Published January 6, 2017
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Contribution to the identification of Dianthus rupicola (Caryophyllaceae) subspecies using morphological and molecular approaches
- 1. Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Italy;
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Domina, Gianniantonio, Scibetta, Silvia, Scafidi, Filippo, Giovino, Antonio (2017): Contribution to the identification of Dianthus rupicola (Caryophyllaceae) subspecies using morphological and molecular approaches. Phytotaxa 291 (1): 17-32, DOI: 10.11646/phytotaxa.291.1.2, URL: http://dx.doi.org/10.11646/phytotaxa.291.1.2
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References
- Arca, M., Hinsinger, D.D., Cruaud, C., Tillier Bousquet, J. & Frascaria-Lacoste, N. (2012) Deciduous Trees and the Application of Universal DNA Barcodes: A Case Study on the Circumpolar Fraxinus. PLoS ONE 7: e34089. https://doi.org/10.1371/journal.pone.0034089
- Arcangeli, G. (1882) Compendio della flora italiana. Loescher,Torino, 928 pp.
- Bartolo, G., Brullo, S., Majorana, G. & Pavone, P. (1977) Numeri cromosomici per la flora italiana: 315-328. Informatore Botanico Italiano 9: 71-87.
- Bivona Bernardi, A. (1806) Sicularum Plantarum centuria prima. P. Barravecchia, Panormi, 84 pp.
- Bolos Capdevila, O. de & Vigo Bonada, J. (1974) Notes sobre taxonomia i nomenclatura de plantes, I. Butlleti de la Institucio Catalana d'Historia Natural, Seccio de Botanica 38(1): 61-89.
- Brullo, S. & Minissale, P. (2002) Il gruppo di Dianthus rupicola Biv. nel Mediterranea centrale. Informatore Botanico Italiano 33(2) (2001): 537-542.
- Castro, M. & Rossello, J.A. (2004) Chromosome numbers in plant taxa endemic to the Balearic Islands. Botanical Journal of the Linnean Society 148: 219-228. https://doi.org/10.1111/j.1095-8339.2005.00397.x
- CBOL Plant Working Group (2009) A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106: 12794-12797. https://doi.org/10.1073/pnas.0905845106
- Cosson, E. (1891) Illustrationes Florae Atlanticae. Typ. Reipublica, Paris, 159 pp. + 98 tabb.
- Domina, G., Greuter, W., Mazzola, P. & Raimondo, F.M. (2014) Names of Italian vascular plants published by Michele Lojacono Pojero. Flora Mediterranea 24: 215-232. https://doi.org/10.7320/FlMedit24.215
- Domina, G., Giusso del Galdo, G., Gargano, D., Labra, M., Peccenini, S., Peruzzi, L. & Raimondo, F.M. (2012) The Italian Loci Classici census. Taxon 61(1): 1351-1353.
- Dong, W., Liu, J., Yu, J., Wang, L. & Zhou, S. (2012) Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding. PLOS ONE 7(4): e35071. https://doi.org/10.1371/journal.pone.0035071
- Doyle, J.J. & Doyle, J.L. (1987) A rapid isolation procedure for small amounts of leaf tissue. Phytochemical bulletin 19: 11-15.
- Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32(5): 1792-1797. https://doi.org/10.1093/nar/gkh340
- Fazekas, A.J., Steeves, R. & Newmaster, S.G. (2010) Improving sequencing quality from PCR products containing long mononucleotide repeats. BioTechniques 48: 277-285. https://doi.org/10.2144/000113369
- Fazekas, A.J., Kuzmina, M.L., Newmaster, S.G. & Hollingsworth, P.M. (2012) DNA Barcoding Methods for Land Plants. In: Lopez, I. & Erickson, D.L. (Eds.) DNA Barcodes. Methods and Protocols. Humana Press, New York, pp. 223-252. https://doi.org/10.1007/978-1-61779-591-6_11
- Gargano, D., Pellegrino, G. & Bernardo, L. (2015) Genetic and fitness consequences of interpopulation mating in Dianthus guliae Janka: conservation implications for severely depleted and isolated plant populations. Conservation Genetics 16: 1127-1138. https://doi.org/10.1007/s10592-015-0727-z
- Gere, J., Kowiyou, Y., Daru, B., Mankga, L., Maurin, O. & Bank, M. van der (2013) Incorporating trnH-psbA to the core DNA barcodes improves significantly species discrimination within southern African Combretaceae. ZooKeys 365: 129-147. https://doi.org/10.3897/zookeys.365.5728
- Giovino, A., Marino, P., Domina, G., Scialabba, A., Schicchi, R., Diliberto, G., Rizza, C. & Scibetta S. (2014) Evaluation of the DNA barcoding approach to develop a reference dataset for the threatened flora of Sicily. Plant Biosystems 150(4): 631-640.
- Giovino, A., Domina, G., Bazan, G., Campisi, P. & Scibetta, S. (2015) Taxonomy and conservation of Pancratium maritimum (Amaryllidaceae) and relatives in the Central Mediterranean. Acta Botanica Gallica 162: 289-299. https://doi.org/10.1080/12538078.2015.1089416
- Gussone, G. (1843) Florae Siculae Synopsis, vol. 1. Tramater, Napoli, 582 pp.
- Hammer, O. (2016) PAST 3.06. Available from: http: //folk.uio.no/ohammer/past (accessed 2 August 2016)
- Hammer, O., Harper, D.A.T. & Ryan, P.D. (2001) PAST: Paleontological Statistics software package for education and data analysis. Paleontol Electronica 4: 1-9.
- Hebert, P.D.N., Cywinska, A., Ball, S.L. & DeWaard, J.R. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B: Biological Sciences 270: 313-321. https://doi.org/10.1098/rspb.2002.2218
- Hollingsworth, P.M. (2011) Refining the DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 108: 19451-19452. https://doi.org/10.1073/pnas.1116812108
- Lantieri, A., Salmeri, C., Guglielmo, A. & Pavone, P. (2012) Seed germination in the Sicilian subspecies of Dianthus rupicola Biv. (Caryophyllaceae). Plant Biosystems 146(4): 906-909. https://doi.org/10.1080/11263504.2012.667843
- Llorens, L. & Gradaille, J.L. (1991) Dianthus rupicola Biv. subsp. bocchoriana Llorens et Gradaille, nuevo endemismo de la isla de Mallorca. Candollea 46(2): 383-389.
- Lojacono-Pojero, M. (1888) Flora Sicula, vol. 1(1). Virzi, Palermo, 234 pp.
- McNeill, J. (2014) Holotype specimens and type citations: General issues. Taxon 63(5): 1112-1113. https://doi.org/10.12705/635.7
- McNeill, J., Barrie, F.R., Buck, W.R., Demoulin V., Greuter, W., Hawksworth, D.L., Herenden, P.S., Knapp, S., Marhold, K., Prado, J., Prud'Homme Van Reine, W.F., Smith, J.F., Wiersema, J.H. & Turland, N.J. (Eds.) (2012) International Code of Nomenclature for algae, fungi and plants (Melbourne Code) adopted by the Eigtheen International Botanical Congress Melbourne, Australia, July 2011. Regnum Vegetabile 154: 1-240.
- Nevill, P., Wallace, M.J., Miller, J. & Krauss, S.L. (2013) DNA barcoding for conservation, seed banking and ecological restoration of Acacia in the Midwest of Western Australia. Molecular Ecology Resources 13(6): 1033-1042.
- Oberlander, K.C., Roets, F. & Dreyer, L.L. (2012) Chloroplast phylogeography of threatened aquatic Oxalis (Oxalidaceae): significant inter-population structure, divergent haplotypes and conservation implications. Conservation Genetics 13: 789-799. https://doi.org/10.1007/s10592-012-0329-y
- Osuji, G.A., Onyeagu, S.I. & Ekezie, D.D. (2013) Comparison of jackknife and resubstitution methods in the estimation of error rates in discriminant analysis. International Journal of Mathematics and Statistics Studies 1(3): 29-37.
- Pang, X.H., Liu, C., Shi, L.C., Liu, R., Liang, D., Li, H., Cherny, S.S. & Chen, S. (2012) Utility of the trnH-psbA intergenic spacer region and its combinations as plant DNA barcodes: a meta-analysis. PLoS ONE 7: e48833. https://doi.org/10.1371/journal.pone.0048833
- Peruzzi, L. & Cesca, G. (2003) Numeri cromosomici per la Flora Italiana 1421-1433. Informatore Botanico Italiano 35(1): 85-91.
- Peruzzi, L., Domina, G., Bartolucci, F., Galasso, G., Peccenini, S., Raimondo, F.M., Albano, A., Alessandrini, A., Banfi, E., Barberis, G., Bernardo, L., Bovio, M., Brullo, S., Brundu, G., Brunu, A., Camarda, I., Carta, L., Conti, F., Croce, A., Iamonico, D., Iberite, M., Iiriti, G., Longo, D., Marsili, S., Medagli, P., Pistarino, A., Salmeri, C., Santangelo, A., Scassellati, E., Selvi, F., Soldano, A., Stinca, A., Villani, M., Wagensommer, R.P. & Passalacqua, N.G. (2015) An inventory of the names of vascular plants endemic to Italy, their loci classici and types. Phytotaxa 196: 1-217. https://doi.org/10.11646/phytotaxa.196.1.1
- Seberg, O. & Petersen, G. (2009) A unified classification system for eukaryotic transposable elements should reflect their phylogeny. Nature Reviews Genetics 10: 276. https://doi.org/10.1038/nrg2165-c3
- Raimondo, F.M. (2010) Dianthus cyathophorus subsp. minae. In: Raimondo, F.M., Domina, G. & Spadaro, V. (Eds.) Checklist of the vascular flora of Sicily. Quaderni di Botanica Ambientale e Applicata 21: 189.
- Ratnasingham, S. & Hebert, P.D.N. (2007) BOLD: the barcode of life data system (www.barcodinglife.org). Molecular Ecology Notes 7: 355-364. https://doi.org/10.1111/j.1471-8286.2007.01678.x
- Shaw, J., Lickey, E.B., Schilling, E.E. & Small, R.L. (2007) Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: The tortoise and the hare III. American Journal of Botany 94: 275-288. https://doi.org/10.3732/ajb.94.3.275
- Signorini, M.A., Foggi, B. & Mori, B. (2001) Mediterranean chromosome number reports - 11. Flora Mediterranea 11: 473-478.
- Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30(12): 2725-2729. https://doi.org/10.1093/molbev/mst197
- Tenore, M. (1811) Flora Napolitana, vol. 1. Stamperia Reale, Napoli, 324 pp. + 50 tabb.
- Thiers, B. (2016) Index Herbariorum, A global directory of public herbaria and associated staff. New York Botanical Garden's Virtual Herbarium. Available from: http://sweetgum.nybg.org/ih/ (accessed 15 September 2016)
- Williams, F.N.(1893) A Monograph of the Genus Dianthus Linn. The Journal of the Linnean Society. Botany 29: 346-469.
- Woods J. (1850) The Tourist's Flora: A Descriptive Catalogue of the Flowering Plants and Ferns of the British Islands, France, Germany, Switzerland, Italy and the Italian Islands. Reeve, Benham & Reeve, London, 504 pp. https://doi.org/10.5962/bhl.title.49483
- Yang, Z.Y. & Zhang, L. (2010) Screening potential DNA barcode regions in Amomum (Zingiberaceae). Acta Botanica Yunnanica 32: 393-400.