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Published October 7, 2015 | Version v1.4.7
Software Open

vsearch: VSEARCH 1.4.7

  • 1. University of Oslo
  • 2. Technische Universität
  • 3. University of Michigan
  • 4. Australian Centre for Ecogenomics

Description

Fixes a problem with searching for or clustering sequences with repeats. In this new version, vsearch will look at all words occurring at least once in the sequences in the initial step. Previously only words occurring exactly once were considered. In addition, vsearch now requires at least 10 words to be shared by the sequences, previously only 6 were required. If the query contains less than 10 words, all words must be present for a match. This change seems to lead to slightly reduced recall, but somewhat increased precision, ending up with slightly improved overall accuracy.

Files

vsearch-v1.4.7.zip

Files (277.1 kB)

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