GFlow: GFlow: for circuit theory-based connectivity
Description
Software for modeling circuit theory-based connectivity at any scale. We developed GFlow to solve large ecological problems in a High Performance Computing environment. If solving a small problem or if you are willing to sacrifice some performance, it can be deployed on a desktop computer.
v. 01.2.3 Updates
Added options for printing progress of simulation and for cleanly exiting simulation. Documented optional execution flags. Updated input files.
- Note: If having difficulty assigning arguments to flags, please check for the most recent description in execute_example.sh on the main repo as this is actively being edited for clarity.
v. 0.1.2 Updates Updated new flags for effective resistance (effective_resistance), convergence factor (converge_at), and shuffle node pairs (shuffle_node_pairs)
Files
GFlow-v0.1.3-alpha.zip
Files
(1.9 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/Pbleonard/GFlow/tree/v0.1.3-alpha (URL)
References
- Shah, V. B., and B. H. McRae. 2008. Circuitscape : A Tool for Landscape Ecology. Pages 62–65in G. Varoquaux, T. Vaught, and J. Millman, editors.Proceedings of the 7th Python in Science Conference. Conference Proceedings.
- McRae, B. H. 2006. Isolation by resistance. Evolution 60:1551–1561.