Published March 9, 2020
| Version v1
Journal article
Restricted
Phylogenetic relationships and systematics of a subclade of Mesoamerican emerald hummingbirds (Aves: Trochilidae: Trochilini)
Description
Hernández-Baños, Blanca E., Zamudio-Beltrán, Luz E., Milá, Borja (2020): Phylogenetic relationships and systematics of a subclade of Mesoamerican emerald hummingbirds (Aves: Trochilidae: Trochilini). Zootaxa 4748 (3): 581-591, DOI: 10.11646/zootaxa.4748.3.11
Files
Linked records
Oops! Something went wrong while fetching results.
Additional details
Identifiers
- URN
- urn:lsid:zoobank.org:pub:urn:lsid:zoobank.org:pub:EB15F98E-929F-445F-BD15-9AFE347B0537
- LSID
- urn:lsid:plazi.org:pub:FFF7FFE9FFFEFFAAFF87FFCBFFF33B01
References
- Amman, B.R. & Bradley, R.D. (2004) Molecular evolution in Baiomys (Rodentia: Sigmodontinae): evidence for a genetic subdivision in B. musculus. Journal of Mammalogy, 85, 162-166. https://doi.org/10.1644/1545-1542(2004)085<0162:MEIBRS>2.0.CO;2
- Arevalo, E., Davis, S.K. & Sites, J.W. (1994) Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology, 43, 387-418. https://doi.org/10.1093/sysbio/43.3.387
- Bleiweiss, R., Kirsch, J.A.W. & Matheus, J.C. (1997) DNA hybridization evidence for the principal lineages of hummingbirds (Aves: Trochilidae). Molecular Biology and Evolution, 14, 325-343. https://doi.org/10.1093/oxfordjournals.molbev.a025767
- Bleiweiss, R. (1998a) Origin of hummingbird faunas. Biological Journal of the Linnean Society, 65, 77-97. https://doi.org/10.1111/j.1095-8312.1998.tb00352.x
- Bleiweiss, R. (1998b) Tempo and mode of hummingbird evolution. Biological Journal of the Linnean Society, 65, 63-76. https://doi.org/10.1111/j.1095-8312.1998.tb00351.x
- Chesser, R.T., Burns, K.J., Cicero, C., Dunn, J.L., Kratter, A.W., Lovette, I.J., Rasmussen, P.C., Remsen Jr.J.V., Stotz, D.F., Winger, B.M. & Winker, K. (2018) Check-list of North American Birds. Online. American Ornithological Society. Available from: http://checklist.aou.org/taxa (accessed 27 January 2020)
- Coates, A.G. & Obando, J.A. (1996) The geologic evolution of the Central American isthmus. In: Jackson, J.B.C., Ludd, A.F. & Coates, A.G. (Eds.), Evolution and Environment in Tropical America. University of Chicago Press, Chicago, pp. 21-56.
- Daza, J.M., Castoe, T.A. & Parkinson, C.L. (2010) Using regional comparative phylogenetic data from snake lineages to infer historical processes in Middle America. Ecography, 33, 343-354. https://doi.org/10.1111/j.1600-0587.2010.06281.x
- Devitt, T.J. (2006) Phylogeography of the Western Lyresnake (Trimorphodon biscutatus): testing aridland biogeographical hypotheses across the Nearctic-Neotropical transition. Molecular Ecology, 15, 4387-4407. https://doi.org/10.1111/j.1365-294X.2006.03015.x
- Drummond, A.J. & Rambaut A. (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7 (1), 214. https://doi.org/10.1186/1471-2148-7-214
- Drummond, A.J., Suchard, M.A., Xie, D. & Rambaut, A. (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution, 29, 1969-1973. https://doi.org/10.1093/molbev/mss075
- Ellegren, H. (2007) Molecular evolutionary genomics of birds. Cytogenetic and Genome Research, 117, 120-130. https://doi.org/10.1159/000103172
- Fogden, M., Taylor, M. & Williamson, S.L. (2014) Hummingbirds: A Life Size Guide to Every Species. Harper Design, East Sussex, 400 pp.
- Gamez, N., Escalante, T., Rodriguez, G., Linaje, M. & Morrone, J.J. (2012) Caracterizacion biogeografica de la Faja Volcanica Transmexicana y analisis de los patrones de distribucion de su mastofauna. Revista Mexicana de Biodiversidad, 83, 258-272. https://doi.org/10.22201/ib.20078706e.2012.1.786
- Garcia-Deras, G.M., Cortes-Rodriguez, N., Honey-Escandon, M., Navarro-Siguenza, A.G., Garcia-Moreno, J. & Hernandez- Banos, B.E. (2008) Phylogenetic relationships within the genus Cynanthus (Aves: Trochilidae), with emphasis on C. doubledayi. Zootaxa, 1742 (1), 61-68. https://doi.org/10.11646/zootaxa.1742.1.5
- Gervais, P. (1835) Oiseaux-mouches. Ornismya Lesson. Magasin de Zoologie, Classe II, 1835, 46-49.
- Gerwin, J.A. & Zink, R.M. (1998) Phylogenetic patterns in the Trochilidae. The Auk, 115, 105-118. https://doi.org/10.2307/4089116
- Gill, F. & Donsker, D. (Eds.) (2019) IOC World Bird List. Version 9.2. Available from: https://www.worldbirdnames.org/ (accessed 12 January 2020) https://doi.org/10.14344/IOC.ML.9.2
- Gould, J. (1859) Description of four new species of hummingbirds from Mexico. Annals and Magazine of Natural History, Series 3, 4, 96-98. https://doi.org/10.1080/00222935908697093
- Graham, C.H., Parra, J.L., Rahbek, C. & McGuire, J.A. (2009) Phylogenetic structure in tropical hummingbird communities. Proceedings of the National Academy of Sciences, 106 (Supplement 2), 19673-19678. https://doi.org/10.1073/pnas.0901649106
- Gutierrez-Garcia, T.A. & Vazquez-Dominguez, E. (2012) Biogeographically dynamic genetic structure bridging two continents in the monotypic Central American rodent Ototylomys phyllotis. Biological Journal of the Linnean Society, 107, 593-610. https://doi.org/10.1111/j.1095-8312.2012.01966.x
- Gutierrez-Garcia, T.A. & Vazquez-Dominguez, E. (2013) Consensus between genes and stones in the biogeographic and evolutionary history of Central America. Quaternary Research, 79, 311-324. https://doi.org/10.1016/j.yqres.2012.12.007
- Hernandez-Banos, B.E., Zamudio-Beltran, L.E., Eguiarte-Fruns, L.E., Klicka, J. & Garcia Moreno, J. (2014) The Basilinna genus (Aves: Trochilidae): an evaluation based on molecular evidence and implications for the genus Hylocharis. Revista Mexicana de Biodiversidad, 85, 797-807. https://doi.org/10.7550/rmb.35769
- Howell, S.N.G. & Webb, S. (1995) A Guide to the Birds of Mexico and Northern Central America. Oxford University Press, Oxford, 851 pp.
- Huelsenbeck, J. & Ronquist, F. (2002) MrBayes 3: Bayesian analysis of phylogeny. San Diego, California. [program]
- Marshall, C.J. & Liebherr, J.K. (2000) Cladistic biogeography of the Mexican transition zone. Journal of Biogeography, 27, 203-216. https://doi.org/10.1046/j.1365-2699.2000.00388.x
- McGuire, J.A., Witt, C.C., Altshuler, D.L. & Remsen, Jr. J.V. (2007) Phylogenetic systematics and biogeography of hummingbirds: Bayesian and maximum likelihood analyses of partitioned data and selection of an appropriate partitioning strategy. Systematic Biology, 56, 837-856. https://doi.org/10.1080/10635150701656360
- McGuire, J.A., Witt, C.C., Remsen Jr.J.V., Dudley, R. & Altshuler, D.L. (2009) A higher-level taxonomy for hummingbirds. Journal of Ornithology, 150, 155-165. https://doi.org/10.1007/s10336-008-0330-x
- McGuire, J.A., Witt, C.C., Remsen, Jr.J.V., Corl, A., Rabosky, D.L., Altshuler, D.L. & Dudley, R. (2014) Molecular phylogenetics and the diversification of hummingbirds. Current Biology, 24, 910-916. https://doi.org/10.1016/j.cub.2014.03.016
- Pacheco, M.A., Battistuzzi, F.U., Lentino, M., Aguilar, R.F., Kumar, S. & Escalante, A.A. (2011) Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders. Molecular Biology and Evolution, 28, 1927-1942. https://doi.org/10.1093/molbev/msr014
- Peters, J.L. (1945) Check-list of the Birds of the World. Vol. V. Harvard University Press, Cambridge, Massachusetts, 306 pp.
- Posada, D. (2008) jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25, 1253-1256. https://doi.org/10.1093/molbev/msn083
- Rambaut, A. & Drummond, A. (2007) TreeAnnotator. Available from: http://beast.bio.ed.ac.uk/TreeAnnotator (accessed 26 January 2020)
- Rambaut, A., Suchard, M. & Drummond, A. (2013) Tracer. Version 1.6.0. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 26 January 2020)
- Ricklefs, R.E. & Bermingham, E. (2001) Nonequilibrium diversity dynamics of the Lesser Antillean avifauna. Science, 294 (5546), 1522-1524. https://doi.org/10.1126/science.1065005
- Ridgway, R. (1911) The birds of North and Middle America: Part V. U.S. National Museum Bulletin, 50, 368-373.
- Schuchmann, K.L. (1999) Hummingbirds. In: del Hoyo, J., Elliot, A. & Sargatal, J. (Eds.), Handbook of the Birds of the World. Vol. 5. Lynx Editions, Barcelona, pp. 468-680.
- Schuchmann, K.L. & Bonan, A. (2018) Hummingbirds (Trochilidae). In: del Hoyo, J., Elliott, A., Sargatal, J., Christie, D.A. & de Juana, E. (Eds.), Handbook of the Birds of the World Alive. Lynx Edicions, Barcelona.Available from: http://www.hbw. com/node/52268 (accessed 8 February 2018)
- Sibley, C.G. & Monroe Jr.B.L. (1990) Distribution and Taxonomy of Birds of the World. Yale University Press, New Haven, 1111 pp.
- Stiles, F.G. (1996) A new species of emerald hummingbird (Trochilidae, Chlorostilbon) from the Sierra de Chiribiquete, southeastern Colombia, with a review of the C. mellisugus complex. The Wilson Bulletin, 108, 1-27. Available from: http://www. jstor.org/stable/4163634 (accessed 15 January 2020)
- Stiles, F.G., Remsen, Jr. J.V. & McGuire, J.A. (2017) The generic classification of the Trochilini (Aves: Trochilidae): Reconciling taxonomy with phylogeny. Zootaxa, 4353 (3), 401-424. https://doi.org/10.11646/zootaxa.4353.3.1
- Sorenson, M.D., Ast, J.C., Dimcheff, D.E., Yuri, T. & Mindell, D.P. (1999) Primers for a PCR-based approach to mitochondrial genome sequencing in birds and other vertebrates. Molecular Phylogenetic and Evolution, 12, 105-114. https://doi. org/10.1006/mpev.1998.0602
- Suarez-Atilano, M.A., Burbrink, F. & Vazquez-Dominguez, E. (2014) Phylogeographical structure within Boa constrictor imperator across the lowlands and mountains of Central America and Mexico. Journal of Biogeography, 41, 2371-2384. https://doi.org/10.1111/jbi.12372
- Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599. https://doi.org/10.1093/molbev/msm092
- Zimmer, J.T. (1950) Studies of Peruvian birds #58. The genera Chlorostilbon, Thalurania, Hylocharis, and Chrysuronia. American Museum of Natural History Novitates, No. 1474, 1-12.