Published September 4, 2017
| Version v1
Dataset
Open
Separate-sex GWAS for reproductive fitness in Drosophila melanogaster (Sussex LHM sample)
Description
Code, data, logs, and graphs for GWAS on seperate-sex reproductive fitness in Drosophila melanogaster, Sussex LHM population sample.
The shell script, code_drive_basic_gwas.sh, downloads input data files from the internet, drives Plink to select LD-independent SNPs, and then perform a genome-wide association test against female and male fitness, separately. Plink is also used to assign functions and gene names to SNPs. Bash/Unix code is used for formatting/compatibility adjustments, and also to add NCBI-dbSNP IDs to results. The shell script starts an R script that generates basic diagnostic graphs.
See https://f1000research.com/articles/5-2644/v3 and http://www.sussex.ac.uk/lifesci/morrowlab/
Files
lhm_hc_2017.Female.gwas_res.txt
Files
(294.8 MB)
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