Human Microbiome Compendium dataset
Creators
- 1. University of Chicago
- 2. University of Minnesota
- 3. University of Colorado School of Medicine
Description
The Human Microbiome Compendium is an ongoing project to build a large collection of human microbiome sequencing data processed with a uniform pipeline. Currently, the compendium contains 16S rRNA amplicon sequencing data for human gut microbiome samples retrieved from the Sequence Read Archive. Our website at microbiomap.org has more information about the project and links to related resources. This data is freely available under a CC-BY license; if you use it in your work, please cite our preprint, "Integration of 168,000 samples reveals global patterns of the human gut microbiome" (doi: 10.1101/2023.10.11.560955).
Version history
1.0.0: Added README.md file to the repository, and added a link to the preprint and title/author metadata for the Zenodo entry
0.2.1: "sample_metadata.tsv" was missing (Note: This was accidentally tagged "0.2.0" in the version history.)
0.2.0: Replacing "country" column in sample_metadata.tsv with an "iso" column using the country code rather than name.
0.1.0: Prepping for public release
Files
Files
(54.8 MB)
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Additional details
Related works
- Is documented by
- Preprint: 10.1101/2023.10.11.560955 (DOI)