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Published August 5, 2014 | Version v1
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Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis

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Churchill, Morgan, Boessenecker, Robert W., Clementz, Mark T. (2014): Colonization of the Southern Hemisphere by fur seals and sea lions (Carnivora: Otariidae) revealed by combined evidence phylogenetic and Bayesian biogeographical analysis. Zoological Journal of the Linnean Society 172 (1): 200-225, DOI: 10.1111/zoj.12163, URL: http://dx.doi.org/10.1111/zoj.12163

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urn:lsid:plazi.org:pub:A141546FFFF91305FFD4C030AD7D0B59

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Figure: 10.5281/zenodo.5312676 (DOI)
Figure: 10.5281/zenodo.5312680 (DOI)
Figure: 10.5281/zenodo.5312682 (DOI)
Figure: 10.5281/zenodo.5312686 (DOI)
Figure: 10.5281/zenodo.5312688 (DOI)
Figure: 10.5281/zenodo.5312692 (DOI)
Figure: 10.5281/zenodo.5312694 (DOI)
Figure: 10.5281/zenodo.5312698 (DOI)
Figure: 10.5281/zenodo.5312700 (DOI)

References

  • Adam PJ, Berta A. 2002. Evolution of prey capture strategies and diet in the Pinnipedimorpha (Mammalia, Carnivora). Oryctos 4: 83-107.
  • Arnason U, Gullberg A, Janke A, Kullberg M, Lehman N, Petrov EA, Vainola R. 2006. Pinniped phylogeny and a new hypothesis for their origin and dispersal. Molecular Phylogenetics and Evolution 41: 345-354.
  • Avery G, Klein RG. 2011. Review of fossil phocid and otariid seals from the southern and western coasts of South Africa. Transactions of the Royal Society of South Africa 66: 14-24.
  • Barnes LG. 1989. A new enaliarctine pinniped from the Astoria Formation, Oregon, and a classification of the Otariidae (Mammalia: Carnivora). Contributions in Science, Natural History Museum of Los Angeles County 403: 1-26.
  • Barnes LG, Ray CE, Koretsky IA. 2006. A new Pliocene sea lion Proterozetes ulysses (Mammalia: Otariidae) from Oregon, U.S.A. In: Csiki Z, ed. Mesozoic and Cenozoic vertebrates and paleoenvironments: tributes to the career of Prof. Dan Grigorescu. Bucharest: Ars Docendi, 57-77.
  • Berta A, Churchill M. 2012. Pinniped taxonomy: review of currently recognized species and subspecies, and evidence used for their description. Mammal Review 42: 207-234.
  • Berta A, Demere TA. 1986. Callorhinus gilmorei n. sp., (Carnivora: Otariidae) from the San Diego Formation (Blancan) and its implications for otariid phylogeny. Transactions of the San Diego Society of Natural History 21: 111- 126.
  • Berta A, Wyss AR. 1994. Pinniped phylogeny. In: Berta A, Demere TA, eds. Contributions in marine mammal paleontology honoring Frank C. Whitmore, Jr.: Proceedings of the San Diego Society of Natural History. 29: 33-56.
  • Bininda-Emonds ORP, Gittleman JL, Purvis A. 1999. Building large trees by combining phylogenetic information: a complete phylogeny of extant Carnivora. Biological Review 74: 143-175.
  • Bininda-Emonds ORP, Russell AP. 1996. A morphological perspective on the phylogenetic relationships of the extant phocid seals (Mammalia: Carnivora: Phocidae). Bonner zoologische Monographien 41: 1-256.
  • Boessenecker RW. 2011. New records of the fur seal Callorhinus (Carnivora: Otariidae) from the Plio-Pleistocene Rio Dell Formation of Northern California and comments on otariid dental evolution. Journal of Vertebrate Paleontology 31: 454-467.
  • Boessenecker RW, Churchill M. 2013. A Reevaluation of the morphology, paleoecology, and phylogenetic relationships of the enigmatic walrus Pelagiarctos. PLoS ONE 1: e54311.
  • Brierley CM, Fedorov AV. 2010. Relative importance of meridional and zonal sea surface temperature gradients for the onset of the ice ages and Pliocene-Pleistocene climate evolution. Paleoceanography 25: PA2214.
  • Brunner S. 2004. Fur seals and sea lions (Otariidae): identification of species and taxonomic review. Systematics and Biodiversity 3: 339-439.
  • Burridge CP. 2002. Antitropicality of Pacific fish: molecular insights. Environmental Biology of Fishes 65: 151-164.
  • Cozzuol MA. 2001. A 'northern' seal from the Miocene of Argentina: implications for phocid phylogeny and biogeography. Journal of Vertebrate Paleontology 21: 415-421.
  • Delisle I, Strobeck C. 2005. A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes. Molecular Phylogenetics and Evolution 37: 192-201.
  • Demere TA. 1994. The family Odobenidae: a phylogenetic analysis of living and fossil forms. In: Berta A, Demere TA, eds. Contributions in marine mammal paleontology honoring Frank C. Whitmore, Jr.: Proceedings of the San Diego Society of Natural History. 29: 99-123.
  • Demere TA, Berta A. 2005. New skeletal material of Thalassoleon (Otariidae: Pinnipedia) from the Late Miocene- Early Pliocene (Hemphillian) of California. Bulletin of the Florida Museum of Natural History 45: 379-411.
  • Demere TA, Berta A, Adams P. 2003. Pinnipedimorph evolutionary biogeography. Bulletin of the American Museum of Natural History 13: 32-76.
  • Drehmer CJ, Ribeiro AM. 1998. A temporal bone of an Otariidae (Mammalia: Pinnipedia) from the late Pleistocene of Rio Grande do Sul State, Brazil. Geociencias 3: 39-44.
  • Ehret DJ, MacFadden BJ, Jones DS, DeVries TJ, Foster DA, Gismondi RS. 2012. Origin of the white shark Carcharodon (Lamniformes: Lamnidae) based on recalibration of the Upper Neogene Pisco Formation of Peru. Palaeontology 55: 1139-1153.
  • Farrell JW, Raffi I, Janecek TR, Murray DW, Levitan M, Dadey KA, Emeis KC, Lyle M, Flores J, Hovan S. 1995. Late Neogene sedimentation pattern in the eastern equatorial Pacific Ocean. Proceedings of the Ocean Drilling Program, Scientific Results 138: 717-756.
  • Fedorov AV, Brierley CM, Lawrence KT, Liu Z, Dekens PS, Ravelo AC. 2013. Patterns and mechanisms of early Pliocene warmth. Nature 496: 43-49.
  • Fleming CA. 1953. The geology of the Wanganui Subdivision, Waverly and Wanganui sheet districts (N137 & N138). New Zealand Geological Survey Bulletin 52: 1-362.
  • Flynn JJ, Finarelli JA, Zehr S, Hsu J, Nedbal MA. 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Systematic Biology 54: 317-337.
  • Flynn JJ, Nedbal MA. 1998. Phylogeny of the Carnivora (Mammalia): congruence vs incompatibility among multiple data sets. Molecular Phylogenetics and Evolution 9: 414- 426.
  • Fulton TL, Strobeck C. 2010. Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line. Proceedings of the Royal Society of London B 277: 1065-1070.
  • Gill ED. 1968. Fossil sea lion as paleoclimatologic indicator. Palaeogeography, Palaeoclimatology, Palaeoecology 5: 235- 239.
  • Goloboff PA, Farris JS, Nixon KC. 2008. TNT, a free program for phylogenetic analysis. Cladistics 24: 774-786.
  • Hermsen EJ, Hendricks JR. 2008. W(h)ither fossils? Studying morphological character evolution in the age of molecular sequences. Annals of the Missouri Botanical Garden 95: 72-100.
  • Higdon JW, Bininda-Emonds ORP, Beck RMD, Ferguson SH. 2007. Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset. BMC Evolutionary Biology 7: 216.
  • Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754- 755.
  • Iverson SJ. 2008. Blubber. In: Perrin WF, Wursig B, Thewissen JGM, eds. Encyclopedia of marine mammals, 2nd edition. Burlington, MA: Academic Press, 115-120.
  • Jones KE, Goswami A. 2010. Quantitative analysis of the influences of phylogeny and ecology on phocid and otariid pinniped (Mammalia; Carnivora) cranial morphology. Journal of Zoology 280: 297-308.
  • Kellogg R. 1922. Pinnipeds from the Miocene and Pleistocene deposits of California. University of California Publications in Geological Sciences 13: 23-132.
  • Kim KC, Repenning CA, Morejohn GV. 1975. Specific antiquity of the sucking lice and the evolution of otariid seals: symposium on the Biology of the Seals at the University of Guelph, Guelph, Canada, 1972. Rapports et Proces-Verbaux des Reunions Conseil internationa pour l'exploration de la Mer 169: 544-549.
  • King JE. 1983a. The Ohope skull - a new species of Pleistocene sea lion from New Zealand. New Zealand Journal of Geology and Geophysics 17: 105-120.
  • King JE. 1983b. Seals of the world. Ithaca: Cornell University Press.
  • Kluge AG. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Systematic Zoology 38: 7-25.
  • Kohno N. 2006. A new Miocene odobenid (Mammalia: Carnivora) from Hokkaido, Japan, and its implications for odobenid phylogeny. Journal of Vertebrate Paleontology 26: 411-421.
  • Koretsky IA, Barnes LG. 2006. Pinniped evolutionary history and paleobiogeography. In: Csiki Z, ed. Mesozoic and Cenozoic vertebrates and paleoenvironments: tributes to the career of Prof. Dan Grigorescu. Bucharest: Ars Docendi, 143- 153.
  • Ksepka DT, Thomas DB. 2012. Multiple Cenozoic invasions of Africa by penguins (Aves, Sphenisciformes). Proceedings of the Royal Society of London B 279: 1027-1032.
  • Lamm KS, Redelings BD. 2009. Reconstructing ancestral ranges in historical biogeography: properties and prospects. Journal of Systematics and Evolution 47: 369-382.
  • Larkin M. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
  • Learmonth JA, MacLeod CD, Santos MB, Pierce GJ, Crick HQP, Robinson RA. 2006. Potential effects of climate change on marine mammals. Oceanography and Marine Biology: An Annual Review 44: 431-464.
  • Lindberg DR. 1991. Marine biotic interchange between the northern and southern hemispheres. Paleobiology 17: 308- 324.
  • Liwanag HEM, Berta A, Costa DP, Abney M, Williams TM. 2012. Morphological and thermal properties of mammalian insulation: the evolution of fur for aquatic living. Biological Journal of the Linnean Society 106: 926-939.
  • Lyons GM. 1937. Pinnipeds and a sea otter from the Point Mugu shell mound of California. University of California at Los Angeles Publications in Biological Sciences 1: 133-168.
  • Maddison WP. 1997. Gene trees in species trees. Systematic Biology 46: 523-536.
  • Maddison WP, Maddison DR. 2011. Mesquite: a modular system for evolutionary analysis, Version 2.72. Available at: http://mesquiteproject.org.
  • McCoy F. 1877. Prodromus of the paleontology of Victoria, Decade 5. Melbourne: Ferres, J.
  • Mitchell ED. 1968. The Mio-Pliocene pinniped Imagotaria. Journal of the Fisheries Research Board of Canada 25: 1843- 1900.
  • Mitchell ED, Tedford RH. 1973. The Enaliarctinae: a new group of extinct aquatic Carnivora and a consideration of the origin of the Otariidae. Bulletin of the American Museum of Natural History 151: 203-284.
  • Morejohn GV. 1975. A phylogeny of otariid seals based on morphology of the baculum: symposium on the biology of the Seals at the University of Guelph, Guelph, Canada, 1972. Rapports et Proces-Verbaux des Reunions Conseil internationa pour l'exploration de la Mer 169: 49-56.
  • Muizon C. 1978. Arctocephalus (Hydrarctos) lomasiensis, subgen. nov. et. nov sp., un nouvel Otariidae du Mio-Pliocene de Sacaco. Bulletin de I'Institute Francais d'Etudes Andines 7: 169- 189.
  • Muizon C, DeVries TJ. 1985. Geology and paleontology of late Cenozoic marine deposits in the Sacaco area (Peru). Geologische Rundschau 74: 547-563.
  • Nixon KC, Carpenter JM. 1996. On simultaneous analysis. Cladistics 12: 221-241.
  • Oliveira EV, Drehmer CJ. 1997. Sobre alguns restos de Pinnipedia-Otariidae (Mammalia, Carnivora) do Quaternario do Estado do Rio Grande do Sul, Brasil. Revista Universidade Guarulhos, Geociencias 2: 19-22.
  • Parrish RH, Serra R, Grant WS. 1989. The monotypic sardines, Sardina and Sardinops: their taxonomy, distribution, stock structure, and zoogeography. Canadian Journal of Fisheries and Aquatic Science 46: 2019-2036.
  • Pilleri G. 1990. Zweiter fund von Arctocephalus lomasiensis und Acrophoca longirostris (Pinnipedia) in der Pisco Formation Perus. Beitrage zur Palaontologie der Cetaceen und Pinnipedier der Pisco Formation Perus II: 237-240.
  • Posada D. 2008. jModelTest: phylogenetic model averaging. Molecular Biology and Evolution 25: 1253-1256.
  • Queiroz A, Gatesy J. 2006. The supermatrix approach to systematics. Trends in Ecology and Evolution 22: 34-41.
  • Ravelo AC, Dekens PS, McCarthy M. 2006. Evidence for El Nino-like conditions during the Pliocene. GSA Today 163: 4-11.
  • Repenning CA, Peterson RS, Hubbs CL. 1971. Contributions to the systematics of the southern fur seals, with particular reference to Juan Fernandez and Guadalupe species. Antarctic Research Series 18: 1-34.
  • Repenning CA, Ray CE, Grigorescu D. 1979. Pinniped biogeography. In: Gray J, Boucot AJ, eds. Historical biogeography, plate tectonics, and the changing environment. Corvallis: Oregon State University Press, 357-369.
  • Repenning CA, Tedford RH. 1977. Otarioid seals of the Neogene. Geological Survey Professional Paper 992: 1-87.
  • Rousselle G, Beltran C, Sicre M, Raffi I, De Rafelis M. 2013. Changes in sea-surface conditions in the equatorial Pacific during the middle Miocene-Pliocene as inferred from coccolith geochemistry. Earth and Planetary Science Letters 361: 412-421.
  • Sato JJ, Hosoda T, Wolsan M, Suzuki H. 2004. Molecular phylogeny of arctoids (Mammalia: Carnivora) with emphasis on phylogenetic and taxonomic positions of the ferretbadgers and skunks. Zoological Science 21: 111-118.
  • Sato JJ, Wolsan M, Suzuki H, Hosoda T, Yamaguchi Y, Hiyama K, Kobayashi M, Minami S. 2006. Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea. Zoological Science 23: 125-146.
  • Sivertsen E. 1954. A survey of the eared seals (Family Otariidae) with remarks on the Antarctic seals collected by M/K Norvegia in 1928-1929. Det Norske Videnskaps- Akademi i Oslo. Scientific results of the Norwegian Antarctic Expedition 1927-1928 et seqq. 36: 1-76.
  • Stirling I, Warneke RM. 1971. Implications of a comparison of the airborne vocalizations and some aspects of the behavior of the two Australian fur seals, Arctocephalus spp., on the evolution and present taxonomy of the genus. Australian Journal of Zoology 19: 227-241.
  • Trillmich F, Limberger D. 1985. Drastic effects of El Nino on Galapagos pinnipeds. Oecologia 67: 19-22.
  • Trillmich F, Ono KA, Costa DP, Delong RL, Feldkamp SD, Francis JM, Gentry RL, Heath CB, LeBoeuf BJ, Majluf P, York AE. 1991. The effects of El Nino on pinniped populations in the eastern Pacific. In: Trillmich F, Ono KA, eds. Pinnipeds and El Nino: responses to environmental stress. Berlin: Springer, 247-270.
  • Valenzuela-Toro AM, Gutstein CS, Varas-Malca RM, Suarez ME, Pyenson ND. 2013. Pinniped turnover in the South Pacific Ocean: new evidence from the Plio-Pleistocene of the Atacama Desert, Chile. Journal of Vertebrate Paleontology 33: 216-223.
  • Wara MW, Ravelo AC, Delaney ML. 2005. Permanent El Nino-like conditions during the Pliocene warm period. Science 309: 758-761.
  • Wiens JJ. 1999. Polymorphism in systematics and conservation biology. Annual Review of Ecology and Systematics 30: 327-362.
  • Wynen LP, Goldsworthy SD, Insley SJ, Adams M, Bickham JW, Francis J, Gallo JP, Hoelzel AR, Majluf P, White RWG, Slade R. 2001. Phylogenetic relationships within the eared seals (Otariidae: Carnivora): implications for the historical biogeography of the family. Molecular Phylogenetics and Evolution 21: 270-284.
  • Yonezawa T, Kohno N, Hasegawa M. 2009. The monophyletic origin of sea lions and fur seals (Carnivora: Otariidae) in the Southern Hemisphere. Gene 441: 89-99.
  • Yu Y, Harris AJ, He XJ. 2011. RASP (reconstruct ancestral state in phylogenies). Available at: http://mnh.scu.edu.cn/soft/ blog/RASP/.