molecular_twin_pilot_source_code.zip
__MACOSX
._molecular_twin_pilot_source_code
212 Bytes
molecular_twin_pilot_source_code
._Architecture and hyperparameters for each classification model.docx
532 Bytes
._LICENSE
212 Bytes
._MTPilot_Genomic_data_processing.py
212 Bytes
._MTPilot_clinical_data_processing.py
212 Bytes
._MTPilot_differential_expression_correlations_multiomic_merge.py
212 Bytes
._MTPilot_generate_study_analysis_plots.py
212 Bytes
._MTPilot_merge_multiomic_dataset.py
212 Bytes
._MTPilot_multiomic_model_training.py
212 Bytes
._MTPilot_parsimonious_curves_compare_with_TCGA.py
212 Bytes
._MTPilot_pathology_processing.py
212 Bytes
._MTPilot_protein_tumor_normal_differential_expression.py
212 Bytes
._MTPilot_recursive_feature_elimination_parsimonious_plots.py
212 Bytes
._MTPilot_rna_fusions_processing.py
212 Bytes
._MTPilot_validation_train_on_MTPilot_predict_on_TCGA.py
212 Bytes
._README.md
212 Bytes
._custom_docker_images
212 Bytes
._modeling
212 Bytes
._molecular_twin_pilot_source_code.zip
212 Bytes
._requirements.txt
212 Bytes
._rnaseq
212 Bytes
custom_docker_images
._genomics
212 Bytes
._rna_fusion
212 Bytes
._rna_seq
212 Bytes
._tximport
212 Bytes
genomics
._Dockerfile
212 Bytes
._push.sh
212 Bytes
rna_fusion
._Dockerfile
212 Bytes
._push.sh
212 Bytes
rna_seq
._Dockerfile
212 Bytes
._push.sh
212 Bytes
tximport
._Dockerfile
212 Bytes
._build_push.sh
212 Bytes
modeling
.___init__.py
212 Bytes
.___pycache__
212 Bytes
._batch_effects.py
212 Bytes
._feature_importance.py
212 Bytes
._learning_curves.sh
212 Bytes
._learning_curves_by_analyte.R
212 Bytes
._plot_pca_batch.R
212 Bytes
._run_batch_effects.sh
212 Bytes
._tests
212 Bytes
__pycache__
.___init__.cpython-37.pyc
212 Bytes
.___init__.cpython-38.pyc
212 Bytes
.___init__.cpython-39.pyc
212 Bytes
._feature_importance.cpython-37.pyc
212 Bytes
._feature_importance.cpython-38.pyc
212 Bytes
._feature_importance.cpython-39.pyc
212 Bytes
tests
.___init__.py
212 Bytes
._test_batch_effects.py
212 Bytes
._test_feature_importance.py
212 Bytes
rnaseq
._.ipynb_checkpoints
212 Bytes
.___init__.py
212 Bytes
._create_tx_to_gene_workflow.py
212 Bytes
._differential_expression
212 Bytes
._quantify_kallisto.sh
212 Bytes
._rnaseq_workflow.py
212 Bytes
._rnaseq_workflow.yaml
212 Bytes
._tsv_to_csv.py
212 Bytes
._tx_to_genes.R
212 Bytes
.ipynb_checkpoints
._create_tx_to_gene_workflow-checkpoint.py
212 Bytes
._rnaseq_workflow-checkpoint.py
212 Bytes
differential_expression
._differential_expression.R
212 Bytes
._run_differential_expression.sh
212 Bytes
._select_genes.R
212 Bytes
molecular_twin_pilot_source_code
Architecture and hyperparameters for each classification model.docx
15.4 kB
LICENSE
11.3 kB
MTPilot_Genomic_data_processing.py
9.0 kB
MTPilot_clinical_data_processing.py
22.1 kB
MTPilot_differential_expression_correlations_multiomic_merge.py
60.7 kB
MTPilot_generate_study_analysis_plots.py
51.7 kB
MTPilot_merge_multiomic_dataset.py
35.0 kB
MTPilot_multiomic_model_training.py
20.3 kB
MTPilot_parsimonious_curves_compare_with_TCGA.py
25.7 kB
MTPilot_pathology_processing.py
18.2 kB
MTPilot_protein_tumor_normal_differential_expression.py
40.5 kB
MTPilot_recursive_feature_elimination_parsimonious_plots.py
24.0 kB
MTPilot_rna_fusions_processing.py
5.9 kB
MTPilot_validation_train_on_MTPilot_predict_on_TCGA.py
27.1 kB
README.md
2.6 kB
custom_docker_images
genomics
Dockerfile
103 Bytes
push.sh
285 Bytes
rna_fusion
Dockerfile
445 Bytes
push.sh
287 Bytes
rna_seq
Dockerfile
490 Bytes
push.sh
306 Bytes
tximport
Dockerfile
814 Bytes
build_push.sh
336 Bytes
modeling
__init__.py
0 Bytes
__pycache__
__init__.cpython-37.pyc
181 Bytes
__init__.cpython-38.pyc
185 Bytes
__init__.cpython-39.pyc
185 Bytes
feature_importance.cpython-37.pyc
4.3 kB
feature_importance.cpython-38.pyc
4.3 kB
feature_importance.cpython-39.pyc
4.3 kB
batch_effects.py
7.7 kB
feature_importance.py
3.7 kB
learning_curves.sh
1.2 kB
learning_curves_by_analyte.R
3.3 kB
plot_pca_batch.R
1.4 kB
run_batch_effects.sh
3.2 kB
tests
__init__.py
0 Bytes
test_batch_effects.py
1.6 kB
test_feature_importance.py
1.5 kB
molecular_twin_pilot_source_code.zip
156 Bytes
requirements.txt
302 Bytes
rnaseq
.ipynb_checkpoints
create_tx_to_gene_workflow-checkpoint.py
3.9 kB
rnaseq_workflow-checkpoint.py
3.5 kB
__init__.py
0 Bytes
create_tx_to_gene_workflow.py
3.9 kB
differential_expression
differential_expression.R
9.5 kB
run_differential_expression.sh
457 Bytes
select_genes.R
2.0 kB
quantify_kallisto.sh
458 Bytes
rnaseq_workflow.py
3.5 kB
rnaseq_workflow.yaml
22.9 kB
tsv_to_csv.py
1.1 kB
tx_to_genes.R
2.4 kB