Published December 31, 2015
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A new species of Ptychochromis from southeastern Madagascar (Teleostei: Cichlidae)
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Martinez, Christopher M., Arroyave, Jairo, Sparks, John S. (2015): A new species of Ptychochromis from southeastern Madagascar (Teleostei: Cichlidae). Zootaxa 4044 (1): 79-92, DOI: 10.11646/zootaxa.4044.1.4
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- Adams, D.C. & Otarola-Castillo, E. (2013) Geomorph: an R package for the collection and analysis of geometric morphometric shape data. Methods in Ecology and Evolution, 4, 393-399.
- http://dx.doi.org/10.1111/2041-210X.12035
- Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology, 215, 403-410.
- http://dx.doi.org/10.1016/S0022-2836(05)80360-2
- Bemis, W.E., Hilton, E.J., Brown, B., Arrindell, R., Richmond, A.M., Little, C.D., Grande, L., Forey, P.L. & Nelson, G.J. (2004) Methods for preparing dry, partially articulated skeletons of Osteichthyans, with notes on making Ridewood dissections of the cranial skeleton. Copeia, 2004, 603-609.
- http://dx.doi.org/10.1643/CI-03-054R1
- Benstead, J.P., de Rahm, P.H., Gattolliat, J., Gibson, F., Loiselle, P.V., Sartori, M., Sparks, J.S. & Stiassny, M.L.J. (2003) Conserving Madagascar's Freshwater Diversity. Bioscience, 53, 1101-1111.
- http://dx.doi.org/10.1641/0006-3568(2003)053[1101:CMFB]2.0.CO;2
- de Rham, P. & Nourissat, J. (2004) The endemic cichlids of Madagascar. French Cichlid Association, St. Julia, 191 pp.
- Edgar, R.C. (2004) MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113.
- http://dx.doi.org/10.1186/1471-2105-5-113
- Gunz, P. & Mitteroecker, P. (2013) Semilandmarks: a method for quantifying curves and surfaces. Histrix, 24, 103-109.
- Irwin, M.T, Wright, P.C., Birkinshaw C., Fisher, B.L., Gardner, C.J., Glos, J., Goodman, S.M., Loiselle, P., Rabeson, P., Raharison, J.-L., Raherilalao M.J., Rakotondravony, D., Raselimanana, A., Ratsimbazafy, J., Sparks, J.S., Wilme, L., Jorg, U. & Ganzhorn, J.U. (2010) Patterns of species change in anthropogenically disturbed forests of Madagascar. Biological Conservation, 143, 2351-2362.
- http://dx.doi.org/10.1016/j.biocon.2010.01.023
- Leviton, A.E., Gibbs, R.H., Heal, E. & Dawson, C.E. (1985) Standards in herpetology and ichthyology: Part I. Standard symbolic codes for institutional resource collections in herpetology and ichthyology. Copeia, 1985, 802-832.
- McMahan, C.D., Chakrabarty, P., Sparks, J.S., Smith, W.L. & Davis, M.P. (2013) Temporal patterns of diversification across global cichlid biodiversity (Acanthomorpha: Cichlidae). PLoS ONE, 8 (8), e71162.
- http://dx.doi.org/10.1371/journal.pone.0071162
- Miller, M., Pfeiffer, W. & Schwartz, T. (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Gateway Computing Environments Workshop (GCE) IEEE, 1-8, 80.
- http://dx.doi.org/10.1109/gce.2010.5676129
- R Core Team (2013) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. Available from: http://www.R-project.org/ (accessed 3 November 2015)
- Rohlf, F.J. (2013) tpsDIG2, v2.17. Freeware. Available from: http://life.bio.sunysb.edu/morph (accessed 3 November 2015)
- Sabaj Perez, M.H. (Ed.) (2014) Standard symbolic codes for institutional resource collections in herpetology and ichthyology: an Online Reference, Version 5.0 (22 September 2014) American Society of Ichthyologists and Herpetologists, Washington, D.C. Electronically accessible. Available from: http://www.asih.org/resources (accessed 3 November 2015)
- Sparks, J.S. (2002) Ptychochromis inornatus, a new cichlid (Teleostei: Cichlidae) from northwestern Madagascar, with a discussion of intrageneric variation in Ptychochromis. Copeia, 2002, 120-130.
- http://dx.doi.org/10.1643/0045-8511(2002)002[0120:PIANCT]2.0.CO;2
- Sparks, J.S. (2003) Taxonomic status of the Malagasy cichlid Ptychochromis grandidieri Sauvage 1882 (Teleostei: Cichlidae), including a molecular phylogenetic analysis of the ptychochromine cichlids. Ichthyological Exploration of Freshwaters, 14, 317-328.
- Sparks, J.S. (2004) Molecular phylogeny and biogeography of the Malagasy and South Asian cichlids (Teleostei: Perciformes: Cichlidae). Molecular Phylogenetics and Evolution, 30, 599-614.
- http://dx.doi.org/10.1016/S1055-7903(03)00225-2
- Sparks, J.S. (2008) Phylogeny of the cichlid subfamily Etroplinae and taxonomic revision of the Malagasy cichlid genus Paretroplus (Teleostei: Cichlidae). Bulletin of the American Museum of Natural History, 314, 1-151. http://dx.doi.org/10.1206/314.1
- Sparks, J.S. & Smith, W.L. (2004a) Phylogeny and Biogeography of cichlid fishes (Teleostei: Perciformes: Cichlidae). Cladistics, 20, 501-507.
- http://dx.doi.org/10.1111/j.1096-0031.2004.00038.x
- Sparks, J.S. & Smith, W.L. (2004b) Phylogeny and biogeography of the Malagasy and Australasian rainbowfishes (Teleostei: Melanotaenioidei): Gondwanan vicariance and evolution in freshwater. Molecular Phylogenetics and Evolution, 33, 719- 734.
- http://dx.doi.org/10.1016/j.ympev.2004.07.002
- Sparks, J.S. & Stiassny, M.L.J. (2003) Introduction to the freshwater fishes. In: Goodman, S.M. & Benstead, J.P. (Eds.), The natural history of Madagascar. University of Chicago Press, Chicago, pp. 849-863.
- Sparks, J.S. & Stiassny, M.L.J. (2008) Les poissons d'eaux douce. In: Goodman, S.M. (Ed.), Paysages Naturels et Biodiversite de Madagascar. Publications Scientifiques Museum national d'Histoire naturelle (MNHN), Paris, pp. 283-309.
- Sparks, J.S. & Stiassny, M.L.J. (2010) A new species of Ptychochromis from northeastern Madagascar (Teleostei: Cichlidae), with an updated phylogeny and revised diagnosis for the genus. Zootaxa, 2341, 33-51.
- Stamatakis, A. (2014) RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies. Bioinformatics, 30 (9), 1312-1313.
- http://dx.doi.org/10.1093/bioinformatics/btu033
- Stamatakis, A., Hoover, P., Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology, 57, 758-771.
- http://dx.doi.org/10.1080/10635150802429642
- Stiassny, M.L.J. & Sparks, J.S. (2006) Phylogeny and taxonomic revision of the endemic Malagasy genus Ptychochromis (Teleostei: Cichlidae), with the description of five new species and a diagnosis for Katria, new genus. American Museum Novitates, 3535, 1-55.
- http://dx.doi.org/10.1206/0003-0082(2006)3535[1:PATROT]2.0.CO;2
- Taylor, W.R. & Van Dyke, G.C. (1985) Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study. Cybium, 9, 107-119.
- Zelditch, M.L., Swiderski, D.L., Sheets, H.D. & Fink, W.L. (2004) Geometric Morphometrics for Biologists: A Primer. Elsevier Academic Press, San Diego, CA, 443 pp.