Published December 31, 2019 | Version v1
Journal article Open

Growth Rate Modulation Enables Coexistence in a Competitive Exclusion Scenario Between Microbial Eukaryotes

Description

Ribeiro, Giulia M., Prado, Paulo Inácio, Coutinho, Renato Mendes, Rillo, Marina Costa, Pereira Junior, Samuel, Porfirio-Sousa, Alfredo L., Lahr, Daniel J. G. (2019): Growth Rate Modulation Enables Coexistence in a Competitive Exclusion Scenario Between Microbial Eukaryotes. Acta Protozoologica 58 (4): 217-233, DOI: 10.4467/16890027AP.19.019.12021, URL: http://dx.doi.org/10.4467/16890027ap.19.019.12021

Files

source.pdf

Files (6.3 MB)

Name Size Download all
md5:b763de8b61f9fa5138951e52325b6b8a
6.3 MB Preview Download

Linked records

Additional details

Identifiers

LSID
urn:lsid:plazi.org:pub:B763FF8BFFF9FA51FF951E52325BFF8A

References

  • Altermatt F., Bieger A., Carrara F., Rinaldo A., and Holyoak M. (2011) Effects of connectivity and recurrent local disturbances on community structure and population density in experimental metacommunities. PLoS One 6: e19525
  • Altermatt F., Fronhofer E. A., Garnier A., Giometto A., Hammes F., Klecka J., Legrand D., Maechler E., Massie T. M., Pennekamp F. et al. (2015) Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution. Methods Ecol. Evol. 6: 218-231
  • Amarasekare P. (2000) The geometry of coexistence. Biol. J. Linn. Soc. 71: 1-31
  • Barraclough T. G. (2015) How do species interactions affect evolutionary dynamics across whole communities? Annu. Rev. Ecol. Evol. Syst. 46: 25-48
  • Bastolla U., Lassig M., Manrubia S. C., and Valleriani A. (2005). Biodiversity in model ecosystems, I: coexistence conditions for competing species. J. Theor. Biol. 235: 521-530
  • Beyers R. J. and Odum H. T. (2012) Ecological microcosms. SSBM
  • Cadotte M. W. (2007) Competition-colonization trade-offs and disturbance effects at multiple scales. Ecology 88: 823-829
  • Cadotte M. W., Mai D. V., Jantz S., Collins M. D., Keele M., and Drake J. A. (2006) On testing the competition-colonization trade-off in a multispecies assemblage. Am. Nat. 168: 704-709
  • Carrara F., Altermatt F., Rodriguez-Iturbe I., and Rinaldo A. (2012) Dendritic connectivity controls biodiversity patterns in experimental metacommunities. PNAS 109: 5761-5766
  • Castilho L., Moraes A., Augusto E., and Butler M. (2008) Animal cell technology: from biopharmaceuticals to gene therapy. Garland Science
  • Chesson P. (2000) Mechanisms of maintenance of species diversity. Annu. Rev. Ecol. Syst. 31: 343-366
  • Couradeau E., Benzerara K., Moreira D., Gerard E., Kazmierczak J., Tavera R., and Loopes-Garcia P. (2011) Prokaryotic and eukaryotic community structure in field and cultured microbi- alites from the alkaline lake Alchichica (Mexico). PLoS One 6: e28767
  • Craig MacLean R., Dickson A., and Bell G. (2005) Resource competition and adaptive radiation in a microbial microcosm. Ecol. Lett. 8: 38-46
  • DeLong J. P., Okie J. G., Moses M. E., Sibly R. M., and Brown J. H. (2010) Shifts in metabolic scaling, production, and effi- ciency across major evolutionary transitions of life. PNAS 107: 12941-12945
  • Duval D., Demangel C., Miossec S., and Geahel I. (1992) Role of metabolic waste products in the control of cell proliferation and antibody production by mouse hybridoma cells. Hybridoma 11: 311-322
  • Fenchel T. (1974) Intrinsic rate of natural increase: the relationship with body size. Oecologia 14: 317-326
  • Fox J. W. and Smith D. C. (1997) Variable outcomes of protistrotifer competition in laboratory microcosms. Oikos, 489-495
  • Fronhofer E. A., Klecka J., Melian C. J., and Altermatt F. (2015) Condition-dependent movement and dispersal in experimental metacommunities. Ecol. Lett. 18: 954-963
  • Gause G. F. (1934) The struggle for existence. Soil Science 41: 159
  • Gerisch G., Fromm H., Huesgen A., and Wick U. (1975) Control of cell-contact sites by cyclic amp pulses in differentiating Dictyostelium cells. Nature 255: 547
  • Giometto A., Altermatt F., Carrara F., Maritan A., and Rinaldo A. (2013) Scaling body size fluctuations. PNAS 110: 4646-4650
  • Giometto A., Rinaldo A., Carrara F., and Altermatt F. (2014) Emerging predictable features of replicated biological invasion fronts. PNAS 111: 297-301
  • Griffiths J. I., Warren P. H., and Childs D. Z. (2015) Multiple environmental changes interact to modify species dynamics and invasion rates. Oikos 124: 458-468
  • Haddad N. M., Holyoak M., Mata T. M., Davies K. F., Melbourne B. A., and Preston K. (2008) Species traits predict the effects of disturbance and productivity on diversity. Ecol. Lett. 11: 348-356
  • Hart S. P., Schreiber S. J., and Levine J. M. (2016) How variation between individuals affects species coexistence. Ecol. Lett. 19: 825-838
  • Hornik K., Leisch F., and Zeileis A. (2003) Jags: A program for analysis of Bayesian graphical models using Gibbs sampling. DSC, 2, 1-1
  • Hostetler J. A. and Chandler R. B. (2015) Improved state-space models for inference about spatial and temporal variation in abundance from count data. Ecology 96: 1713-1723
  • Huang W., de Araujo Campos P. R., de Oliveira V. M., and Ferreira F. F. (2016) A resource-based game theoretical approach for the paradox of the plankton. PeerJ 4: e2329
  • Huete-Ortega M., Cermeno P., Calvo-Diaz A., and Maranon E. (2012) Isometric size-scaling of metabolic rate and the size abundance distribution of phytoplankton. Proc. R. Soc. B 279: 1815-1823
  • Huston M. (1979) A general hypothesis of species diversity. Am. Nat. 113: 81-101
  • Jeremy W., Peter J., et al. (2001) Effects of intra- and interspecific interactions on species responses to environmental change. J. Anim. Ecol. 70: 80-90
  • Jiang L. and Morin P. J. (2007) Temperature fluctuation facilitates coexistence of competing species in experimental microbial communities. J. Anim. Ecol. 76: 660-668
  • Kanarek A. R. and Webb C. T. (2010) Allee effects, adaptive evolution, and invasion success. Evol. Appl. 3: 122-135
  • Kayser H. (1979) Growth interactions between marine dinoflagel- lates in multi-species culture experiments. Mar. Biol. 52: 357- 369
  • Kempes C. P., Dutkiewicz S., and Follows M. J. (2012) Growth, metabolic partitioning, and the size of microorganisms. PNAS 109: 495-500
  • Kokkoris G. D., Jansen V.A., Loreau M., and Troumbis A. Y. (2002) Variability in interaction strength and implications for biodiversity. J. Anim. Ecol. 71: 362-371
  • Konijn T. M., Van De Meene J., Bonner J. T., and Barkley D. S. (1967) The acrasin activity of adenosine-3', 5'-cyclic phosphate. PNAS 58: 1152-1154
  • Kosakyan A., Gomaa F., Lara E., and Lahr D. J. (2016) Current and future perspectives on the systematics, taxonomy and nomenclature of testate amoebae. Eur. J. Protistol. 55: 105-117
  • Loomis W. F. (2014) Cell signaling during development of dictyostelium. Dev. Biol. 391: 1-16
  • Lopez-Garcia P. and Moreira D. (2008) Tracking microbial biodiversity through molecular and genomic ecology. Res. Microbiol. 159: 67-73
  • Lotka A. J. (1920) Analytical note on certain rhythmic relations in organic systems. PNAS 6: 410-415
  • Lymperopoulou D. S., Kormas K. A., and Karagouni A. D. (2012) Variability of prokaryotic community structure in a drinking water reservoir (Marathonas, Greece). Microb. Environ. 27: 1-8
  • Mechler E. and Altermatt F. (2012) Interaction of species traits and environmental disturbance predicts invasion success of aquatic microorganisms. PLoS One 7: e45400
  • Meisterfeld R. (2000a) Order Arcellinida Kent, 1880. In: An Illustrated Guide to the Protozoa (Eds. J. J. Lee, G. F. Leedale, P. Bradbury). 2nd edition. Society of Protozoologists, Allen Press, Lawrence, Kansas, 827-860
  • Menden-Deuer S. and Rowlett J. (2014) Many ways to stay in the game: individual variability maintains high biodiversity in planktonic microorganisms. J. R. Soc. Interface 11: 20140031
  • Michod R. E. (2007) Evolution of individuality during the transition from unicellular to multicellular life. PNAS 104 (suppl 1): 8613-8618
  • Muller J. P., Hauzy C., and Hulot F. D. (2012) Ingredients for protist coexistence: competition, endosymbiosis and a pinch of biochemical interactions. J. Anim. Ecol. 81: 222-232
  • Nakagawa S., Johnson P. C., and Schielzeth H. (2017) The coefficient of determination r2 and intra-class correlation coefficient from generalized linear mixed-effects models revisited and ex- panded. J. R. Soc. Interface 14: 20170213
  • Nealson K. and Hastings J. W. (1979) Bacterial bioluminescence: its control and ecological significance. Microbiol. Rev. 43: 496
  • Passarge J., Hol S., Escher M., and Huisman J. (2006) Competition for nutrients and light: stable coexistence, alternative stable states, or competitive exclusion? Ecol. Monogr. 76: 57-72
  • Petchey O. L., McPhearson P. T., Casey T. M., and Morin P. J. (1999) Environmental warming alters food-web structure and ecosystem function. Nature 402: 69
  • Pianka E. R. (2011) Evolutionary ecology. Eric R. Pianka
  • Rosindell J., Hubbell S. P., and Etienne R. S. (2011) The unified neutral theory of biodiversity and biogeography at age ten. Trends Ecol. Evol. 26: 340-348.
  • Saleem M., Fetzer I., Harms H., and Chatzinotas A. (2013) Diversity of protists and bacteria determines predation performance and stability. ISME J. 7: 1912
  • Schoener T. W. (1976) Alternatives to Lotka-Volterra competition: models of intermediate complexity. Theor. Popul. Biol. 10: 309-333
  • Stoffel M. A., Nakagawa S., and Schielzeth H. (2017) rptr: Repeat- ability estimation and variance decomposition by generalized linear mixed-effects models. Methods Ecol. Evol. 8: 1639-1644
  • Su Y.-S. and Yajima M. (2015) R2jags: Using R to Run 'JAGS '. R package version 0.5-7
  • Svanback R. and Bolnick D. I. (2007) Intraspecific competition drives increased resource use diversity within a natural population. Proc. R. Soc. B 274: 839-844
  • Verhulst P. (1845) Recherches mathmatiques sur la loi d'accroissement de la population. Nouv. Mem. Acad. R. Sci. Bruxelles 18: 14-54
  • Violle C., Pu Z., and Jiang L. (2010) Experimental demonstration of the importance of competition under disturbance. PNAS 107: 12925-12929
  • Violle C., Nemergut D. R., Pu Z., and Jiang L. (2011) Phylogenetic limiting similarity and competitive exclusion. Ecol. Lett 14: 782-787
  • Volterra V. (1926) Fluctuations in the abundance of a species considered mathematically. Nature 119: 12
  • Waters C. M. and Bassler B. L. (2005) Quorum sensing: cell-tocell communication in bacteria. Annu. Rev. Cell Dev. Biol. 21: 319-346
  • Weisse T. and Stadler P. (2006) Effect of ph on growth, cell volume, and production of freshwater ciliates, and implications for their distribution. Limnol. Oceanogr. 51: 1708-1715