Published March 3, 2016
| Version v1
Journal article
Restricted
Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions
Description
Powers, T.O., Bernard, E.C., Harris, T., Higgins, R., Olson, M., Olson, S., Lodema, M., Matczyszyn, J., Mullin, P., Sutton, L., Powers, K.S. (2016): Species discovery and diversity in Lobocriconema (Criconematidae: Nematoda) and related plant-parasitic nematodes from North American ecoregions. Zootaxa 4085 (3), DOI: 10.11646/zootaxa.4085.3.1
Files
Linked records
Additional details
References
- Andrassy, I. (1965) Verzeichnis und Bestimmungsschlussel der Arten der Nematoden-Gattungen Criconemoides Taylor, 1936 und Mesocriconema n. gen. Opuscula Zoologica Instituti Zoosystematici Universitatis Budapestensis, 5, 153-171.
- Avise, J.C. (2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, MA, 447 pp.
- Birky, C.W. Jr. & Barraclough, T.G. (2009) Asexual speciation. In: Schon, I., Martens, K. & van Dijk, P. (Eds.), Lost sex: The evolutionary biology of parthenogenesis. Springer, Dordrecht, The Netherlands, pp. 201-216.
- Cherry, T., Szalanski, A.L., Todd, T.C. & Powers, T.O. (1997) The internal transcribed spacer region of Belonolaimus (Nemata: Belonolaimidae). Journal of Nematology, 29, 23-29.
- Clary, D.O. & Wolstenholme, D.R. (1985) The mitochondrial DNA molecule of Drosophila yakuba: nucleotide sequence, gene organization and genetic code. Journal of Molecular Evolution, 22, 252-271. http://dx.doi.org/10.1007/BF02099755
- Clayton, L., Attig, J.W. & Mickelson, D.M. (2001) Effects of late Pleistocene permafrost on the landscape of Wisconsin, USA. Boreas, 30 (3), 173-188. http://dx.doi.org/10.1111/j.1502-3885.2001.tb01221.x
- Clement, M., Posada, D. & Crandall, K.A. (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660. http://dx.doi.org/10.1046/j.1365-294x.2000.01020.x
- Cordero, M.A., Robbins, R.T. & Szalanski, A.L. (2012) Taxonomic and molecular identification of Bakernema, Criconema, Hemicriconemoides, Ogma, and Xenocriconemella species (Nematoda: Criconematidae). Journal of Nematology, 44, 427- 446.
- De Grisse, A. & Loof, P.A.A. (1965) Revision of the genus Criconemoides (Nematoda). Mededelingen van de Landbouwhogeschool en de Opzoekingsstations van de Staat te Gent, 30, 577-603.
- De Guiran, G. (1963) Quatre especes nouvelles du genre Criconemoides Taylor (Nematoda - Criconematidae). Revue de Pathologie Vegetale et d'Entomologie Agricole de France, 42, 1-11.
- Edgar, R.C. (2004) MUSCLE: A multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics, 5, 113. http://dx.doi.org/10.1186/1471-2105-5-113
- Friedman, J.H. (1989) Regularized discriminant analysis. Journal of the American Statisical Association, 84, 165-175. http://dx.doi.org/10.1080/01621459.1989.10478752
- Geraert, E. (2010) The Criconematidae of the World. Identification of the Family Criconematidae (Nematoda). Academia Press, Gent, Belgium, 615 pp.
- Guindon, S. & Gascuel, O. (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 52, 696-704. http://dx.doi.org/10.1080/10635150390235520
- Hansen, H.P. (1939) Postglacial vegetation of the driftless area of Wisconsin. American Midland Naturalist, 21, 752-762.
- Hastie, T., Tibshirani, R. & Friedman, J.H. (2001) The elements of statistical learning: Data mining, inference, and prediction. Springer-Verlag, New York. 763 pp.
- Hewitt, G. (2000) The genetic legacy of the Quaternary ice ages. Nature, 405 (6789), 907-913. http://dx.doi.org/10.1038/35016000
- Hoffmann, J.K. (1974) Morphological variation in species of Bakernema, Criconema, and Criconemoides (Criconematidae: Nematoda). Iowa State Journal of Research, 49, 137-153.
- Hofmanner, B. & Menzel, R. (1914) Neue Arten freilebender Nematoden aus der Schweiz. Zoologischer Anzeiger, 44, 80-91.
- Huelsenbeck, J.P. & Ronquist, F. (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755. http://dx.doi.org/10.1093/bioinformatics/17.8.754
- Huson, D.H. (1998) SplitsTree: a program for analyzing and visualizing evolutionary data. Bioinformatics, 14, 68-73. http://dx.doi.org/10.1093/bioinformatics/14.1.68
- Huson, D.H. & Bryant, D. (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254-267. http://dx.doi.org/10.1093/molbev/msj030
- Jackson, S.T., Webb, R.S., Anderson, K.H., Overpeck, J.T., Webb III, T., Williams, J.W. & Hansen, B.C. (2000) Vegetation and environment in eastern North America during the last glacial maximum. Quaternary Science Reviews, 19, 489-508. http://dx.doi.org/10.1016/S0277-3791(99)00093-1
- Jenkins, W. (1964). A rapid centrifugal-flotation technique for separating nematodes from soil. Plant Disease Reporter, 48, 692.
- Kitamura, K., & Kawano, S. (2001) Regional differentiation in genetic components for the American beech, Fagus grandifolia Ehrh., in relation to geological history and mode of reproduction. Journal of Plant Research, 114, 353-368. http://dx.doi.org/10.1007/PL00013997
- Knobloch, N. & Bird, G.W. (1978) Criconematinae habitats and Lobocriconema thornei n. sp. (Criconematidae: Nematoda). Journal of Nematology, 10, 245-249.
- Lim, G.S., Balke, M. & Meier, R. (2012) Determining species boundaries in a world full of rarity: singletons, species delimitation methods. Systematic Biology, 61, 165-169. http://dx.doi.org/10.1093/sysbio/syr030
- Loof , P.A.A. & De Grisse, A. (1989) Taxonomic and nomenclatorial observations on the genus Criconemella De Grisse & Loof, 1965 sensu Luc & Raski, 1981. Mededelingen Faculteit Landbouwwetenschappen Rijksuniversiteit Gent, 54, 53-74.
- Masters, B.C., Fan, V. & Ross, H.A. (2011) Species delimitation - a geneious plugin for the exploration of species boundaries. Molecular Ecology Resources, 11, 154-157. http://dx.doi.org/10.1111/j.1755-0998.2010.02896.x
- Neher, D.A., Peck, S.L., Rawlings, J.O. & Campbell, C.L. (1995) Measures of nematode community structure and sources of variability among and within fields. Plant and Soil, 170, 167-181. http://dx.doi.org/10.1007/BF02183065
- O'Bannon, J.H. (1977) Worldwide dissemination of Radopholus similis and its importance in crop production. Journal of Nematology, 9, 16-25.
- Olson, D.M., Dinerstein, E., Wikramanayake, E.D., Burgess, N.D., Powell, G.V.N., Underwood, E.C., D'Amico, J.A., Itoua, I., Strand, H.E., Morrison, J.C., Loucks, C.J., Allnutt, T.F., Ricketts, T.H., Kura, Y., Lamoreux, J.F., Wettengel, W.W., Hedao, P. & Kassem, K.R. (2004) Terrestrial ecoregions of the world: A new map of life on earth. BioScience, 51, 933-938. http://dx.doi.org/10.1641/0006-3568(2001)051[0933:TEOTWA]2.0.CO;2
- Posada, D. (2008) ModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25, 1253-1256. http://dx.doi.org/10.1093/molbev/msn083
- Powers, T., Harris, T., Higgins, R., Mullin, P., Sutton, L. & Powers, K. (2011) MOTUs, morphology and biodiversity estimation: A case study using nematodes of the suborder Criconematina and a conserved 18S DNA barcode. Journal of Nematology, 43, 35-48.
- Powers, T.O., Harris, T., Higgins, R., Sutton, L. & Powers, K.S. (2010) Morphological and molecular characterization of Discocriconemella inarata, an endemic nematode from North American native tallgrass prairies. Journal of Nematology, 42, 35-45.
- Powers, T.O., Bernard, E.C., Harris, T., Higgins, R., Olson, M., Lodema, M., Mullin, P., Sutton, L. & Powers, K.S. (2014) COI haplotype groups in Mesocriconema (Nematoda: Criconematidae) and their morphospecies associations. Zootaxa, 3827 (2), 101-146. http://dx.doi.org/10.11646/zootaxa.3827.2.1
- Provan, J. & Bennett, K.D. (2008) Phylogeographic insights into cryptic glacial refugia. Trends in Ecology & Evolution, 23, 564-571. http://dx.doi.org/10.1016/j.tree.2008.06.010
- Raski, D.J. & Golden, A.M. (1966) Studies on the genus Criconemoides Taylor, 1936 with descriptions of eleven new species and Bakernema variabile n. sp. (Criconematidae: Nematoda). Nematologica, 11(1965), 501-565.
- Raski , D.J.& Luc, M. (1985) A reappraisal of the genus Criconema Hofmanner & Menzel, 1914 (Nematoda: Criconematidae). Revue de Nematologie, 7, 323-334.
- Rodrigo, A., Bertels, F., Heled, J., Noder, R., Shearman, H. & Tsai, P. (2008) The perils of plenty: what are we going to do with all these genes? Philosophical Transactions of the Royal Society B, 363, 3893-3902. http://dx.doi.org/10.1098/rstb.2008.0173
- Rosenberg, N.A. (2007) Statistical tests for taxonomic distinctiveness from observations of monophyly. Evolution, 61, 317- 323. http://dx.doi.org/10.1111/j.1558-5646.2007.00023.x
- Ross, H.A., Murugan, S. & Li, W.L.S. (2008) Testing the reliability of genetic methods of species identification via simulation. Systematic Biology, 57, 216-230. http://dx.doi.org/10.1080/10635150802032990
- Saeki, I., Dick, C.W., Barnes, B.V. & Murakami, N. (2011) Comparative phylogeography of red maple (Acer rubrum L.) and silver maple (Acer saccharinum L.): impacts of habitat specialization, hybridization and glacial history. Journal of Biogeography, 38, 992-1005. http://dx.doi.org/10.1111/j.1365-2699.2010.02462.x
- Siddiqi, M.R. (1980) Taxonomy of the plant nematode superfamily Hemicycliophoroidea, with a proposal for Criconematina, new suborder. Revue de Nematologie, 3, 179-199.
- Siddiqi, M.R. (1986) Tylenchida, parasites of plants and insects. Commonwealth Institute of Parasitology, St. Albans, UK. 645 pp.
- Soltis, D.E., Morris, A.B., McLachlan, J.S., Manos, P.S. & Soltis, P.S. (2006) Comparative phylogeography of unglaciated eastern North America. Molecular Ecology, 15, 4261-4293. http://dx.doi.org/10.1111/j.1365-294X.2006.03061.x
- Southern, R. (1914) Clare Island Survey. Part 54. Nemathelmia, Kinorhyncha, and Chaetognatha. Proceedings of the Royal Irish Academy, 31, 1-80.
- Steiner, G., Taylor, A.L. & Cobb, G.S. (1951) Cyst-forming plant parasitic nematodes and their spread in commerce. Proceedings of the Helminthological Society of Washington, 18, 13-18.
- Tamura, K., Stecher, G., Peterson, D., Filipski A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30, 2725-2729. http://dx.doi.org/10.1093/molbev/mst197
- Taylor, A.L. (1936) The genera and species of the Criconematinae, a sub-family of the Anguillulinidae (Nematoda). Transactions of the American Microscopical Society, 55, 391-421. http://dx.doi.org/10.2307/3222522
- Team, R.C. (2015) R: A language and environment for statistical computing [Internet]. Vienna, Austria: R Foundation for Statistical Computing, 2013. Avaiable from: http://www. r-project.org (Accessed 1 Mar. 2016)
- Van den Berg, E. (1984) New Lobocriconema species from South Africa (Nematoda: Criconematidae). Phytophylactica, 16, 93-100.
- Van den Berg, E., Tiedt, L.R., Inserra, R.N., Stanley, J.D., Vovlas, N., Rius, J.E.P, Castillo, P. & Subbotin, S.A. (2014) Morphological and molecular characterisation of some Hemicriconemoides species (Nematoda: Criconematidae) together with a phylogeny of the genus. Nematology, 16, 519-553. http://dx.doi.org/10.1163/15685411-00002786
- Venables, W.N. & Ripley, B.D. (2002) Modern applied statistics with S Springer-Verlag. New York. http://dx.doi.org/10.1007/978-0-387-21706-2
- Viglierchio, D.R. & Schmitt, R.V. (1983) On the methodology of nematode extraction from field samples: Comparison of methods for soil extraction. Journal of Nematology, 15, 450-454.
- Widmer, A. & Lexer, C. (2001) Glacial refugia: sanctuaries for allelic richness, but not for gene diversity. Trends in Ecology & Evolution, 16, 267-269. http://dx.doi.org/10.1016/S0169-5347(01)02163-2
- Weihs, C., Ligges, U., Luebke, K. & Raabe, N. (2005) klaR analyzing German business cycles. In Data analysis and decision support. Springer Berlin Heidelberg. pp. 335-343.
- Wiens, J.J. (2012) Perspective: why biogeography matters: historical biogeography vs. phylogeography and community phylogenetics for inferring ecological and evolutionary processes. Frontiers of Biogeography, 4, 128-135.