Published July 14, 2022 | Version v1
Journal article Restricted

Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation

Description

Renner, Matthew A. M., Barrett, Russell L., Clarke, Steve, Clugston, James A. R., Wilson, Peter H. Weston Trevor C. (2022): Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation. Australian Systematic Botany 35 (3): 225-277, DOI: 10.1071/SB21030, URL: http://dx.doi.org/10.1071/sb21030

Files

Restricted

The record is publicly accessible, but files are restricted to users with access.

Linked records

Additional details

References

  • Barrett RL, Clugston JAR, Cook LG, Crisp MD, Jobson PC, Lepschi BJ, Renner MAM, Weston PH (2021) Understanding diversity and systematic in Australian Fabaceae tribe Mirbelieae. Diversity 13(8), 391. doi:10.3390/d13080391
  • Binks RM, Wilkins CF, Markey AS, Lyons MN, Byrne M (2020) Genomic data and morphological re-assessment reveals synonymy and hybridisation among Seringia taxa (Lasiopetaleae, Malvaceae) in remote north-western Australia. Taxon 69, 307-320. doi:10.1002/tax.12233
  • Bryant D, Moulton V (2004) Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21, 255-265. doi:10.1093/molbev/msh018
  • Buchmann R, Hazelhurst S (2014) Genesis Manual. (University of the Witwatersrand: Johannesburg, South Africa) Available at http:// www.bioinf.wits.ac.za/software/genesis/Genesis.pdf
  • Coates D, Byrne M, Moritz C (2018) Genetic diversity and conservation units: dealing with the species-population continuum in the age of genomics. Frontiers in Ecology and Evolution 6, 165. doi:10.3389/ fevo.2018.00165
  • Corrick MG (1996). Pultenaea. In 'Flora of Victoria Vol. 3, Dicotyledons Winteraceae to Myrtaceae'. (Eds NG Walsh, TJ Entwisle) pp. 765-793. (Inkata Press: Melbourne, Vic., Australia)
  • de Kok RPJ, West JG (2002) A revision of Pultenaea (Fabaceae) 1. Species with ovaries glabrous and/or with tufted hairs. Australian Systematic Botany 15, 81-133. doi:10.1071/SB00035
  • de Kok RPJ, West JG (2003) A revision of Pultenaea (Fabaceae) 2. Eastern Australian species with velutinous ovaries and incurved leaves. Australian Systematic Botany 16, 229-273. doi:10.1071/ SB01019
  • de Kok RPJ, West JG (2004) A revision of Pultenaea (Fabaceae) 3. The eastern species with recurved leaves. Australian Systematic Botany 17, 273-326. doi:10.1071/SB02028
  • de Queiroz K (1998) The general lineage concept of species, species criteria, and the process of speciation. In 'Forms: Species and Speciation'. (Eds DJ Howard, SH Berlocher) pp. 57-75. (Oxford University Press: New York, NY, USA)
  • de Queiroz K (2007) Species concepts and species delimitation. Systematic Biology 56, 879-886. doi:10.1080/10635150701701083
  • Department of Environment and Conservation (2006) The Vegetation of the Western Blue Mountains including the Capertee, Coxs, Jenolan & Gurnang Areas. Volume 1: Technical Report (Final V1.1). (Hawkesbury-Nepean Catchment Management Authority, DEC: Sydney, NSW, Australia) Available at https://www.environment. nsw.gov.au/resources/nature/vegofwbluemtsvol1tech.pdf
  • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulations study. Molecular Ecology 14, 2611-2620. doi:10.1111/j.1365-294X.2005. 02553.x
  • Goldbery R (1972) Geology of the western Blue Mountains. Geological Survey of New South Wales Bulletin 20, 1-172.
  • Goldbery R, Holland WN (1973) Stratigraphy and sedimentation of redbed facies in Narrabeen Group of Sydney Basin Australia. American Association of Petroleum Geologists Bulletin 57, 1314-1334.
  • Gruber B, Unmack PJ, Berry OF, Georges A (2018) dartR: an R package to facilitate analysis of SNP data generated from reduced representation genome sequencing. Molecular Ecology Resources 18, 691-699. doi:10.1111/1755-0998.12745
  • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximul-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59, 307-321. doi:10.1093/sysbio/syq010
  • Hager T, Benson D (2010) The eucalypts of the Greater Blue Mountains World Heritage Area: distribution, classification and habitats of the species of Eucalyptus, Angophora and Corymbia (family Myrtaceae) recorded in its eight conservation reserves. Cunninghamia 11, 425-444.
  • Harden GJ (2002) Fabaceae [family description]. In 'Flora of New South Wales. Vol. 2', 2nd edn. (Ed. GJ Harden) p. 363. (New South Wales University Press: Sydney, NSW, Australia)
  • Herbert C (1997) Sequence stratigraphic analysis of Early and Middle Triassic alluvial and estuarine facies in the Sydney Basin, Australia. Australian Journal of Earth Sciences 44, 125-143. doi:10.1080/ 08120099708728299
  • Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35, 518-522. doi:10.1093/molbev/msx281
  • Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23, 254-267. doi:10.1093/molbev/msj030
  • IUCN (2012) 'IUCN Red List Categories and Criteria: Version 3.1', 2nd edn. (IUCN: Gland, Switzerland; and Cambridge, UK)
  • Johnson LA, Cairns-Heath H (2010) Decryptic cryptic species: morphological and molecular evidence for recognizing Navarretia linearifolia as distinct from N. sinistra (Polemoniaceae). Systematic Botany 35, 618-628. doi:10.1600/036364410792495791
  • Jombart T (2008) adegenet: an R package for the multivariate analysis of genetic markers. Bioinformatics 24, 1403-1405. doi:10.1093/ bioinformatics/btn129
  • Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14, 587-589. doi:10.1038/nmeth.4285
  • Killan A, Wenzl P, Huttner E, Carling J, Xia L, Blois H, Caig V, HellerUszynska K, Jaccoud D, Hopper C, Aschenbrenner-Kilian M, Evers M, Peng K, Cayla C, Hok P, Uszynski G (2012) Diversity Arrays technology: a generic genome profiling technology on open platforms. In 'Data production and analysis in population genomics: methods and protocols'. (Eds F Pompanon, A Bonin) pp 67-89. (Humana Press: New York, NY, USA)
  • Lischer HEL, Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28, 298-299. doi:10.1093/bioinformatics/btr642
  • Martyn J (2018) 'Rocks and trees: a photographic journey through the rich and varied geology, scenery and flora of the Sydney region.' (STEP Inc.: Sydney, NSW, Australia)
  • Maslin BR (2001) Introduction to Acacia. Flora of Australia 11A, 3-13.
  • Mayne SJ, Nicholas E, Bigg-Wither AL, Rasidi JS, Raine MJ (1974) 'Geology of the Sydney Basin: a review. Bulletin 149.' (Department of Minerals and Energy: Canberra, ACT, Australia)
  • Melville J, Haines ML, Boysen K, Hodkinson L, Kilian A, Smith Date KL, Potvin DA, Parris KM (2017) Identifying hybridization and admixture using SNPs: application of the DArTseq platform in phylogeographic research on vertebrates. Royal Society Open Science 4, 161061. doi:10.1098/rsos.161061
  • Millar MA, Byrne M (2013) Cryptic divergent lineages of Pultenaea pauciflora M.B.Scott (Fabaceae: Mirbelieae) exhibit different evolutionary history. Biological Journal of the Linnean Society. Linnean Society of London 108, 871-881. doi:10.1111/bij.12002
  • Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution 32, 268-274. doi:10.1093/molbev/msu300
  • Orthia LA, Crist MD, Cook LG, de Kok RPJ (2005a) Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae). Australian Systematic Botany 18, 133-147. doi:10.1071/ SB04028
  • Orthia LA, Cook LG, Crisp MD (2005b) Generic delimitation and phylogenetic uncertainty: an example from a group that has undergone an explosive radiation. Australian Systematic Botany 18, 41-47. doi:10.1071/SB04016
  • Pritchard JK, Stephens M, Rosenberg NA, Donnelly P (2000) Association mapping in structured populations. American Journal of Human Genetics 67, 170-181. doi:10.1086/302959
  • Reader FM (1905) Contributions to the Flora of Victoria. No. 14. Victorian Naturalist 22(3), 51.
  • Rutherford S, Rossetto M, Bragg JG, McPherson H, Benson D, Bonser SP, Wilson PG (2018) Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species. Heredity 121, 126-141. doi:10.1038/s41437-018-0073-2
  • Sansaloni CP, Petroli CD, Carling J, Hudson CJ, Steane DA, Myburg AA, Grattapaglia D, Vaillancourt RE, Kilian A (2010) A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus. Plant Methods 6, 16. doi:10.1186/1746- 4811-6-16
  • Wang J (2017) The computer program structure for assigning individuals to populations: easy to use but easier to misuse. Molecular Ecology Resources 17(5), 981-990. doi:10.1111/1755-0998.12650
  • Weston PH (1991) Pultenaea. In 'Flora of New South Wales, Vol. 2'. (Ed. GJ Harden) pp 481-497. (New South Wales University Press: Sydney, NSW, Australia)
  • Wiley EO (1978) The evolutionary species concept reconsidered. Systematic Biology 27, 17-26.