Published December 31, 2015
| Version v1
Journal article
Restricted
Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records
Description
Bryce, Monika, Poliseno, Angelo, Alderslade, Philip, Vargas, Sergio (2015): Digitate and capitate soft corals (Cnidaria: Octocorallia: Alcyoniidae) from Western Australia with reports on new species and new Australian geographical records. Zootaxa 3963 (2): 160-200, DOI: 10.11646/zootaxa.3963.2.2
Files
Restricted
The record is publicly accessible, but files are restricted to users with access.
Linked records
Additional details
References
- Alderslade, P. (1998) Revisionary systematics in the gorgonian family Isididae, with descriptions of numerous new taxa (Coelenterata: Octocorallia). Records of the Western Australian Museum, Supplement No. 55, 1-359.
- Bayer, F.M. (1974) A new species of Trichogorgia and records of two other octocorals new to Palau Islands. Micronesica, 10, 257-271.
- Benayahu, Y. & Schleyer, M.H. (1995) Corals of the south-west Indian Ocean II. Eleutherobia aurea spec. nov. (Cnidaria, Alcyonacea) from deep reefs on the KwaZulu-Natal Coast, South Africa. South African Association for marine biological research, Oceanographic Research Institute, Investigational Report, 68, 1-12.
- Benayahu, Y., Jeng, M.S., Perkol-Finkel, S. & Dai, C.F. (2004) Soft Corals (Octocorallia: Alcyonacea) from Southern Taiwan. II. Species Diversity and distributional patterns. Zoological Studies, 43(3), 548-560.
- Breedy, O., van Ofwegen, L. & Vargas, S. (2012) A new family of soft corals (Anthozoa, Octocorallia, Alcyonacea) from the aphotic tropical eastern Pacific waters revealed by integrative taxonomy. Systematics and Biodiversity, 10, 351-359. http://dx.doi.org/10.1080/14772000.2012.707694
- Brugler, M.R. & France, S.C. (2008) The mitochondrial genome of a deep-sea bamboo coral (Cnidaria, Anthozoa, Octocorallia, Isididae): genome structure and putative origins of replication are not conserved among octocorals. Journal of Molecular Evolution, 67, 125-136.
- http://dx.doi.org/10.1007/s00239-008-9116-2
- Bryce, C. (Ed.) (2009) Marine Biodiversity Survey of Mermaid Reef (Rowley Shoals), Scott and Seringapatam Reef. Records of the Western Australian Museum, 77, 1-255.
- Bryce, M. & Sampey, A. (2014) Kimberley Marine Biota: Soft corals and sea fans (Octocorallia). Records of the Western Australian Museum 84 (in press).
- Dautova, T.N. & Savinkin, O.S. (2009) New data on soft corals (Cnidaria: Octocorallia: Alcyonacea) from Nha Trang Bay, South China Sea. Zootaxa, 2027, 1-27.
- Darriba, D., Taboada, G.L., Doallo, R. & Posada D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9 (8), 772.
- http://dx.doi.org/10.1038/nmeth.2109
- Dayrat, B. (2005) Towards integrative taxonomy. Biological Journal of the Linnean Society, 85, 407-415. http://dx.doi.org/10.1111/j.1095-8312.2005.00503.x
- Edgar, RC. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32, 1792-1797.
- http://dx.doi.org/10.1093/nar/gkh340
- Fabricius, K. & Alderslade, P. (2001) Soft corals and sea fans - a comprehensive guide to the tropical shallow water genera of the central-west Pacific, the Indian Ocean and the Red Sea. Australian Institute of Marine Science, Townsville, 264 pp.
- Fabricius, K. (2008) A brief photo guide to the shallow-water octocorals of the Rowley Shoals, Western Australia. Report to the Department of Environment and Conservation, Government of Western Australia, 39 pp.
- Faulkner, D. & Chesher, R. (1979) Living corals. Clarkson N. Potter, Inc., New York, 311 pp.
- Imahara, Y., Iwase, F. & Namakawa, H. (2014) The octocorals of Sagami Bay. Tokyo University Press, 398 pp.
- Keesing, J.K., Irvine, T.R., Alderslade, P., Clapin, G., Fromont, J., Hosie, A.M., Huisman, J.M., Phillips, J.C., Naughton, K.M., Marsh, L.M., Slack-Smith, S.M., Thomson, D.P. & Watson, J.E (2008) Marine benthic flora and fauna of Gourdon Bay and the Dampier Peninsula in the Kimberley region of north-west Australia. Journal of the Royal Society of Western Australia, 94, 285-301.
- Kukenthal, W. (1906a) Alcyonaria. Wissenschaftliche Ergebnisse der Deutschen Tiefsee-Expedition, 13 (1), 1-111.
- Kukenthal, W. (1906b) Japanische Alcyonaceen. Abhandlungen der koniglich Bayerischen Akademie der Wissenschaften. II. KL. Suppl. Bd. 1 Abt. (Beitraege zur Naturgeschichte Ostasiens), pp. 1-86.
- Lamouroux, J.V.F. (1812) Extrait d'un memoire sur la classification des polypiers coralligenes non entierement pierreux. Nouveaux Bulletin Des Sciences par la Soci e te. Philomathique de Paris, 3, 181-188.
- Marsh, LM. (1993) Cnidaria, other than reef-building corals, of Ashmore Reef and Cartier Island. In: Berry, P.F. (Ed.) Marine Faunal Survey of Ashmore Reef and Cartier Island, North-western Australia. Records of the Western Australian Museum, 44, 1-91.
- Masini, R, Sim, C.B. & Simpson, C.J. (2009) Protecting the Kimberley. A synthesis of scientific knowledge to support conservation management in the Kimberley region of Western Australia. Department of Environment and Conservation, Western Australia, 45 pp.
- McFadden, C.S., Tullis, I.D., Hutchinson, M.B., Winner, K. & Sohm, J.A. (2004) Variation in coding (NADH dehydrogenase subunits 2, 3 and 6) and non-coding intergenic spacer regions of the mitochondrial genome in Octocorallia (Cnidaria: Anthozoa). Marine Biotechnology, 7 (4), 405-406.
- http://dx.doi.org/10.1007/s10126-005-1000-0
- McFadden, C.S., France, S.C., Sanchez, J.A. & Alderslade, P. (2006) A molecular phylogenetic analysis of the octocorallia (Cnidaria: Anthozoa) based on mitochondrial protein-coding sequences. Molecular Phylogenetics and Evolution, 41, 513-527.
- http://dx.doi.org/10.1016/j.ympev.2006.06.010
- McFadden, C.S., Benayahu, Y., Pante, E., Thoma, J.N, Nevarez, P.A. & France, S.C. (2011) Limitations of mitochondrial gene barcoding in the cnidarian sub-class Octocorallia. Molecular Ecology Resources, 11, 19-31. http://dx.doi.org/10.1111/j.1755-0998.2010.02875.x
- McFadden, C.S. & van Ofwegen, L.P. (2012) Stoloniferous octocorals (Anthozoa, Octocorallia) from South Africa, with descriptions of a new family of Alcyonacea, a new genus of Clavulariidae, and a new species of Cornularia (Cornulariidae). Invertebrate Systematics, 26, 331-356.
- http://dx.doi.org/10.1071/IS12035
- McFadden, C.S. & Ofwegen, L.P. (2013) Molecular phylogenetic evidence supports a new family of octocorals and a new genus of Alcyoniidae (Octocorallia, Alcyonacea). ZooKeys, 346, 59-83.
- http://dx.doi.org/10.3897/zookeys.346.6270
- McFadden, C.S., Brown, A.S., Brayton, C., Hunt, C.B. & Ofwegen, L.P. (2014) Application of DNA barcoding in biodiversity studies of shallow-water octocorals: molecular proxies agree with morphological estimates of richness in Palau. Coral Reefs, 33, 275-286.
- http://dx.doi.org/10.1007/s00338-013-1123-0
- Nutting, C.C. (1912) Description of the Alcyonaria collected by the U.S. Fisheries steamer "Albatross", mainly in Japanese waters, during 1906. Proceedings of the United States National Museum 43, 1-104. http://dx.doi.org/10.5479/si.00963801.43-1923.1
- Pante, E., France, S.C., Couloux, A., Cruaud, C., McFadden, C.S, Samadi, S. & Watling, L. (2012) Deep-Sea origin and in-situ diversification of Chrysogorgiid octocorals. PLOS ONE 7 (6), 1-14.
- http://dx.doi.org/10.1371/journal.pone.0038357
- Pante, E., Abdelkrim, J., Viricel, A., Gey, D., France, S., Boisselier, M.C. & Samadi, S. (2014) Use of RAD sequencing for delimiting species.
- http://dx.doi.org/10.1038/hdy.2014.105
- Putter, A. (1990) Alcyonaceen des Breslauer Museum. Zoologische Jahrbucher (Systematik), 13, 443-462.
- Ronquist, F. & Huelsenbeck, J. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
- http://dx.doi.org/10.1093/bioinformatics/btg180
- Schleyer, M.H. & Benayahu, Y. (2008) Soft coral biodiversity and distribution in East Africa: Gradients, function and significance. Proceedings of the 11th International Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008, pp. 1388-1391.
- Sanchez, J.A., McFadden, C.S., France, S.C. & Lasker, H.R. (2003) Molecular phylogenetic analyses of shallow-water Caribbean octocorals. Marine Biology, 142, 975-987.
- Shearer, T.L., van Oppen, M.J.H., Romano, S.L. & Worheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11, 2475-2487.
- http://dx.doi.org/10.1046/j.1365-294X.2002.01652.x
- Stover, B.C. & Muller, K.F. (2010) TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses. BMC Bioinformatics, 11, 7.
- http://dx.doi.org/10.1186/1471-2105-11-7
- Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
- http://dx.doi.org/10.1093/bioinformatics/btl446
- Stamatakis, A. Hoover, P. & Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML Web servers. Systematic Biology, 57, 758-771.
- http://dx.doi.org/10.1080/10635150802429642
- Thoma, J.N., Pante, E., Brugler, M.R. & France, S.C. (2009) Deep-sea octocorals and antipatharians show no evidence of seamount-scale endemism in the NW Atlantic. Marine Ecology Progress Series 397, 25-35. http://dx.doi.org/10.3354/meps08318
- Thomson, J.S. (1910) The Alcyonaria of the Cape of Good Hope and Natal. Alcyonacea. Transactions of the Royal Society of Edinburgh, XLVII, 549-589.
- Thomson, J.A. & Henderson, W.D. (1906) An account of the Alcyonarians collected by the Royal Indian Marine survey ship Investigator in the Indian Ocean. Printed by order of the trustees of the Indian Museum, 128 pp. http://dx.doi.org/10.5962/bhl.title.26574
- Thomson, J.A. & Dean, L.M.I. (1931) Alcyonacea of the Siboga Expedition with an addendum to the Gorgonacea. Siboga- Expedition Reports, 13d, 1-227.
- Utinomi, H. (1954) Some alcyoniid octocorals from Kii coast, middle Japan, with descriptions of two new species. Publications of Seto Marine Biological Laboratory, 6 (2), 147-168.
- Utinomi, H. (1957) The Alcyonarian genus Bellonella from Japan, with description of two new species. Publications of Seto Marine Biological Laboratory, 6 (2), 24-44.
- Utinomi, H. (1960) Noteworthy octocorals collected off the southwest coast of Kii Peninsula, middle Japan. 1. Stolonifera and Alcyonacea. Publications of Seto Marine Biological Laboratory, 8 (1), 1-26.
- Utinomi, H. & Harada, E. (1958) A list of bottom animals collected by a trawler "Kaiun-maru" off the southwest coast of Kii Peninsula. Publications of Seto Marine Biological Laboratory, 6 (3), 385-395.
- Vargas, S., Guzman, H.M., Breedy, O. & Worheide, G. (2014) Molecular phylogeny and DNA barcoding of tropical eastern Pacific shallow-water gorgonian octocorals. Marine Biology, 161 (5), 1027-1038
- http://dx.doi.org/10.1007/s00227-014-2396-8
- Verseveldt, J. & Bayer, F.M. (1988) Revision of the genera Bellonella, Eleutherobia, Nidalia and Nidaliopsis (Octocorallia: Alcyoniidae and Nidalliidae), with description of two new genera. Zoologische Verhandelingen Leiden, 245, 1-131.
- Will, K.P., Mishler, B.D. & Wheeler, Q.D. (2005) The perils of DNA Barcoding and the need for integrative taxonomy. Systematic Biology, 4, 844-851.
- http://dx.doi.org/10.1080/10635150500354878
- Williams, G.C. (1986) Morphology, systematics and variability of the southern African soft coral Alcyonium variabile (J. Stuart Thomson, 1921) (Octocorallia, Alcyoniidae). Annals of the South Africa Museum, 96, 241-270.
- Williams, G.C. (1992) Revision of the soft coral genus Minabea (Octocorallia: Alcyoniidae), with new taxa from the Indo-West Pacific. Proceedings of the California Academy of Sciences, 48, 1-26.
- Williams, C.G. (1992) The Alcyonacea of southern Africa. Stoloniferous octocorals and soft corals (Coelenterata, Anthozoa). Annals of the South African Museum, 100, 249-358.
- Williams, G.C. (2000) A new species of the soft coral genus Eleutherobia Putter, 1900 (Coelenterata: Alcyonacea) from the Tonga Islands. Proceedings of the California Academy of Sciences, 52, 159-169.
- Williams, G.C. (2001) First record of a bioluminescent soft coral: description of a disjunct population of Eleutherobia grayi (Thomson & Dean, 1931) from the Solomon Islands, with a review of bioluminescence in the Octocorallia. Proceedings of the California Academy of Science, 52, 209-225.
- Williams, G.C. (2003) Capitate taxa of the soft coral genus Eleutherobia (Octocorallia: Alcyoniidae) from Palau and South Africa: a new species and a new combination. Zoologische Verhandelingen Leiden, 345, 419-436.
- Williams, G.C. & Alderslade, P. (1999) Revisionary systematics of the western Pacific soft coral genus Minabea (Octocorallia: Alcyoniidae), with descriptions of a related new genus and species from the Indo-Pacific. Proceedings of the California Academy of Sciences, 51, 337-364.
- Williams, G.C. & Little, S.A (2001) A new species of the soft coral genus Eleutherobia Putter, 1900, (Octocorallia: Alcyoniidae) from South Africa. Proceedings of the California Academy of Sciences, 52, 195-208.
- Wilson, B. (2013) The biogeography of the Australian North West Shelf: Environmental change and life's response. Elsevier, 413 pp.
- Yang, Z. (1994) Maximum-likelihood phylogenetic estimation from DNA-sequences with variable rates over sites- approximate methods. Journal of Molecular Evolution, 39, 306-314.