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Published February 25, 2016 | Version v2.0.0-M7
Software Open

loquat: loquat v2.0.0-M7

  • 1. Era7 Bioinformatics
  • 2. oh no sequences! - Era7 bioinformatics

Description

  • Data mappings:

    • #45: Changed DataMappings remoteInput/Output from records to simple Maps
    • Added an option to the config to switch on/off input objects existence check
    • #44: Renamed DataMapping's id to label
    • #47: Added a logger message and some kind of progress output for the input objects existence check
    • #50: Instead of checking input objects object metadata, listing objects with the given prefix
    • #52: Added a check for missing/non-needed input/output data keys in the datamappings
  • Data processing:

    • #51: Fixed input objects handling by passing the map of (dataKey.label -> fileLocation) from worker to the processing context; this way context.inputFile lookup doesn't rely on conventions and return the actual file location
  • Self-termination:

    • #48: Added a time deadline for SQS polling
    • Added some logging and exception handling to the polling
  • Other fixes:

    • #49: Removed any worker instance state tagging for now; was causing RequestLimitExceeded on a big autoscaling group with quick tasks
    • #43: Changed log messages for downloads/uploads

Files

loquat-v2.0.0-M7.zip

Files (188.8 kB)

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Additional details