XPP model
This model was converted from XPP ode format to SBML using sbmlutils-0.1.5a6
.
# Kuznetsova and Deth, JCN, 2007 # 10-cell model: 8 E cells (Ve1, Ve2, ...Ve8) and 2 I (Vi1, Vi2) cells # only EE neighbours are connected, all E to I # variables: V-voltage, R-K channel, C-Ca channel, H- Ca dependent K chanel, S,F - synapse # different init condit init Ve1=-0.75 Ve2=-0.745 Ve3=-0.73 Ve4=-0.74 Ve5=-0.72 Ve6=-0.735 Ve7=-0.71 Ve8=-0.715 init Vi1=-0.75 Vi1=-0.71 init Re[1...8]=0.26 init Ce[1...8]=0.1 init He[1...8]=0.1 init Ri[1...2]=0.26 init Ci[1...2]=0.1 par Ie=0.6 #continuos input in all E cells, canceled in I cells par GCe=0.1, GCi=0.25 par GHe=4.0 par TRe[1]=2.1 par TRe[2]=2.2 par TRe[3]=2.3 par TRe[4]=2.15 par TRe[5]=2.25 par TRe[6]=2.16 par TRe[7]=2.12 par TRe[8]=2.22 # this is time constant for K channel in E cells, it is varied from 6 to 2 par GSee=3. #6/2, 3 par GSei=1.5 #6/4 par GSi=3. #from I to E and I to I par TRi[1..2]=1.5 # the same for in I cells, usualy it is not varied par TSe=2., TSi=8. #par ESe=0, ESi=-0.75 #excit=0 inhib=-0.75 par W=-0.1 AlE=Se1+Se2+Se3+Se4+Se5+Se6+Se7+Se8 Fe1'=(1./TSe)*(-Fe1+heav(Ve1-W)) Se1'=(1./TSe)*(-Se1+Fe1) Fe2'=(1./TSe)*(-Fe2+heav(Ve2-W)) Se2'=(1./TSe)*(-Se2+Fe2) Fe3'=(1./TSe)*(-Fe3+heav(Ve3-W)) Se3'=(1./TSe)*(-Se3+Fe3) Fe4'=(1./TSe)*(-Fe4+heav(Ve4-W)) Se4'=(1./TSe)*(-Se4+Fe4) Fe5'=(1./TSe)*(-Fe5+heav(Ve5-W)) Se5'=(1./TSe)*(-Se5+Fe5) Fe6'=(1./TSe)*(-Fe6+heav(Ve6-W)) Se6'=(1./TSe)*(-Se6+Fe6) Fe7'=(1./TSe)*(-Fe7+heav(Ve7-W)) Se7'=(1./TSe)*(-Se7+Fe7) Fe8'=(1./TSe)*(-Fe8+heav(Ve8-W)) Se8'=(1./TSe)*(-Se8+Fe8) AlI=Si1+Si2 Fi1'=(1./TSi)*(-Fi1+heav(Vi1-W)) Si1'=(1./TSi)*(-Si1+Fi1) Fi2'=(1./TSi)*(-Fi2+heav(Vi2-W)) Si2'=(1./TSi)*(-Si2+Fi2) Ve1'=-Minf(Ve1)*(Ve1-0.5)-26.*Re1*(Ve1+0.95)-GCe*Ce1*(Ve1-1.2)-GHe*He1*(Ve1+0.95)-GSi*(Ve1+0.75)*AlI-GSee*(Ve1+0.0)*Se2+Ie Re1'=(1./TRe1)*(-Re1+Rinf(Ve1)) Ce1'=(1./14.)*(-Ce1+Cinf(Ve1)) He1'=(1./45.)*(-He1+3.*Ce1) Ve2'=-Minf(Ve2)*(Ve2-0.5)-26.*Re2*(Ve2+0.95)-GCe*Ce2*(Ve2-1.2)-GHe*He2*(Ve2+0.95)-GSi*(Ve2+0.75)*AlI-GSee*(Ve2+0.0)*(Se1+Se3)+Ie Re2'=(1./TRe2)*(-Re2+Rinf(Ve2)) Ce2'=(1./14.)*(-Ce2+Cinf(Ve2)) He2'=(1./45.)*(-He2+3.*Ce2) Ve3'=-Minf(Ve3)*(Ve3-0.5)-26.*Re3*(Ve3+0.95)-GCe*Ce3*(Ve3-1.2)-GHe*He3*(Ve3+0.95)-GSi*(Ve3+0.75)*AlI-GSee*(Ve3+0.0)*(Se2+Se4)+Ie Re3'=(1./TRe3)*(-Re3+Rinf(Ve3)) Ce3'=(1./14.)*(-Ce3+Cinf(Ve3)) He3'=(1./45.)*(-He3+3.*Ce3) Ve4'=-Minf(Ve4)*(Ve4-0.5)-26.*Re4*(Ve4+0.95)-GCe*Ce4*(Ve4-1.2)-GHe*He4*(Ve4+0.95)-GSi*(Ve4+0.75)*AlI-GSee*(Ve4+0.0)*(Se3+Se5)+Ie Re4'=(1./TRe4)*(-Re4+Rinf(Ve4)) Ce4'=(1./14.)*(-Ce4+Cinf(Ve4)) He4'=(1./45.)*(-He4+3.*Ce4) Ve5'=-Minf(Ve5)*(Ve5-0.5)-26.*Re5*(Ve5+0.95)-GCe*Ce5*(Ve5-1.2)-GHe*He5*(Ve5+0.95)-GSi*(Ve5+0.75)*AlI-GSee*(Ve5+0.0)*(Se4+Se6)+Ie Re5'=(1./TRe5)*(-Re5+Rinf(Ve5)) Ce5'=(1./14.)*(-Ce5+Cinf(Ve5)) He5'=(1./45.)*(-He5+3.*Ce5) Ve6'=-Minf(Ve6)*(Ve6-0.5)-26.*Re6*(Ve6+0.95)-GCe*Ce6*(Ve6-1.2)-GHe*He6*(Ve6+0.95)-GSi*(Ve6+0.75)*AlI-GSee*(Ve6+0.0)*(Se5+Se7)+Ie Re6'=(1./TRe6)*(-Re6+Rinf(Ve6)) Ce6'=(1./14.)*(-Ce6+Cinf(Ve6)) He6'=(1./45.)*(-He6+3.*Ce6) Ve7'=-Minf(Ve7)*(Ve7-0.5)-26.*Re7*(Ve7+0.95)-GCe*Ce7*(Ve7-1.2)-GHe*He7*(Ve7+0.95)-GSi*(Ve7+0.75)*AlI-GSee*(Ve7+0.0)*(Se6+Se8)+Ie Re7'=(1./TRe7)*(-Re7+Rinf(Ve7)) Ce7'=(1./14.)*(-Ce7+Cinf(Ve7)) He7'=(1./45.)*(-He7+3.*Ce7) Ve8'=-Minf(Ve8)*(Ve8-0.5)-26.*Re8*(Ve8+0.95)-GCe*Ce8*(Ve8-1.2)-GHe*He8*(Ve8+0.95)-GSi*(Ve8+0.75)*AlI-GSee*(Ve8+0.0)*Se7+Ie Re8'=(1./TRe8)*(-Re8+Rinf(Ve8)) Ce8'=(1./14.)*(-Ce8+Cinf(Ve8)) He8'=(1./45.)*(-He8+3.*Ce8) Vi1'=-Minf(Vi1)*(Vi1-0.5)-26.*Ri1*(Vi1+0.95)-GCi*Ci1*(Vi1-1.2)-GSi*(Vi1+0.75)*Si2-GSei*(Vi1-0.0)*AlE Ri1'=(1./TRi1)*(-Ri1+Rinf(Vi1)) Ci1'=(1./14.)*(-Ci1+Cinf(Vi1)) Vi2'=-Minf(Vi2)*(Vi2-0.5)-26.*Ri2*(Vi2+0.95)-GCi*Ci2*(Vi2-1.2)-GSi*(Vi2+0.75)*Si1-GSei*(Vi2-0.0)*AlE Ri2'=(1./TRi2)*(-Ri2+Rinf(Vi2)) Ci2'=(1./14.)*(-Ci2+Cinf(Vi2)) Cinf(V)=8.*(V+0.725)^2 Minf(V)=17.8+47.6*V+33.8*V*V Rinf(V)=1.24+3.7*V+3.2*V*V aux n=(Ve1+Ve2+Ve3+Ve4+Ve5+Ve6+Ve7+Ve8)/8. #if(Ve1-W>0)then(Q(Ve1-W)=1)else(Q(Ve1-W)=0) @ METHOD=stiff, TOLERANCE=.00001 @ MAXSTOR=400000, TOTAL=1000, XP=t,YP=n, BELL=0 @ xmin=0.0,xmax=1000,ymin=-1,ymax=0.5 @ DT=0.01, xlo=0.0,ylo=-1.0,xhi=1000,yhi=0.5,bound=30000 done
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Copyright © 2017 Matthias Koenig
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Model :
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type | FunctionDefinitions [7] | name | math | sbo | cvterm |
---|---|---|---|---|---|
FunctionDefinition | max
|
minimum | |||
FunctionDefinition | min
|
maximum | |||
FunctionDefinition | heav
|
heavyside | |||
FunctionDefinition | mod
|
modulo | |||
FunctionDefinition | cinf
|
||||
FunctionDefinition | minf
|
||||
FunctionDefinition | rinf
|
type | Parameters [87] | name | constant | value | unit | derived unit | sbo | cvterm |
---|---|---|---|---|---|---|---|---|
Parameter | ve1
|
ve1 = -0.75 | F | -0.75 | None | |||
Parameter | ve2
|
ve2 = -0.745 | F | -0.745 | None | |||
Parameter | ve3
|
ve3 = -0.73 | F | -0.73 | None | |||
Parameter | ve4
|
ve4 = -0.74 | F | -0.74 | None | |||
Parameter | ve5
|
ve5 = -0.72 | F | -0.72 | None | |||
Parameter | ve6
|
ve6 = -0.735 | F | -0.735 | None | |||
Parameter | ve7
|
ve7 = -0.71 | F | -0.71 | None | |||
Parameter | ve8
|
ve8 = -0.715 | F | -0.715 | None | |||
Parameter | vi1
|
vi1 = -0.75 | F | -0.75 | None | |||
Parameter | vi1
|
vi1 = -0.71 | F | -0.71 | None | |||
Parameter | re[1...8] = 0.26 | F | 0.26 | None | ||||
Parameter | ce[1...8] = 0.1 | F | 0.1 | None | ||||
Parameter | he[1...8] = 0.1 | F | 0.1 | None | ||||
Parameter | ri[1...2] = 0.26 | F | 0.26 | None | ||||
Parameter | ci[1...2] = 0.1 | F | 0.1 | None | ||||
Parameter | ie
|
ie = 0.6 | F | 0.6 | None | |||
Parameter | gce
|
gce = 0.1 | F | 0.1 | None | |||
Parameter | gci
|
gci = 0.25 | F | 0.25 | None | |||
Parameter | ghe
|
ghe = 4.0 | F | 4.0 | None | |||
Parameter | tre[1] = 2.1 | F | 2.1 | None | ||||
Parameter | tre[2] = 2.2 | F | 2.2 | None | ||||
Parameter | tre[3] = 2.3 | F | 2.3 | None | ||||
Parameter | tre[4] = 2.15 | F | 2.15 | None | ||||
Parameter | tre[5] = 2.25 | F | 2.25 | None | ||||
Parameter | tre[6] = 2.16 | F | 2.16 | None | ||||
Parameter | tre[7] = 2.12 | F | 2.12 | None | ||||
Parameter | tre[8] = 2.22 | F | 2.22 | None | ||||
Parameter | gsee
|
gsee = 3. | F | 3.0 | None | |||
Parameter | gsei
|
gsei = 1.5 | F | 1.5 | None | |||
Parameter | gsi
|
gsi = 3. | F | 3.0 | None | |||
Parameter | tri[1..2] = 1.5 | F | 1.5 | None | ||||
Parameter | tse
|
tse = 2. | F | 2.0 | None | |||
Parameter | tsi
|
tsi = 8. | F | 8.0 | None | |||
Parameter | w
|
w = -0.1 | F | -0.1 | None | |||
Parameter | fe1
|
F | 0.0 | dimensionless | None | |||
Parameter | se1
|
F | 0.0 | dimensionless | None | |||
Parameter | fe2
|
F | 0.0 | dimensionless | None | |||
Parameter | se2
|
F | 0.0 | dimensionless | None | |||
Parameter | fe3
|
F | 0.0 | dimensionless | None | |||
Parameter | se3
|
F | 0.0 | dimensionless | None | |||
Parameter | fe4
|
F | 0.0 | dimensionless | None | |||
Parameter | se4
|
F | 0.0 | dimensionless | None | |||
Parameter | fe5
|
F | 0.0 | dimensionless | None | |||
Parameter | se5
|
F | 0.0 | dimensionless | None | |||
Parameter | fe6
|
F | 0.0 | dimensionless | None | |||
Parameter | se6
|
F | 0.0 | dimensionless | None | |||
Parameter | fe7
|
F | 0.0 | dimensionless | None | |||
Parameter | se7
|
F | 0.0 | dimensionless | None | |||
Parameter | fe8
|
F | 0.0 | dimensionless | None | |||
Parameter | se8
|
F | 0.0 | dimensionless | None | |||
Parameter | fi1
|
F | 0.0 | dimensionless | None | |||
Parameter | si1
|
F | 0.0 | dimensionless | None | |||
Parameter | fi2
|
F | 0.0 | dimensionless | None | |||
Parameter | si2
|
F | 0.0 | dimensionless | None | |||
Parameter | re1
|
F | 0.0 | dimensionless | None | |||
Parameter | ce1
|
F | 0.0 | dimensionless | None | |||
Parameter | he1
|
F | 0.0 | dimensionless | None | |||
Parameter | re2
|
F | 0.0 | dimensionless | None | |||
Parameter | ce2
|
F | 0.0 | dimensionless | None | |||
Parameter | he2
|
F | 0.0 | dimensionless | None | |||
Parameter | re3
|
F | 0.0 | dimensionless | None | |||
Parameter | ce3
|
F | 0.0 | dimensionless | None | |||
Parameter | he3
|
F | 0.0 | dimensionless | None | |||
Parameter | re4
|
F | 0.0 | dimensionless | None | |||
Parameter | ce4
|
F | 0.0 | dimensionless | None | |||
Parameter | he4
|
F | 0.0 | dimensionless | None | |||
Parameter | re5
|
F | 0.0 | dimensionless | None | |||
Parameter | ce5
|
F | 0.0 | dimensionless | None | |||
Parameter | he5
|
F | 0.0 | dimensionless | None | |||
Parameter | re6
|
F | 0.0 | dimensionless | None | |||
Parameter | ce6
|
F | 0.0 | dimensionless | None | |||
Parameter | he6
|
F | 0.0 | dimensionless | None | |||
Parameter | re7
|
F | 0.0 | dimensionless | None | |||
Parameter | ce7
|
F | 0.0 | dimensionless | None | |||
Parameter | he7
|
F | 0.0 | dimensionless | None | |||
Parameter | re8
|
F | 0.0 | dimensionless | None | |||
Parameter | ce8
|
F | 0.0 | dimensionless | None | |||
Parameter | he8
|
F | 0.0 | dimensionless | None | |||
Parameter | ri1
|
F | 0.0 | dimensionless | None | |||
Parameter | ci1
|
F | 0.0 | dimensionless | None | |||
Parameter | vi2
|
F | 0.0 | dimensionless | None | |||
Parameter | ri2
|
F | 0.0 | dimensionless | None | |||
Parameter | ci2
|
F | 0.0 | dimensionless | None | |||
Parameter | ale
|
F | 0.0 | dimensionless | None | |||
Parameter | ali
|
F | 0.0 | dimensionless | None | |||
Parameter | n
|
F | 0.0 | dimensionless | None | |||
Parameter | t
|
model time | F | 0.0 | dimensionless | None |
type | Rules [62] | assignment | name | derived units | sbo | cvterm | |
---|---|---|---|---|---|---|---|
Rule | d fe1/dt
|
= | None | ||||
Rule | d se1/dt
|
= | None | ||||
Rule | d fe2/dt
|
= | None | ||||
Rule | d se2/dt
|
= | None | ||||
Rule | d fe3/dt
|
= | None | ||||
Rule | d se3/dt
|
= | None | ||||
Rule | d fe4/dt
|
= | None | ||||
Rule | d se4/dt
|
= | None | ||||
Rule | d fe5/dt
|
= | None | ||||
Rule | d se5/dt
|
= | None | ||||
Rule | d fe6/dt
|
= | None | ||||
Rule | d se6/dt
|
= | None | ||||
Rule | d fe7/dt
|
= | None | ||||
Rule | d se7/dt
|
= | None | ||||
Rule | d fe8/dt
|
= | None | ||||
Rule | d se8/dt
|
= | None | ||||
Rule | d fi1/dt
|
= | None | ||||
Rule | d si1/dt
|
= | None | ||||
Rule | d fi2/dt
|
= | None | ||||
Rule | d si2/dt
|
= | None | ||||
Rule | d ve1/dt
|
= | None | ||||
Rule | d re1/dt
|
= | None | ||||
Rule | d ce1/dt
|
= | None | ||||
Rule | d he1/dt
|
= | None | ||||
Rule | d ve2/dt
|
= | None | ||||
Rule | d re2/dt
|
= | None | ||||
Rule | d ce2/dt
|
= | None | ||||
Rule | d he2/dt
|
= | None | ||||
Rule | d ve3/dt
|
= | None | ||||
Rule | d re3/dt
|
= | None | ||||
Rule | d ce3/dt
|
= | None | ||||
Rule | d he3/dt
|
= | None | ||||
Rule | d ve4/dt
|
= | None | ||||
Rule | d re4/dt
|
= | None | ||||
Rule | d ce4/dt
|
= | None | ||||
Rule | d he4/dt
|
= | None | ||||
Rule | d ve5/dt
|
= | None | ||||
Rule | d re5/dt
|
= | None | ||||
Rule | d ce5/dt
|
= | None | ||||
Rule | d he5/dt
|
= | None | ||||
Rule | d ve6/dt
|
= | None | ||||
Rule | d re6/dt
|
= | None | ||||
Rule | d ce6/dt
|
= | None | ||||
Rule | d he6/dt
|
= | None | ||||
Rule | d ve7/dt
|
= | None | ||||
Rule | d re7/dt
|
= | None | ||||
Rule | d ce7/dt
|
= | None | ||||
Rule | d he7/dt
|
= | None | ||||
Rule | d ve8/dt
|
= | None | ||||
Rule | d re8/dt
|
= | None | ||||
Rule | d ce8/dt
|
= | None | ||||
Rule | d he8/dt
|
= | None | ||||
Rule | d vi1/dt
|
= | None | ||||
Rule | d ri1/dt
|
= | None | ||||
Rule | d ci1/dt
|
= | None | ||||
Rule | d vi2/dt
|
= | None | ||||
Rule | d ri2/dt
|
= | None | ||||
Rule | d ci2/dt
|
= | None | ||||
Rule | ale
|
= | None | ||||
Rule | ali
|
= | None | ||||
Rule | n
|
= | None | ||||
Rule | t
|
= | None |