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Published October 11, 2023 | Version 1.0.0
Dataset Open

Human Microbiome Compendium dataset

  • 1. University of Chicago
  • 2. University of Minnesota
  • 3. University of Colorado School of Medicine

Description

The Human Microbiome Compendium is an ongoing project to build a large collection of human microbiome sequencing data processed with a uniform pipeline. Currently, the compendium contains 16S rRNA amplicon sequencing data for human gut microbiome samples retrieved from the Sequence Read Archive. Our website at microbiomap.org has more information about the project and links to related resources. This data is freely available under a CC-BY license; if you use it in your work, please cite our preprint, "Integration of 168,000 samples reveals global patterns of the human gut microbiome" (doi: 10.1101/2023.10.11.560955).

Version history

1.0.0: Added README.md file to the repository, and added a link to the preprint and title/author metadata for the Zenodo entry

0.2.1: "sample_metadata.tsv" was missing (Note: This was accidentally tagged "0.2.0" in the version history.)

0.2.0: Replacing "country" column in sample_metadata.tsv with an "iso" column using the country code rather than name.

0.1.0: Prepping for public release

Files

Files (54.8 MB)

Name Size Download all
md5:bf779bcc8ec301b378913aae28d9d4d6
18.8 kB Download
md5:636bb19868c91f8f009af0f9ca553091
23.4 MB Download
md5:11426c16e445e3b0ac104a9d41338b85
31.4 MB Download

Additional details

Related works

Is documented by
Preprint: 10.1101/2023.10.11.560955 (DOI)