Published August 21, 2020 | Version v1
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The Indo-Pacific Amalda (Neogastropoda, Olivoidea, Ancillariidae) revisited with molecular data, with special emphasis on New Caledonia

  • 1. Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences, Leninski Prospect 33, 119071 Moscow.
  • 2. Institut de Systématique, Évolution, Biodiversité, ISYEB, UMR7205 (CNRS, EPHE, MNHN, UPMC), Muséum national d'histoire naturelle, Sorbonne Universités, 43 Rue Cuvier, 75231 Paris Cedex 05, France.

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Kantor, Yuri I., Castelin, Magalie, Fedosov, Alexander, Bouchet, Philippe (2020): The Indo-Pacific Amalda (Neogastropoda, Olivoidea, Ancillariidae) revisited with molecular data, with special emphasis on New Caledonia. European Journal of Taxonomy 706: 1-59, DOI: 10.5852/ejt.2020.706

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References

  • Bandelt H.-J., Forster P. & Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16: 37-48. https://doi.org/10.1093/oxfordjournals.molbev.a026036
  • Bouchet P. & Kantor Yu. I. 2004. New Caledonia: the major center of biodiversity for volutomitrid molluscs (Mollusca: Neogastropoda: Volutomitridae). Systematics and Biodiversity 1: 467-502. https://doi.org/10.1017/s1477200003001282
  • Bozzetti L. 2007. Due nuove Amalda (Gastropoda: Hypsogastropoda: Olividae) dalla Nuova Caledonia. Malacologia Mostra Mondiale 56: 14-16.
  • Cossignani T. 2013. Una nuova Amalda dalla Nuova Caledonia. Malacologia Mostra Mondiale 79: 25-26.
  • Cossignani T. 2015. Amalda hilgendorfi vezzaroi nuova ssp. Malacologia Mostra Mondiale 89: 24-25.
  • Cossmann M. 1899. Essais de paleoconchologie comparee. Vol. 3. Chez l'auteur et Comptoir geologique, Paris.
  • Fedosov A., Puillandre N., Kantor Yu. & Bouchet P. 2015. Phylogeny and systematics of mitriform gastropods (Mollusca: Gastropoda: Neogastropoda). Zoological Journal of the Linnean Society 175: 336-359. https://doi.org/10.1111/zoj.12278
  • Folmer O., Black M., Hoeh W., Lutz R. & Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
  • Galindo L.A., Puillandre N., Strong E.E. & Bouchet P. 2014. Using microwaves to prepare gastropods for DNA barcoding. Molecular Ecology Resources 14: 700-705. https://doi.org/10.1111/1755-0998.12231
  • Gemmel M.R. Trewick S.A., Hills S.F.K. & Morgan-Richards M. 2020. Phylogenetic topology and timing of New Zealand olive shells are consistent with punctuated equilibrium. Journal of Zoological Systematics and Evolutionary Research 58: 209-220. https://doi.org/10.1111/jzs.12342
  • Gratecap D. 2012. Le genre Amalda en Afrique australe. Xenophora 140: 19-29.
  • Gratecap D. 2014. Le genre Amalda en Nouvelle-Caledonie. Xenophora 146: 13-20.
  • Gratecap D. 2016a. Le genre Amalda en Australie. Xenophora 155: 13-20.
  • Gratecap D. 2016b. Le genre Amalda dans l'Ocean Indien et le Pacifique ouest. Xenophora 156: 4-15.
  • Hall T. 1999. BioEdit: a user friendly biological sequence alignment editor and analysis program for Windows 95/98 NT. Nucleic Acids Symposium Series 41: 95-98.
  • Hart M. 1995. Review of the genus Amalda from New Zealand with a description of a new species and the elevation of another subspecies to full species status. World Shells 13: 82-88.
  • Huelsenbeck J.P. & Ronquist F. 2001. MrBayes: bayesian inference of phylogeny. Bioinformatics 17, 754-755. https://doi.org/10.1093/bioinformatics/17.8.754
  • Kantor Yu.I., Fedosov A.E., Puillandre N. & Bouchet P. 2016. Integrative taxonomy approach to Indo- Pacific Olividae: new species revealed by molecular and morphological data. Ruthenica, Russian Malacological Journal 26: 123-144.
  • Kantor Yu.I., Fedosov A.E., Puillandre N., Bonillo C. & Bouchet P. 2017. Returning to the roots: morphology, molecular phylogeny and classification of the Olivoidea (Gastropoda: Neogastropoda). Zoological Journal of the Linnean Society 180: 493-541. https://doi.org/10.1093/zoolinnean/zlw003
  • Katoh K. & Toh H. 2010. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26: 1899-1900. https://doi.org/10.1093/bioinformatics/btq224
  • Katoh K., Rozewicki J. & Yamada K.D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20: 1160- 1166. https://doi.org/10.1093/bib/bbx108
  • Kilburn R.N. 1996. Two new species of Amalda from the Saya de Malha Bank. Molluscan Research 17: 21-25.
  • Kilburn R.N. & Bouchet P. 1988. The genus Amalda in New Caledonia (Mollusca, Gastropoda, Olividae, Ancillinae). Bulletin du Museum national d'histoire naturelle, ser. 4, 10, section A 2: 277-300.
  • Kira T. 1959. Coloured illustrations of the shells of Japan. Enlarged and revised edition. Hoikusha, Osaka.
  • Kira T. 1962. Shells of the Western Pacific in Color. Hoikusha, Osaka.
  • Kuroda T., Habe T. & Oyama K. 1971. The Sea Shells of Sagami Bay, collected by His Majesty the Emperor of Japan. Maruzen,Tokyo.
  • Martens E. von. 1897. Conchologischer Miscellen, Part 2. Archiv fiir Naturgeschichte 63: 157-180, pls 15-17.
  • Miller M.A., Pfeiffer W. & Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop (GCE), 14 Nov. 2010, New Orleans, LA: 1-8.
  • Ninomiya T. 1988. A new subgenus and five new species of the Ancillinae (Gastropoda: Olividae) from Southwestern Australia, Japan and Taiwan. Venus 47: 141-153.
  • Ninomiya T. 1990. A new subgenus and five new species of the Ancillinae (Gastropoda: Olividae) from Australia. Venus 49: 69-82.
  • Okutani T. 2000. (ed.) Marine Mollusks in Japan. Tokai Uniersity. Press, Tokyo.
  • Ponder W.F. 1968. Nomenclatural notes on some New Zealand rachiglossan gastropods with descriptions of five new species. Records of the Dominion Museum 6: 29-47.
  • Poppe G.T. 2008. Philippine Marine Molluscs. Vol. 2. Conchbooks, Hackenheim.
  • Powell A.W.B. 1967. Mollusca of the Kermadec Islands: Part 2. Records of the Auckland Institute and Museum 6: 197-199.
  • Puillandre N., Lambert A., Brouillet S. & Achaz G. 2012. ABGD, automatic barcode gap discovery for primary species delimitation. Molecular Ecology 21: 1864-1877. https://doi.org/10.1111/j.1365-294X.2011.05239.x
  • Rambaut A., Suchard M.A., Xie D. & Drummond A.J. 2014. Tracer v1.4. Available from http://beast.bio.ed.ac.uk/Tracer [accessed 22 Feb. 2020].
  • Reeve L.A. 1864. Monograph of the Genus Ancillaria. In: Conchologia Iconica, 15. London, Reeve. Available from https://www.biodiversitylibrary.org/page/10972403 [accessed 29 Jul. 2020].
  • Rosenberg G. 2009. Malacolog 4.1.1:A Database of Western Atlantic Marine Mollusca. [WWW database (version 4.1.1)] Available from http://www.malacolog.org/ [accessed 22 Feb. 2020].
  • Souverbie S.M. 1860a. Descriptions d'especes nouvelles de l'Archipel caledonien. Journal de Conchyliologie 8: 123-126, 204-207.
  • Souverbie S.M. 1860b. Descriptions d'especes nouvelles de l'Archipel caledonien. Journal de Conchyliologie 8: 311-326, pl. 11.
  • Sowerby III G.B. 1897. Appendix to Marine Shells of South Africa : a Catalogue of all the Known Species with References to Figures in Various Works, Descriptions of New Species, and Figures of such as are New, Little Known, or hitherto Unfigured. G.B. Sowerby, London.
  • Stamatakis A. 2014. RAxML Version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
  • Taki I. & Oyama K. 1954. Matajiro Yokoyama's the Pliocene and later faunas from the Kwanto Region in Japan. Palaeontological Society of Japan Special Papers 2: 1-68.
  • Tamura K., Peterson D., Peterson N., Stecher G., Nei M. & Kumar S. 2011. MEGA5: Molecular Evolutionary Genetics Analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 28: 2731-2739. https://doi.org/10.1093/molbev/msr121
  • Tsuchida E. 2017. Family Olivellidae. In: Okutani T. (ed.) Marine Mollusks in Japan, 2nd Edition, Vol. 2: 995-997. Tokai University Press, Tokyo.
  • van Pel P.L. 1989. Una nuova sottospecie del genere Amalda del Mar di Arafura. A new subspecies of the genus Amalda from the Arafura Sea (Gastropoda: Olividae). La Conchiglia 238-241: 13-15.
  • Voskuil R.P.A. 1991. The recent species of the genus Eburna Lamarck, 1801. Vita Marina 41: 49-55.
  • Voskuil R. et al. 2011. The Olividae and Olivellidae ScratchPad - the electronic catalogue of olivid diversity. Available from http://olivirv.myspecies.info/ [accessed 2 Jun. 2020].
  • Wilson B. 1994. Australian Marine Shells. Prosobranch Gastropods. Part Two (Neogastropoda). Odyssey Publishing, Hong Kong.
  • Yokoyama M. 1922. Fossils from the Upper Musashino of Kazusa and Shimosa. Journal of the College of Science, Imperial University, Tokyo 44: 1-200.