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Published December 31, 2012 | Version v1
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Porites fontanesii, a new species of hard coral (Scleractinia, Poritidae) from the southern Red Sea, the Gulf of Tadjoura, and the Gulf of Aden, and its phylogenetic relationships within the genus

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Benzoni, Francesca, Stefani, Fabrizio (2012): Porites fontanesii, a new species of hard coral (Scleractinia, Poritidae) from the southern Red Sea, the Gulf of Tadjoura, and the Gulf of Aden, and its phylogenetic relationships within the genus. Zootaxa 3447: 56-68, DOI: 10.5281/zenodo.282163

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LSID
urn:lsid:plazi.org:pub:FFC5FFD5FFBF9B10FF9DC13DB32FFFC5
URL
http://publication.plazi.org/id/FFC5FFD5FFBF9B10FF9DC13DB32FFFC5

Has part
Taxonomic treatment: 10.5281/zenodo.6173750 (DOI)
Taxonomic treatment: http://treatment.plazi.org/id/03FC87ADFFBD9B12FF0AC4CDB001F91A (URL)
Taxonomic treatment: 10.5281/zenodo.6173752 (DOI)
Taxonomic treatment: urn:lsid:zoobank.org:act:9A01A99B-5160-4A7B-B968-CAA4CD28B0AC (LSID)
Taxonomic treatment: http://treatment.plazi.org/id/03FC87ADFFBD9B15FF0AC60FB1DCF81B (URL)
Figure: 10.5281/zenodo.282164 (DOI)
Figure: 10.5281/zenodo.282165 (DOI)
Figure: 10.5281/zenodo.282166 (DOI)
Figure: 10.5281/zenodo.282167 (DOI)
Figure: 10.5281/zenodo.282168 (DOI)
Figure: 10.5281/zenodo.282169 (DOI)
Figure: 10.5281/zenodo.282170 (DOI)
Is source of
Dataset: http://www.gbif.org/dataset/478af170-cc64-4fc1-9425-8f2cdf3f3ea5 (URL)

References

  • Benzoni, F., Arrigoni, R., Stefani, F. & Pichon, M. (2011) Phylogeny of the coral genus Plesiastrea (Cnidaria, Scleractinia). Contributions to Zoology, 80, 231-249.
  • Benzoni, F., Stefani, F., Pichon, M. & Galli P. (2010) The name game: morpho-molecular species boundaries in the genus Psammocora (Cnidaria, Scleractinia). Zoological Journal of the Linnean Society, 160, 421-456.
  • Benzoni, F., Stefani, F., Stolarski, J., Pichon, M. & Galli, P. (2007) Debating phylogenetic relationships of the scleractinian Psammocora: molecular and morphological evidences. Contributions to Zoology, 76, 33-52.
  • Bernard, H.M. (1905) The family Poritidae II. The genus Porites part I. Porites of the Indo-Pacific region. Catalog of the Madreporarian Corals in the British Museum (Natural History), 5, 1-303.
  • Bernard, H.M. (1906) The family Poritidae III. The genus Porites part II. Porites of the Atlantic and West Indies with the European fossil forms. Catalog of the Madreporarian Corals in the British Museum (Natural History), 6, 1-193.
  • Budd, A.F., Romano, S.L., Smith, N.D. & Barbeitos, M.S. (2010) Rethinking the phylogeny of Scleractinian corals: a review of morphological and molecular data. Integrative and Comparative Biology, 50, 411-427.
  • Chen C.C., Chang, C.C., Wei, N.V., Chen, C.H., Lein, Y.T., Dai, C.F. & Wallace, C. (2004) Secondary structure and phylogenetic utility of ribosomal internal spacer 2 (ITS2) in Scleractinian corals. Zoological Studies, 43, 759-771.
  • Chevalier, J.P. & Beauvais, L. (1987) Ordre des Scleractiniaires XI systematique. In: Doumenc, D. (Ed), Traite de Zoologie. Masson, Paris, 3, pp. 679-764.
  • Claereboudt, M. (2006) Reef corals and coral refs of the Gulf of Oman. The Historical Association of Oman, Muscat, 344 pp.
  • Claereboudt, M.R. (2006) Porites decasepta: a new species of scleractinian coral (Scleractinia, Poritidae) from Oman. Zootaxa, 1188, 55-62.
  • Coates, A.G. & Obando, J.A. (1996) The geological evolution of the Central American Isthmus. In: Jackson, J.B.C., Budd, A.F. & Coates, A.G. (Eds), Evolution and environment in tropical America. University of Chicago Press, Chicago, IL, pp. 21- 56.
  • Coates, A.G., Jackson, J.G.C., Collins, L.S., Cronin, T.M., Dowsett, H., Bybell, L.M., Jung, P. & Obando J.A. (1992) Closure of the Isthmus of Panama: the near-shore marine record of Costa Rica and western Panama. Geological Society of America Bulletin, 104, 814-828.
  • DeVantier, L., De Ath, G., Klaus, R., Al-Moghrabi, S., Abdulaziz, M., Reinicke, G.B. & Cheung, C. (2004) Reef-building corals and coral communities of the Socotra Archipelago, a zoogeographic 'crossroads' in the Arabian Sea. Fauna of Arabia, 20, 117-168.
  • Diekmann, O.E., Bak, R.P.M., Stam, W.T. & Olsen, J.L. (2001) Molecular genetic evidence for probable reticulate speciation in the coral genus Madracis from a Caribbean fringing reef slope. Marine Biology, 139, 221-233.
  • Drummond, A.J. & Rambaut, A. (2007) 'BEAST: Bayesian evolutionary analysis by sampling trees.' BMC Evolutionary Biology, 7, 214.
  • Drummond, A.J., Ho, S.Y.W., Phillips, M.J. & Rambaut, A. (2006) Relaxed phylogenetics and dating with confidence. PLoS Biology, 4, e88.
  • Flot, J.F. & Tillier, S. (2007) The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: the putative D-loop and a novel ORF of unknown function. Gene, 401, 80-87.
  • Flot, J.F., Magalon, H., Cruaud, C., Couloux, A. & Tillier S. (2008) Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology. Comptes Rendus Biologies, 331, 239-247.
  • Forsman, Z.H. & Birkeland, C. (2009) Porites randalli: a new coral species (Scleractinia, Poritidae) from American Samoa. Zootaxa, 2244, 51-59.
  • Forsman, Z.H., Barshis, D., Hunter, C.L. & Toonen, R.J. (2009) Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites. BMC Evolutionary Biology, 9, 45.
  • Forsman, Z.H., Martinez, J.A., Maragos, J. & Toonen, R.J. (2011) Resurrection of Porites hawaiiensis Vaughan, 1907; a Hawaiian coral obscured by small size, cryptic habitat, and confused taxonomy. Zootaxa, 2624, 67-68.
  • Forsman, Z.H., Wellington, G.M., Hunter, C.L. & Fox, G.E. (2006) Is the ITS region the solution to the 'species problem' in corals? Intragenomic variation, and alignment permutation in Porites, Siderastrea and outgroup taxa. Proceedings of the 10th International Coral Reef Symposium, 14-23.
  • Gleason, D.F. (1992). The control and adaptive significance of morphological variation in the reef coral Porites astreoides. Ph.D. thesis. University of Huston, Huston.
  • Gravier, C. (1911) Les recifs de coraux et les madreporaires de la baie de Tadjourah (Golfe d'Aden). Annales de l'Institut Oceanographique, Paris, 2, 1-99.
  • Huelsenbeck, J.P. & Ronquist, F. (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 745-755.
  • Huelsenbeck, J.P., Ronquist, F., Nielsen, R. & Bollback, J.P. (2001) Bayesian inference of phylogeny and its impact on evolutionary biology. Science, 294, 2310-2314.
  • Jameson, S.C. (1997) Morphometric analysis of the Poritidae (Anthozoa: Scleractina) off Belize. Proceedings of the 8th International Coral Reef Symposium, 1591-1596.
  • Kitahara, M.V., Cairns, S.D. & Miller, D.J. (2010a) Monophyletic origin of Caryophyllia (Scleractinia, Caryophylliidae), with descriptions of six new species. Systematics and Biodiversity, 8, 91-118.
  • Kitahara, M.V., Cairns, S.D., Stolarski, J., Blair, D. & Miller, D.J. (2010b) A comprehensive phylogenetic analysis of the Scleractinia (Cnidaria, Anthozoa) based on mitochondrial CO1 sequence data. PLoS One 5, e11490.
  • Muko, S., Kawasaki, K., Sakai, K., Takasu, F. & Shigesada, N. (2000) Morphological plasticity in the coral Porites sillimaniana and its adaptive significance. Bulletin of Marine Science, 66, 225-239.
  • Pichon, M., Benzoni, F., Chaineau, C.H. & Dutrieux, E. (2010) Field guide of the hard corals of the southern coast of Yemen. Biotope, Paris, 256 pp.
  • Posada, D. & Crandall, K.A. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
  • Shearer, T.M., van Oppen, M.J.H., Romano, S.L. & Worheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11, 2475-2487.
  • Stefani, F., Benzoni, F., Sung Yin, Y., Pichon, M., Galli, P. & Chen, C.A. (2011) Comparison of morphological and genetic analyses reveal cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia). Coral Reefs, 30, 1033-1049.
  • Swofford, D.L. (2001) PAUP* Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4b.10. Sunderland MA: Sinauer Associates.
  • Takabayashi, M., Carter, D.A., Loh, W.K.T. & Hoegh-Guldberg, O. (1998) A coral-specific primer for PCR amplification of the internal transcribed spacer region in ribosomal DNA. Molecular Ecology, 7, 925-931.
  • Turak, E., Brodie, J. & DeVantier, L. (2007) Reef-building corals and coral communities of the Yemen Red Sea. Fauna of Arabia, 23, 1-40.
  • Vaughan, T.W. & Wells, J.W. (1943) Revision of the sub-orders, families and genera of the Scleractinia. Geological Society of America Special Papers, 44, 363 pp.
  • Vaughan, T.W. (1907) Recent madreporaria of the Hawaiian Islands and Laysan. Bulletin of the United States National Museum, 59, 1-427.
  • Vaughan, T.W. (1918) Some shallow-water corals from Murray Island (Australia), Cocos-Keeling Island, and Fanning Island. Papers from the Department of Marine Biology of the Carnegie Institution of Washington, 9, 49-234.
  • Veron J.E.N. (2002) New species described in 'Corals of the World'. Australian Institute of Marine Science Monograph Series, 11, 1-206.
  • Veron, J.E.N. & Pichon, M. (1982) Scleractinia of Eastern Australia, IV: Family Poritidae. Australian Institute of Marine Science Monograph Series, 5, 1-156.
  • Veron, J.E.N. (2000) Corals of the world, Vol. 3. Australian Institute of Marine Science, Townsville, 490 pp.
  • Verrill, A.E. (1864) List of the polyps and corals sent by the Museum of Comparative Zoology to other institutions in exchange, with annotations. Bulletin of the Museum of Comparative Zoology at Harvard College, 1, 29-60.
  • Wei, N.W.V., Wallace, C.C., Dai, C.F., Pillay, K.R. & Chen, C.A. (2006) Analyses of the Ribosomal Internal Transcribed Spacers (ITS) and the 5.8S Gene Indicated that Extremely High rDNA Heterogeneity is a Unique Feature in the Scleractinian Coral Genus Acropora (Scleractinia; Acroporidae). Zoological Studies, 45, 404-418.
  • Weil, E.F. (1992) Genetic and morphological variation in Caribbean and eastern Pacific Porites (Anthozoa, Scleractinia), preliminary results. Proceedings of the 7th International Coral Reef Symposium, 643-656.
  • White, T.J., Bruns, T., Lee, S. & Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J. (Eds.), PCR Protocols. A Guide to Methods and Application. CA: Academic Press Inc., San Diego, pp. 315-322.
  • Wilcox, D., Dove, B., McDavid, D. & Greer, D. (1986-2001) UTHSCSA Image Tool for Windows. San Antonio, TX: University of Texas Health Science Centre, Avaiable at: http:// ddsdx.uthscsa.edu/dig/itdesc.html.