoda). Zoologica Scripta 16: 305-324.
  • Hinsinger DD, Debruyne R, Thomas M, Denys GPJ, Mennesson M, Utge J, DettaiA. 2015. Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms. DNA Barcodes 3: 170-186.
  • Hilario A, Metaxas A, Gaudron SM, Howell KL, Mercier A , Mestre NC, Ross RE, Thurnherr AM, Young C. 2015. Estimating dispersal distance in the deep sea: challenges and applications to marine reserves. Frontiers in Marine Science 2: 6.
  • Horsakova V, Nekola JC, Horsak M. 2020. Integrative taxonomic consideration of the Holarctic Euconulus fulvus group of land snails (Gastropoda, Stylommatophora). Systematics and Biodiversity 18: 142-160.
  • Kano Y, Takano T, Schwabe E, Waren A. 2016. Phylogenetic position and systematics of the wood-associate limpet genus Caymanabyssia and implications for ecological radiation into deep-sea organic substrates by lepetelloid gastropods. Marine Ecology 37: 1116-1130.
  • Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772-780.
  • Kiel S, Goedert JL. 2006. A wood-fall association from Late Eocene deep-water sediments of Washington State, USA. Palaios 21: 548-556.
  • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16: 111-120.
  • Kuroda T, Habe T. 1949. On the gastropod genus Cocculina from Japan. Venus (Japan Journal of Malacology) 15: 58-67.
  • Leal JH, Harasewych MG. 1999. Deepest Atlantic molluscs: hadal limpets (Mollusca, Gastropoda, Cocculiniformia) from the northern boundary of the Caribbean Plate. Invertebrate Biology 118: 116-136.
  • Lee H, Chen W-J, Puillandre N, Aznar-Cormano L, Tsai M-H, Samadi S. 2019. Incorporation of deep-sea and small-sized species provides new insights into gastropods phylogeny. Molecular Phylogenetics and Evolution 135: 136-147.
  • Lesicki A. 1998. Checklist of gastropod species referred to the order Cocculiniformia Haszprunar, 1987 (Gastropoda: Cocculinoidea et Lepetelloidea) with some remarks on their food preferences. Folia Malacologica 6: 47-62.
  • Lorion J, Buge B, Cruaud C, Samadi S. 2010. New insights into diversity and evolution of deep-sea Mytilidae (Mollusca: Bivalvia). Molecular Phylogenetics and Evolution 57: 71-83.
  • Lorion J, Duperron S, Gros O, Cruaud C, Samadi S. 2009. Several deep-sea mussels and their associated symbionts are able to live both on wood and on whale falls. Proceedings of the Royal Society B: Biological Sciences 276: 177-185.
  • Lorion J, Kiel S, Faure B, Kawato M, Ho SYW, Marshall B, Tsuchida S, Miyazaki J-I, Fujiwara Y. 2013. Adaptive radiation of chemosymbiotic deep-sea mussels. Proceedings of the Royal Society B: Biological Sciences 280: 20131243.
  • Marshall BA. [1985]1986. Recent and Tertiary Cocculinidae and Pseudococculinidae (Mollusca: Gastropoda) from New Zealand and New South Wales. New Zealand Journal of Zoology 12: 505-546.
  • Marshall BA. 1994. Deep-sea gastropods from the New Zealand region associated with Recent whale bones and an Eocene turtle. The Nautilus 108: 1-8.
  • Martens E. 1904. Die beschalten Gastropoden der deutschen Tiefsee-Expedition 1898-1899.A. Systematisch-geographischer Teil. Wissenschaftliche Ergebnisse der deutschen TiefseeExpedition auf dem Dampfer "Valdivia" 7: 1-146.
  • McClainCR, HardySM. 2010. The dynamics of biogeographic ranges in the deep sea. Proceedings of the Royal Society B: Biological Sciences 277: 3533-3546.
  • McLean JH. 1987. Taxonomic descriptions of cocculinid limpets (Mollusca, Archaeogastropoda): two new species and three rediscovered species. Zoologica Scripta 16: 325-333.
  • McLean JH, Harasewych MG. 1995. Review of western Atlantic species of cocculinid and pseudococculinid limpets, with descriptions of new species (Gastropoda: Cocculiniformia). Contributions in Science, Natural History Museum of Los Angeles County 453: 1-33.
  • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 November 2010, New Orleans, LA, 1-8.
  • Moskalev LI. 1976. Concerning the generic diagnostics of the Cocculinidae (Gastropoda, Prosobranchia). Trudy Instituta Okeanologii Imeni P.P. Shirshov, Akademiya Nauk USSR 99: 59-70. [in Russian; English translation by Shkurkin GV.1978].
  • Nantarat N, Sutcharit C, Tongkerd P, Wade CM, Naggs F, Panha S. 2019. Phylogenetics and species delimitations of the operculated land snail Cyclophorus volvulus (Gastropoda: Cyclophoridae) reveal cryptic diversity and new species in Thailand. Scientific Reports 9: 7041.
  • OksanenJ ,BlanchetFG ,FriendlyM ,KindtR ,LegendreP , McGlinn D, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHH, Szoecs E, Wagner H. 2019. Vegan: community ecology package. R package version 2.5-6. Available at: https://CRAN.R-project.org/package=vegan
  • Pante E, Corbari L, Thubaut J, Chan T-Y, Mana R, Boisselier M-C, Bouchet P, Samadi S. 2012. Exploration of the deep-sea fauna of Papua New Guinea. Oceanography 25: 214-225.
  • Pante E, Puillandre N, Viricel A, Arnaud-Haond S, Aurelle D, Castelin M, Chenuil A, Destombe C, Forcioli D, Valero M, Viard F, Samadi S. 2015. Species are hypotheses: avoid connectivity assessments based on pillars of sand. Molecular Ecology 24: 525-544.
  • Plouviez S, Shank TM, Faure B, Daguin-Thiebaut C, Viard F, Lallier FH, Jollivet D. 2009. Comparative phylogeography among hydrothermal vent species along the East Pacific Rise reveals vicariant processes and population expansion in the south. Molecular Ecology 18: 3903-3917.
  • Plum C, Pradillon F, Fujiwara Y, Sarrazin J. 2017. Copepod colonization of organic and inorganic substrata at a deep-sea hydrothermal vent site on the Mid-Atlantic Ridge. Deep Sea Research Part II: Topical Studies in Oceanography 137: 335-348.
  • Ponder WF, Lindberg DR. 1997. Towards a phylogeny of gastropod molluscs: an analysis using morphological characters. Zoological Journal of the Linnean Society 119: 83-265.
  • Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler AP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
  • Puillandre N, FedosovAE, Zaharias P, Aznar-Cormano L, Kantor YI. 2017. A quest for the lost types of Lophiotoma (Gastropoda: Conoidea: Turridae): integrative taxonomy in a nomenclatural mess. Zoological Journal of the Linnean Society 181: 243-271.
  • Puillandre N, Lambert A, Brouillet S, Achaz G. 2012a. ABGD, automatic barcode gap discovery for primary species delimitation. Molecular Ecology 21: 1864-1877.
  • Puillandre N, Modica MV, Zhang Y, Sirovich L , Boisselier M-C, Cruaud C, Holford M, Samadi S. 2012b. Large-scale species delimitation method for hyperdiverse groups. Molecular Ecology 21: 2671-2691.
  • Rambaut A. 1996. Se-al: sequence alignment editor version 1.0 a1. Oxford: University of Oxford.
  • Rambaut A, Suchard MA, Xie D, Drummond AJ. 2014. Tracer v.1.6. Available at: http://beast.bio.ed.ac.uk/Tracer.
  • Razkin O, Gomez-Moliner BJ, Vardinoyannis K , Martinez-Orti A, Madeira MJ. 2017. Species delimitation for cryptic species complexes: case study of Pyramidula (Gastropoda, Pulmonata). Zoologica Scripta 46: 55-72.
  • Ronquist F, Teslenko M, Van der Mark P, Ayres DL, Darling A, Hohna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61: 539-542.
  • Saeedi H, Bernardino AF, Shimabukuro M, Falchetto G, Sumida PYG. 2019. Marcofaunal community structure and biodiversity patterns based on a wood-fall experiment in the deep south-west Atlantic. Deep Sea Research Part I: Oceanographic Research Papers 145: 73-82.
  • Samadi S, Corbari L, Lorion J, Hourdez S, Haga T, Dupont J, Boisselier M-C, Richer de Forges B. 2010. Biodiversity of deep-sea organisms associated with sunkenwood or other organic remains sampled in the tropical Indo- Pacific. Cahiers de Biologie Marine 51: 459-466.
  • Samadi S, Quemere E, Lorion J, Tillier A, von Cosel R, LopezP , CruaudC, CoulouxA, Boisselier-DubayleM-C. 2007. Molecular phylogeny in mytilids supports the wooden steps to deep-sea vents hypothesis. Comptes Rendus Biologies 330: 446-456.
  • Schepman MM. 1908. The Prosobranchia of the Siboga Expedition. Part I: Rhipidoglossa and Docoglossa. Siboga Expedition 49a: 1-98.
  • Soltwedel T , Guilini K , Sauter E , Schewe I , Hasemann C. 2018. Local effects of large food-falls on nematode diversity at an Arctic deep-sea site: results from an in situ experiment at the deep-sea observatory HAUSGARTEN. Journal of Experimental Marine Biology and Ecology 502: 129-141.
  • Souza BHM, Passos FD, Shimabukuro M, Sumida PYG. 2021. An integrative approach distinguishes three new species of Abyssochrysoidea (Mollusca: Caenogastropoda) associated with organic falls of the deep south-west Atlantic. Zoological Journal of the Linnean Society 191: 748-771.
  • Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
  • Stow DAV, Faugeres J-C, Howe JA, Pudsey CJ, Viana AR. 2002. Bottom currents, contourites and deep-sea sediment drifts: current state-of-the-art. Geological Society London Memoirs 22: 7-20.
  • Strong EE, Harasewych MG, Haszprunar G. 2003. Phylogeny of the Cocculinoidea (Mollusca, Gastropoda). Invertebrate Biology 122: 114-125.
  • Stuart CT, Brault S, Rowe GT, Wei C-L, Wagstaff M, McClain CR, Rex MA. 2017. Nestedness and species replacement along bathymetric gradients in the deep sea reflect productivity: a test with polychaete assemblages in the oligotrophic north-west Gulf of Mexico. Journal of Biogeography 44: 548-555.
  • Tang CQ, Humphreys AM, Fontaneto D, Barraclough TG. 2014. Effects of phylogenetic reconstruction method on the robustness of species delimitation using single-locus data. Methods in Ecology and Evolution 5: 1086-1094.
  • Thiele J. 1909. Cocculinoidea und die Gattungen Phenacolepas und Titiscania. Systematisches Conchylien-Cabinet von Martini & Chemnitz 2 11a: 1-48.
  • Thiele J. 1925. Prosobranchia.In: KukenthalW, KrumbachT, eds. Handbuch der zoologie. Berlin: Walter de Gruyter & Co., 40-94.
  • Thubaut J, Puillandre N, Faure B, Cruaud C, Samadi S. 2013. The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae). Ecology and Evolution 3: 4748-4766.
  • Turner RD. 1977. Wood, mollusks, and deep-sea food chains. American Malacological Union Bulletin 1977: 13-19.
  • Waren A. 1996. New and little known Mollusca from Iceland and Scandinavia 3. Sarsia 81: 197-245.
  • Waren A. 2011. Molluscs on biogenic substrates. In: Bouchet P, Le Guyader H, Pascal O, eds. The natural history of Santo. Paris: Museum National d'Histoire Naturelle and Pro- Nature international; Marseille: IRD, 438-448.
  • Watson RB. 1886. Report on the Scaphopoda and Gastropoda collected by H.M.S. Challenger during the years 1873-1876. Report on the scientific results of the voyage of the H.M.S. Challenger, 1873-1876. Zoology 15: 1-680.
  • Wolff T. 1979. Macrofaunal utilization of plant remains in the deep sea. Sarsia 64: 117-143.
  • Yahagi T, Fukumori H, Waren A, Kano Y. 2019. Population connectivity of hydrothermal-vent limpets along the northern Mid-Atlantic Ridge (Gastropoda: Neritimorpha: Phenacolepadidae). Journal of the Marine Biological Association of the UK 99: 179-185.
  • Yahagi T, Thaler AD, Van Dover CL, Kano Y. 2020. Population connectivity of the hydrothermal-vent limpet Shinkailepas tollmanni in the southwest Pacific (Gastropoda: Neritimorpha: Phenacolepadidae). PLoS One 15: e0239784.
  • Yahagi T, Watanabe HK, Kojima S, Kano Y. 2017. Do larvae from deep-sea hydrothermal vents disperse in surface waters? Ecology 98: 1524-1534.
  • Young CM, Emson RH, Rice ME, Tyler PA. 2013. A paradoxical mismatch of fecundity and recruitment in deep-sea opportunists: cocculinid and pseudococculinid limpets colonizing vascular plant remains on the Bahamian Slope. Deep-Sea Research Part I-Topical Studies in Oceanography 92: 36-45.
  • Young CM, He R, Emlet RB, Li Y, Qian H, Arellano SM, Gaest AV, Bennett KC, Wolf M, Smart TI, Rice ME. 2012. Dispersal of deep-sea larvae from the intra-American seas: simulations of trajectories using ocean models. Integrative and Comparative Biology 52: 483-496.
  • Zaharias P, Kantor Y, Fedosov AE, Criscione F, Hallan A, Kano Y, Bardin J, Puillandre N. 2020. Just the once will not hurt: DNA suggests species lumping over two oceans in deep-sea snails (Cryptogemma). Zoological Journal of the Linnean Society 190: 532-557.
  • Zhang JJ, Kapli P, Pavlidis P, Stamatakis A. 2013. A general species delimitation method with applications to phylogenetic placements. Bioinformatics 29: 2869-2876.
  • Zhang K, Sun J, XuT , Qiu J-W, Qian P-Y. 2021. Phylogenetic relationships and adaptation in deep-sea mussels: insights from mitochondrial genomes. International Journal of Molecular Sciences 22: 1900.
  • Zhang SQ, Zhang SP. 2018. Cocculina delphinicula sp. nov., a new cocculinid species from whale bone in the East China Sea (Gastropoda: Cocculiniformia). Zootaxa 4455: 189-195.