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Published August 23, 2016 | Version v0.1.3-alpha
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GFlow: GFlow: for circuit theory-based connectivity

  • 1. Clemson University

Description

Software for modeling circuit theory-based connectivity at any scale. We developed GFlow to solve large ecological problems in a High Performance Computing environment. If solving a small problem or if you are willing to sacrifice some performance, it can be deployed on a desktop computer.

v. 01.2.3 Updates

Added options for printing progress of simulation and for cleanly exiting simulation. Documented optional execution flags. Updated input files.

  • Note: If having difficulty assigning arguments to flags, please check for the most recent description in execute_example.sh on the main repo as this is actively being edited for clarity.

v. 0.1.2 Updates Updated new flags for effective resistance (effective_resistance), convergence factor (converge_at), and shuffle node pairs (shuffle_node_pairs)

Files

GFlow-v0.1.3-alpha.zip

Files (1.9 MB)

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Additional details

Related works

References

  • Shah, V. B., and B. H. McRae. 2008. Circuitscape : A Tool for Landscape Ecology. Pages 62–65in G. Varoquaux, T. Vaught, and J. Millman, editors.Proceedings of the 7th Python in Science Conference. Conference Proceedings.
  • McRae, B. H. 2006. Isolation by resistance. Evolution 60:1551–1561.