Published March 13, 2019
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Hidden in plain sight: reassessment of the pig-footed bandicoot, Chaeropus ecaudatus (Peramelemorphia, Chaeropodidae), with a description of a new species from central australia, and use of the fossil record to trace its past distribution
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Travouillon, Kenny J., Simões, Bruno F., Miguez, Roberto Portela, Brace, Selina, Brewer, Philippa, Stemmer, David, Price, Gilbert J., Cramb, Jonathan, Louys, Julien (2019): Hidden in plain sight: reassessment of the pig-footed bandicoot, Chaeropus ecaudatus (Peramelemorphia, Chaeropodidae), with a description of a new species from central australia, and use of the fossil record to trace its past distribution. Zootaxa 4566 (1): 1-69, DOI: 10.11646/zootaxa.4566.1.1
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- https://www.checklistbank.org/dataset/28360
- LSID
- urn:lsid:zoobank.org:pub:4D8BAEF5-AED6-4973-897C-96C5945E3710
- LSID
- urn:lsid:plazi.org:pub:FFD7536DD948FFA24C16B30FA5162557
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- http://publication.plazi.org/id/FFD7536DD948FFA24C16B30FA5162557
References
- Aplin, K.P. & Archer, M. (1987) Recent advances in marsupial systematics with a new syncretic classification. In Archer, M. (Ed), Possums and Opossums, Studies in Evolution. Surrey Beatty and Sons, Sydney, Australia, pp. xv-lxi.
- Archer, M. (1974) New information about the Quaternary distribution of the thylacine (Marsupialia, Thylacinidae) in Australia. Journal of the Royal Society of Western Australia, 57, 43-50.
- Clarkson, C., Jacobs, Z., Marwick, B., Fullagar, R., Wallis, L., Smith, M., Roberts, R.G., Hayes, E., Lowe, K., Carah, X., Florin, S.A., McNeil, J., Cox, D., Arnold, L.J., Hua, Q., Huntley, J., Brand, H.E.A., Manne, T., Fairbairn, A., Shulmeister, J., Lyle, L., Salinas, M., Page, M., Connell, K., Park, G., Norman, K., Murphy, T. & Pardoe, C. (2017) Human occupation of northern Australia by 65,000 years ago. Nature, 547, 306-310. https://doi.org/10.1038/nature22968
- Bolger, A.M., Lohse, M. & Usadel, B. (2014) Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120. https://doi.org/10.1093/bioinformatics/btu170
- Bouckaert, R., Heled, J., Kuhnert, D., Vaughan, T., Wu, C-H., Xie, D., Suchard, MA., Rambaut, A., & Drummond, A. J. (2014). BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. PLoS Computational Biology, 10 (4), e1003537. https://doi.org/10.1371/journal.pcbi.1003537
- Burbidge, A.A., Johnson, K.A., Fuller, P.J. & Southgate, R.I. (1988) Aboriginal knowledge of the mammals of the central deserts of Australia. Australian Wildlife Research, 15, 9-39. https://doi.org/10.1071/WR9880009
- Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540-552. https://doi.org/10.1093/oxfordjournals.molbev.a026334
- Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nature Methods, 9, 772. https://doi.org/10.1038/nmeth.2109
- Dixon, J. (1988) Notes on the diet of three mammals presumed to be extinct: the Pig-footed Bandicoot, the Lesser Bilby and the Desert Rat Kangaroo. Fictorian Naturalist, 105, 208-211.
- Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792-1797. https://doi.org/10.1093/nar/gkh340
- Fisher, C.T. (1988) An unpublished drawing of the Pig-footed bandicoot by John Gould and H.C. Richter. With Comments on Museum Specimens. Australian Zoologist, 24, 205-209. https://doi.org/10.7882/AZ.1988.003
- Fusco, D.A., McDowell, M.C. & Prideaux, G.J. (2016) Late-Holocene mammal fauna from southern Australia reveals rapid species declines post-European settlement: Implications for conservation biology. The Holocene, 26, 699-708. https://doi.org/10.1177/0959683615618261
- Gill, T. (1872) Arrangement of the families of mammals with analytical tables. Smithsonian Miscellaneous Collections, 11, 1- 98.
- Gould, J. (1845) Descriptions of five new species of mammals. Proceedings of the Zoological Society of London, 13, 77-79.
- Gould, J. (1846) Descriptions of six new species of birds. Proceedings of the Zoological Society of London, 14, 67-71.
- Gordon, G. & Hulbert, A.J. (1989) Peramelidae. In: Walton, D.W. (Ed), Fauna of Australia. Australian Government Publishing Service, Canberra, Australia, pp. 603-624.
- Gray, J.E. (1842) Description of two new species of Mammalia discovered in Australia by Captain George Grey, Governor of South Australia. Annual Magazine of Natural History, 9, 39-42. https://doi.org/10.1080/03745484209442952
- Groves, C. (2005) Order Peramelemorphia. In: Wilson, D.E. & Reader, D.M. (Eds), Mammal Species of the World: A Taxonomic and Geographic Reference (3rd ed). Johns Hopkins University Press, Baltimore, pp. 38-42.
- Ho, S.Y.W. & Phillips, M.J. (2009) Accounting for Calibration Uncertainty in Phylogenetic Estimation of Evolutionary Divergence Times. Systematics Biology, 58, 367-380. https://doi.org/10.1093/sysbio/syp035
- Hocknull, S.A. (2005) Late Pleistocene-Holocene occurrence of Chaeropus (Peramelidae) and Macrotis (Thylacomyidae) from Queensland. Memoirs of the Queensland Museum, 51, 38.
- Hocknull, S.A., Zhao, J.X., Feng, Y.X. & Webb, G.E. (2007) Responses of Quaternary rainforest vertebrates to climate change in Australia. Earth and Planetary Science Letters, 264, 317-331. https://doi.org/10.1016/j.epsl.2007.10.004
- Hume, I.D. (1982) Digestive Physiology and Nutrition of Marsupials. Cambridge University Press, Cambridge, 256 pp.
- Iredale, T. & Troughton, E.G. (1934) A check-list of the mammals recorded from Australia. Memoirs of the Australian Museum, 6, i-xii, 1-122. https://doi.org/10.3853/j.0067-1967.6.1934.516
- Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Research, 30, 3059-3066. https://doi.org/10.1093/nar/gkf436
- Kirsch, J.A.W. (1968) Prodromus of the comparative serology of Marsupialia. Nature, 217, 418-420. https://doi.org/10.1038/217418a0
- Krefft, G. (1864) Cataloque of Mammalia in the collection of the Australian Museum. Australian Museum Catalogue No. 2. Trustees of the Australian Museum, Sydney. 2 +134 +2 pp.
- Krefft, G. (1865) Two papers on the Fertebrata of the lower Murray and Darling, and on the snakes of Sydney. Reading and Wellbank, Sydney.
- Krefft, G. (1866) On the vertebrated animals of the Lower Murray and Darling, their habits, economy, and geographical distribution. Transactions of the Philosophical Society of New South Wales, 1866, 1-33.
- Krefft, G. (1870) Letter to the Editor (re Chaeropodus Ecaudatus). Australian Town and Country Journal, II (42), 17, col. 1, 22 October.
- Langmead, B. & Salzberg, S. (2012) Fast gapped-read alignment with Bowtie 2. Nature Methods, 9, 357-359. https://doi.org/10.1038/nmeth.1923
- Loytynoja, A. & Goldman, N. (2005) An algorithm for progressive multiple alignment of sequences with insertions. Proceeding of the National Academy of Science, 102, 10557-10562. https://doi.org/10.1073/pnas.0409137102
- Lydekker, R. (1894) A Handbook to the Marsupialia and Monotremata. Allan & Co., London.
- Mahoney, J.A. & Ride, W.D.L. (1988) Peramelidae. In: Walton, D.W. (Ed), Zoological Catalogue of Australia Fol. 5 Mammalia. Australian Government Publishing Service, Canberra, pp. 36-42.
- Martin, H.A. (2006) Cenozoic climatic change and the development of the arid vegetation in Australia. Journal of Arid Environments, 66, 533-563. https://doi.org/10.1016/j.jaridenv.2006.01.009
- Meyer, M. & Kircher, M. (2010) Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing. Cold Spring Harbor Protocols. https://doi.org/10.1101/pdb.prot5448
- Mitchell, T.L. (1838) Three expeditions into the interior of eastern Australia, with descriptions of the recently explored region of Australia Felix, and of the present colony of New South Wales. London: T. & W. Boone. 2 volumes.
- Montanari S., Louys J. & Price, G.J. (2013). Pliocene paleoenvironments of southeastern Queensland, Australia inferred from stable Isotopes of marsupial tooth enamel. PLoS ONE, 8, e66221. https://doi.org/10.1371/journal.pone.0066221
- Muirhead, J. & Godthelp, H. (1996) Fossil bandicoots of Chillagoe (northeastern Queensland) and the first known specimens of the pig-footed bandicoot Chaeropus Ogilby, 1838 from Queensland. Australian Mammalogy, 19, 73-76.
- Myers, T. (2001) Prediction of marsupial body mass. Australian Journal of Zoology, 49, 99-118. https://doi.org/10.1071/ZO01009
- Ogilby, W. (1838) On a new species of marsupial animal by Major Mitchell on the banks of the Murray River in New South Wales. Proceedings of the Zoological Society of London, 6, 25-27.
- Parnaby, H.E., Ingleby, S. & Divljan, A. (2017) Type Specimens of Non-fossil Mammals in the Australian Museum, Sydney. Records of the Australian Museum, 69 (5), 277-420. https://doi.org/10.3853/j.2201-4349.69.2017.1653
- Parsons, F.G. (1903) On the anatomy of the pig-footed bandicoot (Chaeropus castanotis). Journal of the Linnean Society of London, Zoology, 29, 64-80. https://doi.org/10.1111/j.1096-3642.1903.tb00426.x
- Pattengale, N.D., Alipour, M., Bininda-Emonds, O.R.P., Moret, B.M.E. & Stamatakis, A. (2010) How many bootstrap replicates are necessary? Journal of Computational Biology, 17, 337-354. https://doi.org/10.1089/cmb.2009.0179
- Price, G.J. (2012) Plio-Pleistocene climate and faunal change in central eastern Australia. Episodes, 35, 160-165.
- Price, G.J., Cramb, J., Louys, J. & Feng, Y.-X. (2017) Palaeontology of northeastern Australian caves. In: Moore, K. & White, S. (Eds), Proceedings of the 17th International Congress of Speleology, July 22-28, Sydney, NSW Australia. Australian Speleological Federation Incorporated, Sydney, pp. 25-28.
- Price, G.J., Feng, Y.-X., Zhao, J.-X. & Webb, G.E. (2013) Direct U-Th dating of vertebrate fossils with minimum sampling destruction and application to museum specimens. Quaternary Geochronology, 18, 1-8. https://doi.org/10.1016/j.quageo.2013.07.003
- Price, G.J., Zhao, J.-X., Feng, Y.-X. & Hocknull, S.A. (2009) New records of Plio-Pleistocene koalas from Australia: palaeoecological and taxonomic implications. Records of the Australian Museum, 61, 39-48. https://doi.org/10.3853/j.0067-1975.61.2009.1518
- Ronquist, F., Teslenko, H., Mark, V.D.P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Systematic Biology, 61, 539-542. https://doi.org/10.1093/sysbio/sys029
- Spencer, B. (1896) Mammalia. In: Spencer, B. (Ed), Report on the Work of the Horn Scientific Expedition to Central Australia. Part 2. Zoology. Melville, Mullen & Slate, Melbourne, pp. 1-52.
- Stamatakis, A. (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312-1313. https://doi.org/10.1093/bioinformatics/btu033
- Sturt, C. (1848) Narrative of an Expedition into Central Australia during the years 1844, 5 and 6. London: T. W. Boone.
- Swofford, D. (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Fersion 4 (Updated to 10 Beta). Sinauer Associates, Sunderland, Massachussets.
- Thomas, O. (1888) Catalogue of the Marsupialia and Monotremata in the Collection of the British Museum (Natural History). British Museum, London.
- Travouillon, K.J., Archer, M., Hand, S.J. & Muirhead, J. (2015) Sexually dimorphic bandicoots (Marsupialia, Peramelemorphia) from the Oligo-Miocene of Australia, first cranial ontogeny for fossil bandicoots and new species descriptions. Journal of Mammalian Evolution, 22, 141-167. https://doi.org/10.1007/s10914-014-9271-8
- Travouillon, K.J. (2016) Oldest fossil remains of the enigmatic Pig-footed Bandicoot show rapid herbivorous evolution. Royal Society Open Science, 3, 160089. https://doi.org/10.1098/rsos.160089
- Travouillon, K.J., Louys, J., Price, G.J., Archer, M., Hand, S.J. & Muirhead, J. (2017) A review of the Pliocene bandicoots of Australia, and descriptions of new genus and species. Journal of Fertebrate Paleontology, 37 (5), e1360894. https://doi.org/10.1080/02724634.2017.1360894
- Throughton, E.L.G. (1932) Australian furred animals, their past, present and future. Australian Zoologist, 7, 173-193.
- Van Dyck, S. & Strahan, R. (2008) The Mammals of Australia. Sydney: Reed New Holland.
- Wakefield, N.A. (1966) Mammals of the Blandowski Expedition to north-western Victoria, 1856-1857. Proceedings of the Royal Society of Fictoria, 79, 371-391.
- Warburton, N.M. & Travouillon, K.J. (2016) The biology and taxonomy of the Peramelemorphia: a review of current knowledge and future research directions. Australian Journal of Zoology, 64, 151-181. https://doi.org/10.1071/ZO16003
- Waterhouse, G.R. (1838) Catalogue of the Mammalia Preserved in the Museum of the Zoological Society of London. R. and J. E. Taylor, London.
- Waterhouse, G.R. (1846) A Natural History of the Mammalia. Folume 1. Containing the Order Marsupiata, or Pouched Animals. Bailliere, London, 553 pp. + 22pls.
- Westerman, M., Springer, M.S., Dixon, J., & Krajewski, C. (1999) Molecular relationships of the extinct pig-footed bandicoot Chaeropus ecaudatus (Marsupialia: Perameloidea) using 12S rRNA sequences. Journal of Mammalian Evolution, 6, 271- 288. https://doi.org/10.1023/A:1020565724799
- Westerman, M., Kear, B.P., Aplin, K., Meredith, R.W., Emerling, C. & Springer, M.S. (2012) Phylogenetic relationships of living and recently extinct bandicoots based on nuclear and mitochondrial DNA sequences. Molecular Phylogeny and Evolution, 62, 97-108. https://doi.org/10.1016/j.ympev.2011.09.009
- Wood Jones, F. (1923) The mammals of South Australia. Part II: The bandicoots and the herbivorous marsupials. Government Printer, Adelaide.
- Wright, W., Sanson, G.D. & McArthur, C. (1991) The diet of the extinct bandicoot Chaeropus ecaudatus. In: Vickers-Rich, P., Monaghan, J.M., Baird, R.F. & Rich, T.H. (Eds), Fertebrate palaeontology of Australasia. Pioneer Design Studio, Melbourne, Australia, pp. 229-245.