Biodiversity Literature Repository
Published December 31, 2017 | Version v1
Journal article Restricted

Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini)

Creators

Description

Dong, Jiajia, Vicente, Natallia, Chintauan-Marquier, Ioana C., Ramadi, Cahyo, Dettai, Agnès, Robillard, Tony (2017): Complete mitochondrial genome and taxonomic revision of Cardiodactylus muiri Otte, 2007 (Gryllidae: Eneopterinae: Lebinthini). Zootaxa 4268 (1): 101-116, DOI: 10.11646/zootaxa.4268.1.6

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

Cites
Publication: 10.1111/2041-210X.12376 (DOI)
Publication: 10.1515/dna-2015-0019 (DOI)
Publication: 10.1093/bioinformatics/bts199 (DOI)
Publication: 10.1134/S0006297916100035 (DOI)
Publication: 10.1093/molbev/msu300 (DOI)
Publication: 10.1080/09524622.2014.996915 (DOI)
Publication: 10.1146/annurev.ecolsys.37.091305.110018 (DOI)
Publication: 10.1371/journal.pone.0037142 (DOI)
Publication: 10.1016/S1673-8527(09)60049-7 (DOI)
Has part
Taxonomic treatment: 10.5281/zenodo.4929011 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03D30832446BEE6FFF17FAF47FDEFAA0 (URL)
Taxonomic treatment: 10.5281/zenodo.4929015 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03D30832446BEE68FF17FA597E5DFE61 (URL)
Figure: 10.5281/zenodo.579937 (DOI)
Figure: 10.5281/zenodo.579938 (DOI)
Figure: 10.5281/zenodo.579939 (DOI)
Figure: 10.5281/zenodo.579940 (DOI)
Figure: 10.5281/zenodo.579941 (DOI)
Figure: 10.5281/zenodo.579942 (DOI)
Figure: 10.5281/zenodo.579943 (DOI)
Figure: 10.5281/zenodo.579944 (DOI)
Figure: 10.5281/zenodo.579945 (DOI)
Is source of
Dataset: http://www.gbif.org/dataset/97360f20-c368-4646-b2d0-865ae53e60da (URL)

References

  • Bernt, M., Donath, A., Juhling, F., Externbrink, F., Florentz, C., Fritzsch, G., Putz, J., Middendorf, M. & Stadler, P.F. (2013) MITOS: Improved de novo metazoan mitochondrial genome annotation. Molecular Phylogenetics and Evolution, 69, 313- 319.
  • Chintauan-Marquier, I.C., Legendre, F., Hugel, S., Robillard, T., Grandcolas, P., Nel, A., Zuccon, D. & Desutter-Grandcolas, L. (2016) Laying the foundations of evolutionary and systematic studies in crickets (Insecta, Orthoptera): a multilocus phylogenetic analysis. Cladistics, 32 (1), 54-81.
  • Cameron, S.L. (2014) Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny. Annual Review of Entomology, 59, 95-117.
  • Crampton-Platt, A., Yu, D.W., Zhou, X. & Vogler, A.P. (2016) Mitochondrial metagenomics: letting the genes out of the bottle. Gigascience, 5, 15.
  • Crampton-Platt, A., Timmermans, M.J., Gimmel, M.L., Kutty, S.N., Cockerill, T.D., Vun Khen, C. & Vogler, A.P. (2015) Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample. Molecular Biology and Evolution, 32, 2302-2316.
  • Gomez-Rodriguez, C., Crampton-Platt, A., Timmermans, M.J.T.N., Baselga, A. & Vogler, A.P. (2015) Validating the power of mitochondrial metagenomics for community ecology and phylogenetics of complex assemblages. Methods in Ecology and Evolution, 6, 883-894.
  • https://doi.org/10.1111/2041-210X.12376
  • Hinsinger, D.D., Debruyne, R., Thomas, M., Denys, G.P.J., Mennesson, M., Utage, J. & Dettai, A. (2015) Fishing for barcodes in the Torrent: from COI to complete mitogenomes on NGS platforms. DNA Barcodes, 3, 170-186. https://doi.org/10.1515/dna-2015-0019
  • Jia, H.Y., Guo, Y.F., Zhao, W.W. & Wang, K. (2014) Long-range PCR in next-generation sequencing: comparison of six enzymes and evaluation on the MiSeq sequencer. Scientific Reports, 4, 5737.
  • Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Mentjies, P. & Drummond, A. (2012) Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics, 28 (12), 1647-1649. https://doi.org/10.1093/bioinformatics/bts199
  • Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution, 33, 1870-1874.
  • Konstantinov, Y.M., Dietrich, A., Weber-Lotfi, F., Ibrahim, N., Klimenko, E.S., Tarasenko, V.I., Bolotova, T.A. & Koulintchenko, M.V. (2016) DNA import into mitochondria. Biochemistry (Moscow), 81, 1044-1056. https://doi.org/10.1134/S0006297916100035
  • Nguyen, L.T., Schmidt, H.A., von Haeseler, A. & Minh, B.Q. (2015) IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies. Molecular Biology and Evolution, 32, 268-274. https://doi.org/10.1093/molbev/msu300
  • Ragge, D.R. & Reynolds, W.J. (1998) The songs of the grasshoppers and crickets of Western Europe. Harley Books, Colchester, 600 pp.
  • Robillard, T. & Desutter-Grandcolas, L. (2004a) High-frequency calling in Eneopterinae crickets (Orthoptera, Grylloidea, Eneopteridae): adaptive radiation revealed by phylogenetic analysis. Biological Journal of the Linnean Society, 83, 577- 584.
  • Robillard, T. & Desutter-Grandcolas, L. (2004b) Phylogeny and the modalities of acoustic diversification in extant Eneopterinae (Insecta, Orthoptera, Grylloidea, Eneopteridae). Cladistics, 20, 271-293.
  • Robillard, T., ter Hofstede, H.M., Orivel, J. & Vicente, N.M. (2015) Bioacoustics of the Neotropical Eneopterinae (Orthoptera, Grylloidea, Gryllidae). Bioacoustics-the International Journal of Animal Sound and Its Recording, 24, 123-143. https://doi.org/10.1080/09524622.2014.996915
  • Robillard, T. Gorochov, A.V., Poulain, S. & Suhardjono, Y.R. (2014) Revision of the cricket genus Cardiodactylus (Orthoptera, Eneopterinae, Lebinthini): the species from both sides of the Wallace line, with description of 25 new species. Zootaxa, 3854 (1), 1-104.
  • Robillard, T., Montealegre-Z, F., Desutter-Grandcolas, L., Grandcolas, P. & Robert, D. (2013) Mechanisms of high-frequency song generation in brachypterous crickets and the role of ghost frequencies. Journal of Experimental Biology, 216, 2001- 2011.
  • Schattner, P., Brooks, A.N. & Lowe, T.M. (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Research, 33, 686-689. [W686-689]
  • Simon, C., Buckley, T.R., Frati, F., Stewart, J.B. & Beckenbach, A.T. (2006) Incorporating Molecular Evolution into Phylogenetic Analysis, and a New Compilation of Conserved Polymerase Chain Reaction Primers for Animal Mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics, 37, 545-579. https://doi.org/10.1146/annurev.ecolsys.37.091305.110018
  • Specht R. (2009) Avisoft-SASLab Pro: Sound Analysis and Synthesis Laboratory. Avisoft Bioacoustics, Berlin. [software]
  • Song, H.J., Amedegnato, C., Cigliano, M.M., Desutter-Grandcolas, L., Heads, S.W., Huang, Y., Otte, D. & Whiting, M.F. (2015) 300 million years of diversification: elucidating the patterns of orthopteran evolution based on comprehensive taxon and gene sampling. Cladistics, 31, 621-651.
  • Wolff, J.N., Shearman, D.C., Brooks, R.C. & Ballard, J.W. (2012) Selective enrichment and sequencing of whole mitochondrial genomes in the presence of nuclear encoded mitochondrial pseudogenes (numts). PLoS One, 7, e37142. https://doi.org/10.1371/journal.pone.0037142
  • Yang, J., Ren, Q. & Huang, Y. (2016a) Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes. Zootaxa, 4092, 529-547.
  • Yang, J., Ye, F. & Huang, Y. (2016b) Mitochondrial genomes of four katydids (Orthoptera: Phaneropteridae): New gene rearrangements and their phylogenetic implications. Gene, 575, 702-711.
  • Zhou, J.X., Jia, Y.C., Yang, X.C. & Li, Q. (2015) The complete mitochondrial genome of the black field cricket, Teleogryllus oceanicus. Mitochondrial DNA, 2015, 1-2.
  • Zhou, Z., Ye, H., Huang, Y. & Shi, F. (2010) The phylogeny of Orthoptera inferred from mtDNA and description of Elimaea cheni (Tettigoniidae: Phaneropterinae) mitogenome. Journal of Genetics and Genomics, 37, 315-324. https://doi.org/10.1016/S1673-8527(09)60049-7