JSIM Software License
Copyright (C) 1999-2013 University of Washington
Developed by the National Simulation Resource
Department of Bioengineering, Box 355061
University of Washington, Seattle, WA 98195-5061.
Dr. J. B. Bassingthwaighte, Director
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
* Neither the name of the University of Washington nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
ADDITIONAL CONDITIONS
Certain third party code is integrated in this software. Use of this software is conditioned upon complying with the license agreements for those third party codes listed in Table 1.
Table 1
External code |
License Name |
License url |
Distribution Format |
Radau |
|
source |
|
Dopri5 |
|
http://www.unige.ch/~hairer/prog/licence.txt |
source |
CVODE solver |
SUNDIALS License |
source |
|
Toms731 solver |
ACM Software Copyright and License Agreement |
http://www.acm.org/pubs/copyright_policy/softwareCRnotice.html |
source |
NelderMead optimizer |
|
source |
For your convenience, certain third party codes are distributed along with this software. Use of this software is conditioned upon complying with the license agreements for those third party codes listed in Table 2.
Table 2
External code |
License name |
License url |
Distribution Format |
Java |
Sun
Microsystems, inc. |
binary |
|
CUP parser generator |
CUP Parser Generator Copyright Notice, License, and Disclaimer |
binary |
|
JLex lexical analyzer generator |
Jlex copyright notice, license and disclaimer |
http://www.cs.princeton.edu/~appel/modern/java/JLex/#LICENSE |
binary |
Scientific Graphics Toolkit |
U.S.
Department of Commerce (DOC) |
binary |
|
Xerces2 Java Parser |
Apache license, version 2.0 |
binary |
|
libsbml SBML Library |
|
binary |
|
JAMA Java Matrix package |
|
binary |