gene.family,species,chr,start,end,strand,domain.code,gene_id,gene_name,biotype,orthogroup,annotated
MHCI,human,chr6,29723672,29723929,+,MHC_I,ENSG00000204642,HLA-F,protein_coding;processed_transcript,aa_OG0000000,TRUE
MHCI,human,chr6,29724172,29724438,+,MHC_I,ENSG00000204642,HLA-F,protein_coding;processed_transcript,aa_OG0000000,TRUE
MHCI,human,chr6,29725021,29725335,+,IgC1_MHC_I_alpha3,ENSG00000204642,HLA-F,protein_coding;processed_transcript,aa_OG0000000,TRUE
MHCI,human,chr6,29792436,29792702,+,MHC_I,ENSG00000181126,HLA-V,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29792966,29793193,+,MHC_I,ENSG00000181126,HLA-V,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29800448,29800576,+,MHC_I,ENSG00000261548,HLA-P,unprocessed_pseudogene,rna_OG0050236,TRUE
MHCI,human,chr6,29801252,29801551,+,IgC1_MHC_Ia_HLA-B,ENSG00000261548,HLA-P,unprocessed_pseudogene,rna_OG0050236,TRUE
MHCI,human,chr6,29828046,29828312,+,MHC_I,ENSG00000204632;MIM:142871_NC_000006,HLA-G;HLA-G_NC_000006.12,protein_coding;retained_intron;nonsense_mediated_decay;NA,aa_OG0000000,TRUE
MHCI,human,chr6,29828542,29828808,+,MHC_I,ENSG00000204632;MIM:142871_NC_000006,HLA-G;HLA-G_NC_000006.12,protein_coding;retained_intron;NA,aa_OG0000000,TRUE
MHCI,human,chr6,29829411,29829698,+,IgC1_MHC_Ia_HLA-G,ENSG00000204632;MIM:142871_NC_000006,HLA-G;HLA-G_NC_000006.12,protein_coding;retained_intron;nonsense_mediated_decay;NA,aa_OG0000000,TRUE
MHCI,human,chr6,29887966,29888226,+,MHC_I,ENSG00000206341,HLA-H,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29888466,29888732,+,MHC_I,ENSG00000206341,HLA-H,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29889313,29889603,+,IgC1_MHC_I_alpha3,ENSG00000206341,HLA-H,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29896647,29896940,+,IgC1_MHC_Ib_HLA-Cw3-4,ENSG00000231130,HLA-T,unprocessed_pseudogene,rna_OG0050238,TRUE
MHCI,human,chr6,29926620,29926931,+,MHC_I,ENSG00000230795,HLA-K,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29927177,29927482,+,MHC_I,ENSG00000230795,HLA-K,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29928016,29928354,+,IgC1_MHC_I_alpha3,ENSG00000230795,HLA-K,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,29934101,29934286,+,MHC_I,ENSG00000228078,HLA-U,unprocessed_pseudogene,rna_OG0055379,TRUE
MHCI,human,chr6,29942756,29943028,+,MHC_I,ENSG00000206503,HLA-A,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,29943267,29943542,+,MHC_I,ENSG00000206503,HLA-A,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,29944118,29944396,+,IgC1_MHC_I_alpha3,ENSG00000206503,HLA-A,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,29956595,29956846,+,MHC_I,ENSG00000235290,HLA-W,unprocessed_pseudogene,rna_OG0035915,TRUE
MHCI,human,chr6,29957404,29957718,+,IgC1_MHC_Ia_HLA-B,ENSG00000235290,HLA-W,unprocessed_pseudogene,rna_OG0035915,TRUE
MHCI,human,chr6,30006811,30007071,+,MHC_I,ENSG00000204622,HLA-J,processed_transcript;transcribed_unprocessed_pseudogene,rna_OG0029433,TRUE
MHCI,human,chr6,30007317,30007583,+,MHC_I,ENSG00000204622,HLA-J,transcribed_unprocessed_pseudogene,rna_OG0029433,TRUE
MHCI,human,chr6,30008174,30008461,+,IgC1_MHC_I_alpha3,ENSG00000204622,HLA-J,processed_transcript;transcribed_unprocessed_pseudogene,rna_OG0029433,TRUE
MHCI,human,chr6,30259814,30260086,+,MHC_I,ENSG00000243753,HLA-L,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,30260336,30260597,+,MHC_I,ENSG00000243753,HLA-L,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,30261200,30261478,+,IgC1_MHC_I_alpha3,ENSG00000243753,HLA-L,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,human,chr6,30351314,30351550,+,IgC1_MHC_Ia_HLA-B,ENSG00000224372,HLA-N,unprocessed_pseudogene,rna_OG0034208,TRUE
MHCI,human,chr6,30489737,30489997,+,MHC_I,ENSG00000204592,HLA-E,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,30490200,30490556,+,MHC_I,ENSG00000204592,HLA-E,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,30491133,30491417,+,IgC1_MHC_I_alpha3,ENSG00000204592,HLA-E,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,31270166,31270489,-,IgC1_MHC_I_alpha3,ENSG00000204525,HLA-C,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,human,chr6,31271083,31271349,-,MHC_I,ENSG00000204525,HLA-C,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,human,chr6,31271597,31271857,-,MHC_I,ENSG00000204525,HLA-C,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,human,chr6,31307806,31307982,-,MHC_I,ENSG00000229836;112267902_NC_000006,AL671883.1;LOC112267902_NC_000006.12,unprocessed_pseudogene;NA,rna_OG0028569,TRUE
MHCI,human,chr6,31355312,31355596,-,IgC1_MHC_I_alpha3,ENSG00000234745;ENSG00000277402;miRBase:MIMAT0027682_NC_000006,HLA-B;MIR6891;MIR6891_NC_000006.12,protein_coding;retained_intron;miRNA;NA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,human,chr6,31356177,31356443,-,MHC_I,ENSG00000234745,HLA-B,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,31356686,31356946,-,MHC_I,ENSG00000234745,HLA-B,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,human,chr6,31515916,31516211,+,IgC1_MHC_I_alpha3,ENSG00000256851,AL663061.1,unprocessed_pseudogene,NA,TRUE
MHCI,human,chr6,32896413,32896517,+,IgC1_MHC_Ib_HLA-Cw3-4,ENSG00000235301,HLA-Z,unprocessed_pseudogene,rna_OG0031553,TRUE
MHCI,mouse,chr17,28946637,28946795,-,IgC1_MHC_I_alpha3,ENSMUSG00000117116,Gm49868,processed_pseudogene,NA,TRUE
MHCI,mouse,chr17,33975742,33976014,-,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000067203,H2-K2,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,33977772,33978047,-,MHC_I,ENSMUSG00000067203,H2-K2,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,33978249,33978524,-,MHC_I,ENSMUSG00000067203,H2-K2,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,33997238,33997594,-,IgC1_MHC_Ia_H-2Kb,ENSMUSG00000061232,H2-K1,protein_coding;retained_intron;processed_transcript,aa_OG0000000,TRUE
MHCI,mouse,chr17,33999272,33999547,-,MHC_I,ENSMUSG00000061232,H2-K1,protein_coding;retained_intron;processed_transcript,aa_OG0000000,TRUE
MHCI,mouse,chr17,33999732,34000097,-,MHC_I,ENSMUSG00000061232,H2-K1,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35263372,35263650,+,MHC_I,ENSMUSG00000073411;14980,H2-D1;H2-L,protein_coding;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,35263826,35264113,+,MHC_I,ENSMUSG00000073411;14980,H2-D1;H2-L,protein_coding;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,35265750,35266106,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000073411;14980,H2-D1;H2-L,protein_coding;retained_intron;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,35320820,35321092,+,MHC_I,ENSMUSG00000079507,H2-Q1,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35321274,35321549,+,MHC_I,ENSMUSG00000079507,H2-Q1,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35323030,35323362,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000079507,H2-Q1,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35342593,35342871,+,MHC_I,ENSMUSG00000091705,H2-Q2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35343112,35343387,+,MHC_I,ENSMUSG00000091705,H2-Q2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35344724,35345077,+,IgC1_MHC_I_alpha3,ENSMUSG00000091705,H2-Q2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,35359255,35359527,+,MHC_I,ENSMUSG00000092253,H2-Q3,unprocessed_pseudogene,rna_OG0073559,TRUE
MHCI,mouse,chr17,35359706,35359981,+,MHC_I,ENSMUSG00000092253,H2-Q3,unprocessed_pseudogene,rna_OG0073559,TRUE
MHCI,mouse,chr17,35379903,35380175,+,MHC_I,ENSMUSG00000035929,H2-Q4,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35380360,35380635,+,MHC_I,ENSMUSG00000035929,H2-Q4,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35382824,35383180,+,IgC1_MHC_I_alpha3,ENSMUSG00000035929,H2-Q4,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35394356,35394628,+,MHC_I,ENSMUSG00000055413,H2-Q5,retained_intron;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,35394810,35395022,+,MHC_I,ENSMUSG00000055413,H2-Q5,retained_intron;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,35397036,35397374,+,IgC1_MHC_I_alpha3,ENSMUSG00000055413,H2-Q5,polymorphic_pseudogene;processed_transcript,aa_OG0000000,TRUE
MHCI,mouse,chr17,35425107,35425379,+,MHC_I,ENSMUSG00000073409,H2-Q6,protein_coding,rna_OG0038572,TRUE
MHCI,mouse,chr17,35425570,35425845,+,MHC_I,ENSMUSG00000073409,H2-Q6,protein_coding,rna_OG0038572,TRUE
MHCI,mouse,chr17,35427833,35428186,+,IgC1_MHC_Ib_Qa-2,ENSMUSG00000073409,H2-Q6,protein_coding,rna_OG0038572,TRUE
MHCI,mouse,chr17,35439451,35439723,+,MHC_I,ENSMUSG00000060550,H2-Q7,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35439908,35440183,+,MHC_I,ENSMUSG00000060550,H2-Q7,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35442236,35442574,+,IgC1_MHC_Ib_Qa-2,ENSMUSG00000060550,H2-Q7,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35470375,35471100,+,MHC_I,ENSMUSG00000067235,H2-Q10,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,35473052,35473405,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000067235,H2-Q10,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,mouse,chr17,36014768,36015088,-,IgC1_MHC_I_alpha3,ENSMUSG00000053835,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36015385,36015657,-,MHC_I,ENSMUSG00000053835,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36017284,36017550,-,MHC_I,ENSMUSG00000053835,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36030775,36031134,-,IgC1_MHC_1b_Qa-1b,ENSMUSG00000067212,H2-T23,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36031597,36031911,-,MHC_I,ENSMUSG00000067212,H2-T23,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36032151,36032423,-,MHC_I,ENSMUSG00000067212,H2-T23,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36040431,36040958,-,IgC1_MHC_Ib_T10_T22_like,ENSMUSG00000056116,H2-T22,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36041450,36041683,-,MHC_I,ENSMUSG00000056116,H2-T22,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36041812,36042129,-,MHC_I,ENSMUSG00000056116,H2-T22,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36056545,36056841,-,IgC1_MHC_Ib_T10_T22_like,ENSMUSG00000079492,Gm11127,protein_coding,rna_OG0047224,TRUE
MHCI,mouse,chr17,36057429,36057689,-,MHC_I,ENSMUSG00000079492,Gm11127,protein_coding,rna_OG0047224,TRUE
MHCI,mouse,chr17,36057839,36058201,-,MHC_I,ENSMUSG00000079492,Gm11127,protein_coding,rna_OG0047224,TRUE
MHCI,mouse,chr17,36066068,36066415,-,IgC1_MHC_I_alpha3,ENSMUSG00000091373,Gm8810,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36067216,36067350,-,MHC_I,ENSMUSG00000091373,Gm8810,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36067523,36067764,-,MHC_I,ENSMUSG00000091373,Gm8810,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36081195,36081569,-,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000073406,H2-Bl,retained_intron;polymorphic_pseudogene;nonsense_mediated_decay;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36083234,36083509,-,MHC_I,ENSMUSG00000073406,H2-Bl,polymorphic_pseudogene;nonsense_mediated_decay;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36083694,36083966,-,MHC_I,ENSMUSG00000073406,H2-Bl,polymorphic_pseudogene;nonsense_mediated_decay;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36095186,36095461,-,IgC1_MHC_I_alpha3,ENSMUSG00000092224,Gm8815,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36096548,36096688,-,MHC_I,ENSMUSG00000092224,Gm8815,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36096691,36096810,-,MHC_I,ENSMUSG00000092224,Gm8815,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36109810,36110172,-,IgC1_MHC_Ib_T10_T22_like,ENSMUSG00000073405;667803_NC_000083,H2-T-ps;H2-T-ps_NC_000083.6,unprocessed_pseudogene;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36110627,36110941,-,MHC_I,ENSMUSG00000073405;667803_NC_000083,H2-T-ps;H2-T-ps_NC_000083.6,unprocessed_pseudogene;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36111155,36111433,-,MHC_I,ENSMUSG00000073405;667803_NC_000083,H2-T-ps;H2-T-ps_NC_000083.6,unprocessed_pseudogene;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36119142,36119501,-,IgC1_MHC_Ib_T10_T22_like,ENSMUSG00000079491,H2-T10,retained_intron;protein_coding;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36120186,36120257,-,MHC_I,ENSMUSG00000079491,H2-T10,retained_intron;protein_coding;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36120278,36120430,-,MHC_I,ENSMUSG00000079491,H2-T10,retained_intron;protein_coding;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36120559,36120876,-,MHC_I,ENSMUSG00000079491,H2-T10,retained_intron;protein_coding;polymorphic_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36127604,36127900,-,IgC1_MHC_I_alpha3,ENSMUSG00000092243,Gm7030,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36128481,36128741,-,MHC_I,ENSMUSG00000092243,Gm7030,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36128893,36129165,-,MHC_I,ENSMUSG00000092243,Gm7030,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36137192,36137488,-,IgC1_MHC_I_alpha3,ENSMUSG00000073980,Gm9574,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36138246,36138422,-,MHC_I,ENSMUSG00000073980,Gm9574,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36138595,36138872,-,MHC_I,ENSMUSG00000073980,Gm9574,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36143105,36143437,-,IgC1_MHC_Ia_H2Db_H2Ld,ENSMUSG00000073403;69717_NC_000083,Gm10499;Gm10499_NC_000083.6,retained_intron;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36144913,36145188,-,MHC_I,ENSMUSG00000073403;69717_NC_000083,Gm10499;Gm10499_NC_000083.6,retained_intron;transcribed_unprocessed_pseudogene;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36145386,36145658,-,MHC_I,ENSMUSG00000073403;69717_NC_000083,Gm10499;Gm10499_NC_000083.6,retained_intron;transcribed_unprocessed_pseudogene;NA,aa_OG0000000,TRUE
MHCI,mouse,chr17,36156535,36156924,-,IgC1_MHC_I_alpha3,ENSMUSG00000092366,Gm17782,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36161078,36161435,-,MHC_I,ENSMUSG00000092366,Gm17782,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36161541,36161576,-,MHC_I,ENSMUSG00000092366,Gm17782,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36161584,36161811,-,MHC_I,ENSMUSG00000092366,Gm17782,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36165594,36165908,-,IgC1_MHC_1b_Qa-1b,ENSMUSG00000073402,Gm8909,protein_coding;processed_transcript,aa_OG0000000,TRUE
MHCI,mouse,chr17,36167434,36167709,-,MHC_I,ENSMUSG00000073402,Gm8909,protein_coding;processed_transcript,aa_OG0000000,TRUE
MHCI,mouse,chr17,36167924,36168241,-,MHC_I,ENSMUSG00000073402,Gm8909,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36178220,36178285,-,MHC_I,ENSMUSG00000092480,Gm20495,NA,NA,FALSE
MHCI,mouse,chr17,36182194,36182430,-,MHC_I,ENSMUSG00000092480,Gm20495,unprocessed_pseudogene,rna_OG0028073,TRUE
MHCI,mouse,chr17,36187204,36187548,-,IgC1_MHC_H-2_TLA,ENSMUSG00000054128,H2-T3,protein_coding;retained_intron;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36189190,36189453,-,MHC_I,ENSMUSG00000054128,H2-T3,protein_coding;retained_intron;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36189599,36190018,-,MHC_I,ENSMUSG00000054128,H2-T3,protein_coding;retained_intron;nonsense_mediated_decay,aa_OG0000000,TRUE
MHCI,mouse,chr17,36197548,36197679,-,MHC_I,ENSMUSG00000092306,Gm20447,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36197693,36198241,-,MHC_I,ENSMUSG00000092306,Gm20447,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36203145,36203503,-,IgC1_MHC_I_alpha3,ENSMUSG00000092457,Gm8835,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36205367,36205604,-,MHC_I,ENSMUSG00000092457,Gm8835,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36205789,36206061,-,MHC_I,ENSMUSG00000092457,Gm8835,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36210932,36211203,-,IgC1_MHC_I_alpha3,ENSMUSG00000092265,Gm5682,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36215473,36216165,-,MHC_I,ENSMUSG00000092362,Gm20392,unprocessed_pseudogene,rna_OG0028073,TRUE
MHCI,mouse,chr17,36224990,36225280,-,MHC_I,chr17_2:1,chr17_2:1,NA,NA,FALSE
MHCI,mouse,chr17,36237244,36237360,-,MHC_I,ENSMUSG00000092363,Gm20391,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36284503,36284823,-,IgC1_MHC_I_alpha3,ENSMUSG00000023083,H2-M10.2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36285346,36285609,-,MHC_I,ENSMUSG00000023083,H2-M10.2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36285841,36286116,-,MHC_I,ENSMUSG00000023083,H2-M10.2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36324238,36324558,-,IgC1_MHC_I_alpha3,ENSMUSG00000024448,H2-M10.1,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36325062,36325346,-,MHC_I,ENSMUSG00000024448,H2-M10.1,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36325593,36325838,-,MHC_I,ENSMUSG00000024448,H2-M10.1,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36366488,36366808,-,IgC1_MHC_I_alpha3,ENSMUSG00000058124,H2-M10.3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36367311,36367586,-,MHC_I,ENSMUSG00000058124,H2-M10.3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36367833,36368108,-,MHC_I,ENSMUSG00000058124,H2-M10.3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36407617,36407886,-,IgC1_MHC_I_alpha3,ENSMUSG00000092508,H2-M10.5-ps1,unprocessed_pseudogene,aa_OG0000519,TRUE
MHCI,mouse,chr17,36408466,36408762,-,MHC_I,ENSMUSG00000092508,H2-M10.5-ps1,unprocessed_pseudogene,aa_OG0000519,TRUE
MHCI,mouse,chr17,36425100,36425333,+,MHC_I,chr17_3:1,chr17_3:1,NA,NA,FALSE
MHCI,mouse,chr17,36437196,36437333,-,MHC_I,chr17_3:2,chr17_3:2,NA,NA,FALSE
MHCI,mouse,chr17,36460385,36460705,-,IgC1_MHC_I_alpha3,ENSMUSG00000048231,H2-M10.4,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36461231,36461506,-,MHC_I,ENSMUSG00000048231,H2-M10.4,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36461744,36462016,-,MHC_I,ENSMUSG00000048231,H2-M10.4,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36501000,36501317,+,IgC1_MHC_I_alpha3,ENSMUSG00000092290,Gm20452,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36507015,36507239,+,MHC_I,ENSMUSG00000092493,Gm20451,unprocessed_pseudogene,aa_OG0015957,TRUE
MHCI,mouse,chr17,36508713,36509043,+,IgC1_MHC_Ib_HLA-E,ENSMUSG00000092493,Gm20451,unprocessed_pseudogene,aa_OG0015957,TRUE
MHCI,mouse,chr17,36546635,36546811,-,MHC_I,ENSMUSG00000037537,H2-M11,NA,NA,FALSE
MHCI,mouse,chr17,36547388,36547660,+,MHC_I,ENSMUSG00000037537,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36547912,36548193,+,MHC_I,ENSMUSG00000037537,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36548750,36549025,+,IgC1_MHC_I_alpha3,ENSMUSG00000037537,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36557827,36558075,-,MHC_I,chr17_5:1,chr17_5:1,NA,NA,FALSE
MHCI,mouse,chr17,36597889,36598068,+,IgC1_MHC_I_alpha3,ENSMUSG00000092606,Gm20450,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36640673,36640987,-,IgC1_MHC_I_alpha3,ENSMUSG00000067201,H2-M9,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36641529,36641810,-,MHC_I,ENSMUSG00000067201,H2-M9,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36642069,36642341,-,MHC_I,ENSMUSG00000067201,H2-M9,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36670236,36670550,-,IgC1_MHC_I_alpha3,ENSMUSG00000037334,H2-M1,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36671087,36671368,-,MHC_I,ENSMUSG00000037334,H2-M1,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36671625,36671894,-,MHC_I,ENSMUSG00000037334,H2-M1,protein_coding,rna_OG0063927,TRUE
MHCI,mouse,chr17,36723947,36724066,+,MHC_I,ENSMUSG00000092435,Gm20526,unprocessed_pseudogene,NA,TRUE
MHCI,mouse,chr17,36732995,36733132,+,MHC_I,ENSMUSG00000092521,Gm4271,unprocessed_pseudogene,aa_OG0000519,TRUE
MHCI,mouse,chr17,36733425,36733721,+,MHC_I,ENSMUSG00000092521,Gm4271,unprocessed_pseudogene,aa_OG0000519,TRUE
MHCI,mouse,chr17,36734245,36734520,+,IgC1_MHC_I_alpha3,ENSMUSG00000092521,Gm4271,unprocessed_pseudogene,aa_OG0000519,TRUE
MHCI,mouse,chr17,36773217,36773489,+,MHC_I,ENSMUSG00000037246,H2-M10.5,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36773731,36774006,+,MHC_I,ENSMUSG00000037246,H2-M10.5,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36774527,36774847,+,IgC1_MHC_I_alpha3,ENSMUSG00000037246,H2-M10.5,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36812482,36812676,+,MHC_I,ENSMUSG00000037130,H2-M10.6,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36812970,36813266,+,MHC_I,ENSMUSG00000037130,H2-M10.6,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36813769,36814089,+,IgC1_MHC_I_alpha3,ENSMUSG00000037130,H2-M10.6,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36969414,36969727,-,IgC1_MHC_I_alpha3,ENSMUSG00000083534,H2-M6-ps,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36970331,36970378,-,MHC_I,ENSMUSG00000083534,H2-M6-ps,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36970386,36970595,-,MHC_I,ENSMUSG00000083534,H2-M6-ps,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36970839,36971120,-,MHC_I,ENSMUSG00000083534,H2-M6-ps,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,mouse,chr17,36978649,36978948,-,IgC1_MHC_I_alpha3,ENSMUSG00000064308,2410137M14Rik,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36980642,36980911,-,MHC_I,ENSMUSG00000064308,2410137M14Rik,NA,NA,FALSE
MHCI,mouse,chr17,36981338,36981403,-,MHC_I,ENSMUSG00000064308,2410137M14Rik,NA,NA,FALSE
MHCI,mouse,chr17,36987656,36987982,-,IgC1_MHC_I_alpha3,ENSMUSG00000024459;240095_NC_000083,H2-M5;H2-M5_NC_000083.6,retained_intron;protein_coding;NA,aa_OG0000000;rna_OG0038612,TRUE
MHCI,mouse,chr17,36988506,36988781,-,MHC_I,ENSMUSG00000024459,H2-M5,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,36988906,36989217,-,MHC_I,ENSMUSG00000024459,H2-M5,retained_intron;protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37270521,37270793,+,MHC_I,ENSMUSG00000016206,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37270997,37271263,+,MHC_I,ENSMUSG00000016206,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37272277,37272576,+,IgC1_MHC_I_alpha3,ENSMUSG00000016206,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37481467,37481748,-,IgC1_MHC_I_alpha3,ENSMUSG00000016283,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37482484,37482768,-,MHC_I,ENSMUSG00000016283,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,mouse,chr17,37482981,37483247,-,MHC_I,ENSMUSG00000016283,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,8,9156048,9156257,+,IgC1_MHC_I_alpha3,8_1:1,8_1:1,NA,NA,FALSE
MHCI,rat,8,9156283,9156375,+,IgC1_MHC_Ia_HLA-F,8_1:1,8_1:1,NA,NA,FALSE
MHCI,rat,14,1482642,1482974,-,IgC1_MHC_Ia_RT1-Aa,14_1:1,14_1:1,NA,NA,FALSE
MHCI,rat,14,1483715,1483987,-,MHC_I,14_1:1,14_1:1,NA,NA,FALSE
MHCI,rat,14,1484236,1484460,-,MHC_I,14_1:1,14_1:1,NA,NA,FALSE
MHCI,rat,17,13537916,13538119,-,IgC1_MHC_Ia_HLA-G,17_1:1,17_1:1,NA,NA,FALSE
MHCI,rat,20,128320,128460,-,IgC1_MHC_I_alpha3,20_1:1,20_1:1,NA,NA,FALSE
MHCI,rat,20,131838,131978,-,IgC1_MHC_I_alpha3,20_1:2,20_1:2,NA,NA,FALSE
MHCI,rat,20,155334,155648,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000050210,RT1-CE10,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,156679,156960,-,MHC_I,ENSRNOG00000050210,RT1-CE10,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,157127,157399,-,MHC_I,ENSRNOG00000050210,RT1-CE10,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,1309773,1310051,-,IgC1_MHC_1b_Qa-1b,20_2:1,20_2:1,NA,NA,FALSE
MHCI,rat,20,1311173,1311439,-,MHC_I,20_2:1,20_2:1,NA,NA,FALSE
MHCI,rat,20,1311667,1311840,-,MHC_I,20_2:1,20_2:1,NA,NA,FALSE
MHCI,rat,20,1337498,1337842,-,IgC1_MHC_I_alpha3,ENSRNOG00000049590,RT1-M2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,1338470,1338748,-,MHC_I,ENSRNOG00000049590,RT1-M2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,1338963,1339256,-,MHC_I,ENSRNOG00000049590,RT1-M2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,1524218,1524310,+,MHC_I,20_3:1,20_3:1,NA,NA,FALSE
MHCI,rat,20,1816523,1816804,-,IgC1_MHC_I_alpha3,ENSRNOG00000000763;RGD:3494,RT1-M3-1,protein_coding,aa_OG0000000;aa_OG0016175,TRUE
MHCI,rat,20,1817772,1818038,-,MHC_I,ENSRNOG00000000763;RGD:3494,RT1-M3-1,protein_coding,aa_OG0000000;aa_OG0016175,TRUE
MHCI,rat,20,1818187,1818510,-,MHC_I,ENSRNOG00000000763;RGD:3494,RT1-M3-1,protein_coding,aa_OG0000000;aa_OG0016175,TRUE
MHCI,rat,20,1832547,1832803,-,MHC_I,ENSRNOG00000060503;RGD:3494;RGD:1597083,AC112568.5;RT1-M3-1;RT1-M3-2-ps,processed_pseudogene;protein_coding;pseudogene,rna_OG0142780;aa_OG0016175,TRUE
MHCI,rat,20,1832992,1833285,-,MHC_I,ENSRNOG00000060503;RGD:3494;RGD:1597083,AC112568.5;RT1-M3-1;RT1-M3-2-ps,processed_pseudogene;protein_coding;pseudogene,rna_OG0142780;aa_OG0016175,TRUE
MHCI,rat,20,2038542,2038871,-,IgC1_MHC_I_alpha3,ENSRNOG00000033136,RT1-M5,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2039406,2039678,-,MHC_I,ENSRNOG00000033136,RT1-M5,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2039825,2040097,-,MHC_I,ENSRNOG00000033136,RT1-M5,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2044029,2044301,+,MHC_I,ENSRNOG00000060412,RT1-M4,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2044527,2044793,+,MHC_I,ENSRNOG00000060412,RT1-M4,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2046764,2047237,+,IgC1_MHC_I_alpha3,ENSRNOG00000060412,RT1-M4,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2058190,2058471,+,MHC_I,ENSRNOG00000022107;RGD:1598232,RT1-M6-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2058654,2058917,+,MHC_I,ENSRNOG00000022107;RGD:1598232,RT1-M6-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2059502,2059798,+,IgC1_MHC_I_alpha3,ENSRNOG00000022107;RGD:1598232,RT1-M6-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2076570,2076857,+,MHC_I,ENSRNOG00000040052;RGD:1595815,RT1-M6-2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2077044,2077307,+,MHC_I,ENSRNOG00000040052;RGD:1595815,RT1-M6-2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2077896,2078210,+,IgC1_MHC_I_alpha3,ENSRNOG00000040052;RGD:1595815,RT1-M6-2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2268332,2268637,-,IgC1_MHC_I_alpha3,ENSRNOG00000042370;RGD:1597069,AABR07044308.1;RT1-M10-4-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2269186,2269458,-,MHC_I,ENSRNOG00000042370;RGD:1597069,AABR07044308.1;RT1-M10-4-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2269778,2269969,-,MHC_I,ENSRNOG00000042370;RGD:1597069,AABR07044308.1;RT1-M10-4-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2277455,2277622,+,MHC_I,20_4:1,20_4:1,NA,NA,FALSE
MHCI,rat,20,2290632,2290937,-,IgC1_MHC_I_alpha3,ENSRNOG00000051398;RGD:1597071,AABR07044308.2;RT1-M10-3-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2291470,2291745,-,MHC_I,ENSRNOG00000051398;RGD:1597071,AABR07044308.2;RT1-M10-3-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2292037,2292228,-,MHC_I,ENSRNOG00000051398;RGD:1597071,AABR07044308.2;RT1-M10-3-ps,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2298441,2298623,-,MHC_I,20_5:1,20_5:1,NA,NA,FALSE
MHCI,rat,20,2317293,2317391,+,MHC_I,20_5:2,20_5:2,NA,NA,FALSE
MHCI,rat,20,2322599,2322835,+,IgC1_MHC_Ib_HLA-E,20_5:3,20_5:3,NA,NA,FALSE
MHCI,rat,20,2346299,2346571,+,MHC_I,20_5:4,20_5:4,NA,NA,FALSE
MHCI,rat,20,2356287,2356559,+,MHC_I,ENSRNOG00000028035;680842,AABR07072807.1;RT1-M1-5,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2356816,2357115,+,MHC_I,ENSRNOG00000028035;680842,AABR07072807.1;RT1-M1-5,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2357261,2357539,+,IgC1_MHC_I_alpha3,ENSRNOG00000028035;680842,AABR07072807.1;RT1-M1-5,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2388961,2389266,-,IgC1_MHC_I_alpha3,ENSRNOG00000027873;294213,AC120486.1;RT1-M1-4,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2389822,2390103,-,MHC_I,ENSRNOG00000027873;294213,AC120486.1;RT1-M1-4,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2390362,2390634,-,MHC_I,ENSRNOG00000027873;294213,AC120486.1;RT1-M1-4,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2391143,2391397,+,MHC_I,ENSRNOG00000027873;294213,AC120486.1;RT1-M1-4,NA,NA,FALSE
MHCI,rat,20,2391950,2392180,+,IgC1_MHC_I_alpha3,ENSRNOG00000027873;294213,AC120486.1;RT1-M1-4,NA,NA,FALSE
MHCI,rat,20,2408247,2408609,-,IgC1_MHC_I_alpha3,ENSRNOG00000031065,AC120486.2,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2409118,2409399,-,MHC_I,ENSRNOG00000031065,AC120486.2,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2409649,2409930,-,MHC_I,ENSRNOG00000031065,AC120486.2,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2435497,2435680,-,IgC1_MHC_I_alpha3,ENSRNOG00000061923;RGD:1597079,AC120486.12;RT1-M1-1-ps,unprocessed_pseudogene;pseudogene,rna_OG0142792,TRUE
MHCI,rat,20,2436238,2436513,-,MHC_I,ENSRNOG00000061923;RGD:1597079,AC120486.12;RT1-M1-1-ps,unprocessed_pseudogene;pseudogene,rna_OG0142792,TRUE
MHCI,rat,20,2436828,2437019,-,MHC_I,ENSRNOG00000061923;RGD:1597079,AC120486.12;RT1-M1-1-ps,unprocessed_pseudogene;pseudogene,rna_OG0142792,TRUE
MHCI,rat,20,2460387,2460578,+,MHC_I,ENSRNOG00000054348;102546590,AC120486.6;LOC102546590,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2460895,2461170,+,MHC_I,ENSRNOG00000054348;102546590,AC120486.6;LOC102546590,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2461719,2462024,+,IgC1_MHC_I_alpha3,ENSRNOG00000054348;102546590,AC120486.6;LOC102546590,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2474580,2474705,-,MHC_I,20_7:1,20_7:1,NA,NA,FALSE
MHCI,rat,20,2484477,2484668,+,MHC_I,ENSRNOG00000054295;414787,AC120486.5;RT1-M10-1,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2484973,2485251,+,MHC_I,ENSRNOG00000054295;414787,AC120486.5;RT1-M10-1,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2485694,2486062,+,IgC1_MHC_I_alpha3,ENSRNOG00000054295;414787,AC120486.5;RT1-M10-1,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,2541126,2541458,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000058238;RGD:1595736,AC120486.9;RT1-P2-ps1,processed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,2542816,2542893,-,MHC_I,ENSRNOG00000053315;RGD:1595736,AC120486.4;RT1-P2-ps1,processed_pseudogene;pseudogene,rna_OG0142773;aa_OG0000000,TRUE
MHCI,rat,20,2542895,2542978,-,MHC_I,ENSRNOG00000053315;RGD:1595736,AC120486.4;RT1-P2-ps1,processed_pseudogene;pseudogene,rna_OG0142773;aa_OG0000000,TRUE
MHCI,rat,20,2553381,2553509,-,MHC_I,20_8:1,20_8:1,NA,NA,FALSE
MHCI,rat,20,2582039,2582254,+,MHC_I,20_8:2,20_8:2,NA,NA,FALSE
MHCI,rat,20,2597548,2597799,+,MHC_I,20_8:3,20_8:3,NA,NA,FALSE
MHCI,rat,20,2600585,2600844,+,MHC_I,20_8:4,20_8:4,NA,NA,FALSE
MHCI,rat,20,2601883,2602122,+,MHC_I,20_8:4,20_8:4,NA,NA,FALSE
MHCI,rat,20,2623192,2623377,+,MHC_I,ENSRNOG00000048140;108353240,AABR07044322.1;LOC108353240,unprocessed_pseudogene;pseudogene,aa_OG0000000;rna_OG0041068,TRUE
MHCI,rat,20,2624067,2624252,-,MHC_I,ENSRNOG00000048140;108353240,AABR07044322.1;LOC108353240,NA,NA,FALSE
MHCI,rat,20,2624263,2624349,-,MHC_I,ENSRNOG00000048140;108353240,AABR07044322.1;LOC108353240,NA,NA,FALSE
MHCI,rat,20,2637458,2637814,+,IgC1_MHC_I_alpha3,ENSRNOG00000048140;108353240,AABR07044322.1;LOC108353240,unprocessed_pseudogene;pseudogene,aa_OG0000000;rna_OG0041068,TRUE
MHCI,rat,20,2705090,2705449,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000048951,LOC100364500,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2706391,2706666,-,MHC_I,ENSRNOG00000048951,LOC100364500,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2706779,2707108,-,MHC_I,ENSRNOG00000048951,LOC100364500,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,2950371,2950814,+,MHC_I,20_10:1,20_10:1,NA,NA,FALSE
MHCI,rat,20,2995930,2996082,+,MHC_I,20_10:2,20_10:2,NA,NA,FALSE
MHCI,rat,20,2998972,2999133,+,MHC_I,20_10:3,20_10:3,NA,NA,FALSE
MHCI,rat,20,3045169,3045300,+,MHC_I,20_10:4,20_10:4,NA,NA,FALSE
MHCI,rat,20,3062358,3062489,+,MHC_I,20_10:5,20_10:5,NA,NA,FALSE
MHCI,rat,20,3098275,3098919,+,MHC_I,20_10:6,20_10:6,NA,NA,FALSE
MHCI,rat,20,3098933,3098974,+,MHC_I,20_10:6,20_10:6,NA,NA,FALSE
MHCI,rat,20,3100487,3100600,+,MHC_I,20_10:6,20_10:6,NA,NA,FALSE
MHCI,rat,20,3100605,3100727,+,MHC_I,20_10:6,20_10:6,NA,NA,FALSE
MHCI,rat,20,3100867,3101138,+,MHC_I,20_10:6,20_10:6,NA,NA,FALSE
MHCI,rat,20,3104135,3104209,+,MHC_I,20_10:7,20_10:7,NA,NA,FALSE
MHCI,rat,20,3104211,3104288,+,MHC_I,20_10:7,20_10:7,NA,NA,FALSE
MHCI,rat,20,3113308,3113580,+,MHC_I,ENSRNOG00000062067,AABR07044361.1,processed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,3113702,3114019,+,MHC_I,ENSRNOG00000062067,AABR07044361.1,processed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,3119117,3119389,+,MHC_I,ENSRNOG00000030666;108348140,LOC108348140,processed_transcript;mRNA;misc_RNA,aa_OG0000000,TRUE
MHCI,rat,20,3119511,3119828,+,MHC_I,ENSRNOG00000030666;108348140,LOC108348140,processed_transcript;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,3121443,3121841,+,IgC1_MHC_I_alpha3,ENSRNOG00000030666;108348140,LOC108348140,processed_transcript;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,3126835,3127113,+,MHC_I,ENSRNOG00000062036,AABR07044362.7,processed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,3127296,3127571,+,MHC_I,ENSRNOG00000062036,AABR07044362.7,processed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,3129397,3129588,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000062036,AABR07044362.7,NA,NA,FALSE
MHCI,rat,20,3138670,3138942,+,MHC_I,ENSRNOG00000026051;499402,AABR07044362.1;RGD1562652,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,3139101,3139364,+,MHC_I,ENSRNOG00000026051;499402,AABR07044362.1;RGD1562652,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,3139920,3140209,+,IgC1_MHC_I_alpha3,ENSRNOG00000026051;499402,AABR07044362.1;RGD1562652,unprocessed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,3147186,3147512,+,MHC_I,ENSRNOG00000029386,RT1-N2,protein_coding,aa_OG0034587,TRUE
MHCI,rat,20,3147645,3147890,+,MHC_I,ENSRNOG00000029386,RT1-N2,protein_coding,aa_OG0034587,TRUE
MHCI,rat,20,3148584,3148916,+,IgC1_MHC_I_alpha3,ENSRNOG00000029386,RT1-N2,protein_coding,aa_OG0034587,TRUE
MHCI,rat,20,3156160,3156444,+,IgC1_MHC_I_alpha3,ENSRNOG00000029001,RT1-S2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3162024,3162356,+,IgC1_MHC_I_alpha3,ENSRNOG00000032664,AABR07044362.2,unprocessed_pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,3167641,3167979,+,MHC_I,ENSRNOG00000000795;RGD:1598370,RT1-N3,protein_coding,aa_OG0000000;rna_OG0051656,TRUE
MHCI,rat,20,3168127,3168372,+,MHC_I,ENSRNOG00000000795;RGD:1598370,RT1-N3,protein_coding,aa_OG0000000;rna_OG0051656,TRUE
MHCI,rat,20,3169059,3169391,+,IgC1_MHC_I_alpha3,ENSRNOG00000000795;RGD:1598370,RT1-N3,protein_coding,aa_OG0000000;rna_OG0051656,TRUE
MHCI,rat,20,3176420,3176692,+,MHC_I,ENSRNOG00000000777,RT1-S3,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3176935,3177219,+,MHC_I,ENSRNOG00000000777,RT1-S3,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3177724,3178068,+,IgC1_MHC_I_alpha3,ENSRNOG00000000777,RT1-S3,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3193632,3193889,+,MHC_I,ENSRNOG00000042905;360231,RT1-T24-4;LOC360231,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rat,20,3195285,3195557,+,MHC_I,ENSRNOG00000042905;360231,RT1-T24-4;LOC360231,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rat,20,3195851,3196138,+,IgC1_MHC_I_alpha3,ENSRNOG00000042905;360231,RT1-T24-4;LOC360231,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rat,20,3198921,3199061,+,IgC1_MHC_I_alpha3,20_12:1,20_12:1,NA,NA,FALSE
MHCI,rat,20,3230046,3230303,+,MHC_I,ENSRNOG00000045924;RGD:1624211,RT1-T24-3,nonsense_mediated_decay;protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3231727,3231999,+,MHC_I,ENSRNOG00000045924;RGD:1624211,RT1-T24-3,nonsense_mediated_decay;protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3232281,3232631,+,IgC1_MHC_I_alpha3,ENSRNOG00000045924;RGD:1624211,RT1-T24-3,nonsense_mediated_decay;protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3246733,3246990,+,MHC_I,ENSRNOG00000000787;RGD:1624211,AABR07044364.1;RT1-T24-3,protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3248334,3248606,+,MHC_I,ENSRNOG00000000787;RGD:1624211,AABR07044364.1;RT1-T24-3,protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3248886,3249212,+,IgC1_MHC_I_alpha3,ENSRNOG00000000787;RGD:1624211,AABR07044364.1;RT1-T24-3,protein_coding,aa_OG0000000;rna_OG0047325,TRUE
MHCI,rat,20,3253471,3253611,+,IgC1_MHC_I_alpha3,RGD:1624211,RT1-T24-3,protein_coding,rna_OG0047325,TRUE
MHCI,rat,20,3273515,3273787,+,MHC_I,ENSRNOG00000032596,RT1-T24-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3281199,3281471,+,MHC_I,ENSRNOG00000032596,RT1-T24-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3281770,3282105,+,IgC1_MHC_I_alpha3,ENSRNOG00000032596,RT1-T24-1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3791829,3792056,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000047706;ENSRNOG00000059770,LOC103690108;AABR07044383.1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3793006,3793269,-,MHC_I,ENSRNOG00000047706,LOC103690108,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3793374,3793709,-,MHC_I,ENSRNOG00000047706,LOC103690108,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3795262,3795537,-,MHC_I,ENSRNOG00000059770,AABR07044383.1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,3795719,3795991,-,MHC_I,ENSRNOG00000059770,AABR07044383.1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,4675451,4675765,-,IgC1_MHC_I_alpha3,ENSRNOG00000050998;ENSRNOG00000061639,AABR07044397.1;AABR07044404.1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,4676803,4677078,-,MHC_I,ENSRNOG00000050998;ENSRNOG00000061639;415073,AABR07044397.1;AABR07044404.1;RT1-CE6,protein_coding;ncRNA,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4677258,4677530,-,MHC_I,ENSRNOG00000061639;415073,AABR07044404.1;RT1-CE6,protein_coding;ncRNA,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4696421,4696777,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000031090,RT1-CE7,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,4697716,4697991,-,MHC_I,ENSRNOG00000031090,RT1-CE7,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4698171,4698437,-,MHC_I,ENSRNOG00000031090,RT1-CE7,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4772657,4772971,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000039744;414779,RT1-CE4;RT1-CE2,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,4773878,4774153,-,MHC_I,414779,RT1-CE2,mRNA,aa_OG0000000,TRUE
MHCI,rat,20,4774348,4774620,-,MHC_I,ENSRNOG00000031090;414779,RT1-CE7;RT1-CE2,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,4789884,4790240,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000050183;ENSRNOG00000039744;ENSRNOG00000061639,RT1-CE1;RT1-CE4;AABR07044404.1,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4791206,4791478,-,MHC_I,ENSRNOG00000050183;ENSRNOG00000039744;ENSRNOG00000061639,RT1-CE1;RT1-CE4;AABR07044404.1,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4791708,4791980,-,MHC_I,ENSRNOG00000050183;ENSRNOG00000061639,RT1-CE1;AABR07044404.1,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4894045,4894359,-,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000039744;ENSRNOG00000000723,RT1-CE4;RT1-CE5,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,4895303,4895578,-,MHC_I,ENSRNOG00000000723,RT1-CE5,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,4896267,4896545,-,MHC_I,ENSRNOG00000031090;ENSRNOG00000000723,RT1-CE7;RT1-CE5,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,4919232,4919588,-,IgC1_MHC_I_alpha3,ENSRNOG00000039744;RGD:1598231,RT1-CE4;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4920310,4920585,-,MHC_I,ENSRNOG00000039744;RGD:1598231,RT1-CE4;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4920792,4921064,-,MHC_I,ENSRNOG00000039744;RGD:1598231,RT1-CE4;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4932833,4933165,-,IgC1_MHC_I_alpha3,ENSRNOG00000031607;RGD:1598231,RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4934382,4934657,-,MHC_I,ENSRNOG00000031607;RGD:1598231,RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4934825,4935097,-,MHC_I,ENSRNOG00000039744;ENSRNOG00000031607;RGD:1598231,RT1-CE4;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4942514,4942786,-,MHC_I,ENSRNOG00000050183;RGD:1598231,RT1-CE1;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,4943016,4943288,-,MHC_I,ENSRNOG00000050183;RGD:1598231,RT1-CE1;RT1-CE3,protein_coding,aa_OG0000000;rna_OG0029844,TRUE
MHCI,rat,20,5347660,5348298,+,MHC_I,ENSRNOG00000062039;102546968,AABR07044420.2;LOC102546968,processed_pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,rat,20,5349378,5349548,+,IgC1_MHC_Ia_H-2Kb,ENSRNOG00000062039;102546968,AABR07044420.2;LOC102546968,NA,NA,FALSE
MHCI,rat,20,5351887,5352159,+,MHC_I,ENSRNOG00000038999;ENSRNOG00000061998;108353237,RT1-A1;AABR07044421.1;LOC108353237,protein_coding;unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,5352352,5352627,+,MHC_I,ENSRNOG00000061998;108353237,AABR07044421.1;LOC108353237,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,5353582,5353893,+,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000061998;108353237,AABR07044421.1;LOC108353237,unprocessed_pseudogene;pseudogene,aa_OG0000000,TRUE
MHCI,rat,20,5375280,5375615,+,MHC_I,ENSRNOG00000038999;ENSRNOG00000030712;RGD:1595923,RT1-A1;RT1-A2,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,5375731,5376006,+,MHC_I,ENSRNOG00000038999;ENSRNOG00000030712;RGD:1595923,RT1-A1;RT1-A2,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,5376956,5377270,+,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000030712;RGD:1595923,RT1-A2,protein_coding;retained_intron,aa_OG0000000,TRUE
MHCI,rat,20,5414769,5415035,+,MHC_I,ENSRNOG00000038999,RT1-A1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,5415220,5415495,+,MHC_I,ENSRNOG00000038999,RT1-A1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,5416432,5416746,+,IgC1_MHC_Ia_RT1-Aa,ENSRNOG00000038999,RT1-A1,protein_coding,aa_OG0000000,TRUE
MHCI,rat,20,6199028,6199231,-,IgC1_MHC_Ia_HLA-G,20_14:1,20_14:1,NA,NA,FALSE
MHCI,rat,KL568103.1,3932,4084,-,MHC_I,414790,RT1-CE13,mRNA,aa_OG0000000,TRUE
MHCI,rat,KL568103.1,4205,4552,-,MHC_I,414790,RT1-CE13,mRNA,aa_OG0000000,TRUE
MHCI,rat,KL568428.1,11159,11353,+,MHC_I,RGD:1594459,RT1-V2-ps1,pseudogene,rna_OG0028073,TRUE
MHCI,rat,KL568428.1,11358,11435,+,MHC_I,RGD:1594459,RT1-V2-ps1,pseudogene,rna_OG0028073,TRUE
MHCI,rat,KL568428.1,11626,11910,+,MHC_I,RGD:1594459,RT1-V2-ps1,pseudogene,rna_OG0028073,TRUE
MHCI,rat,KL568428.1,11915,12010,+,MHC_I,RGD:1594459,RT1-V2-ps1,pseudogene,rna_OG0028073,TRUE
MHCI,rat,KL568428.1,13162,13566,+,IgC1_MHC_I_alpha3,RGD:1594459,RT1-V2-ps1,pseudogene,rna_OG0028073,TRUE
MHCI,guinea.pig,DS562868.1,21062142,21062306,-,IgC1_MHC_Ia_HLA-G,DS562868.1_1:1,DS562868.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS562870.1,41406575,41406928,+,MHC_I,100733617,LOC100733617,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41407156,41407392,+,MHC_I,100733617,LOC100733617,NA,NA,FALSE
MHCI,guinea.pig,DS562870.1,41407949,41408260,+,IgC1_MHC_I_alpha3,100733617,LOC100733617,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41445835,41446104,+,MHC_I,ENSCPOG00000038111;100724118,NA;LOC100724118,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41446347,41446610,+,MHC_I,ENSCPOG00000038111;100724118,NA;LOC100724118,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41447156,41447485,+,IgC1_MHC_I_alpha3,ENSCPOG00000038111;100724118,NA;LOC100724118,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41526804,41527079,+,MHC_I,100724396,LOC100724396,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41527276,41527542,+,MHC_I,100724396,LOC100724396,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41528121,41528417,+,IgC1_MHC_I_alpha3,ENSCPOG00000038111;100724396,NA;LOC100724396,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41557597,41557872,+,MHC_I,ENSCPOG00000002689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41558074,41558340,+,MHC_I,ENSCPOG00000002689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41558896,41559219,+,IgC1_MHC_I_alpha3,ENSCPOG00000002689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41599129,41599374,+,MHC_I,100734176,LOC100734176,pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41599704,41599951,+,MHC_I,100734176,LOC100734176,pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562870.1,41600507,41600938,+,IgC1_MHC_I_alpha3,ENSCPOG00000038111;100734176,NA;LOC100734176,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS562893.1,8885477,8885569,+,IgC1_MHC_Ib_HLA-E,DS562893.1_1:1,DS562893.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS562893.1,8885477,8885569,+,IgC1_MHC_Ib_HLA-E,DS562893.1_1:1,DS562893.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS562945.1,281764,282075,+,MHC_I,DS562945.1_1:1,DS562945.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS563093.1,15559,15864,-,IgC1_MHC_I_alpha3,100735869,LOC100735869,pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,16423,17139,-,MHC_I,100735869,LOC100735869,pseudogene,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,68489,68806,-,IgC1_MHC_I_alpha3,100736153,LOC100736153,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,69362,69616,-,MHC_I,100736153,LOC100736153,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,69832,70146,-,MHC_I,100736153,LOC100736153,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,155926,156123,+,MHC_I,100712777,LOC100712777,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,156447,156710,+,MHC_I,100712777,LOC100712777,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,157265,157609,+,IgC1_MHC_I_alpha3,100712777,LOC100712777,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,183840,184115,+,MHC_I,ENSCPOG00000002330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,184365,184628,+,MHC_I,ENSCPOG00000002330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,185157,185462,+,IgC1_MHC_I_alpha3,ENSCPOG00000002330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,229026,229301,+,MHC_I,106025018,LOC106025018,mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,229427,229747,+,MHC_I,ENSCPOG00000002330,NA,NA,NA,FALSE
MHCI,guinea.pig,DS563093.1,230301,230624,+,IgC1_MHC_I_alpha3,ENSCPOG00000002330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,266661,266924,-,IgC1_MHC_I_alpha3,DS563093.1_2:1,DS563093.1_2:1,NA,NA,FALSE
MHCI,guinea.pig,DS563093.1,330685,330780,-,IgC1_MHC_I_alpha3,ENSCPOG00000007659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,342463,342741,-,IgC1_MHC_I_alpha3,ENSCPOG00000007659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,343310,343573,-,MHC_I,ENSCPOG00000007659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563093.1,343825,344100,-,MHC_I,ENSCPOG00000007659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,214686,214997,-,IgC1_MHC_I_alpha3,DS563169.1_1:1,DS563169.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS563169.1,215521,215787,-,MHC_I,DS563169.1_1:1,DS563169.1_1:1,NA,NA,FALSE
MHCI,guinea.pig,DS563169.1,230138,230416,-,IgC1_MHC_I_alpha3,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,231376,231651,-,MHC_I,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,232234,232509,-,MHC_I,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,260233,260565,-,IgC1_MHC_I_alpha3,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,261091,261357,-,MHC_I,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,261525,261824,-,MHC_I,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,293028,293294,-,MHC_I,ENSCPOG00000030673,NA,NA,NA,FALSE
MHCI,guinea.pig,DS563169.1,293470,293745,-,MHC_I,ENSCPOG00000030673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,374266,374472,-,MHC_I,DS563169.1_3:1,DS563169.1_3:1,NA,NA,FALSE
MHCI,guinea.pig,DS563169.1,410255,410566,-,IgC1_MHC_I_alpha3,ENSCPOG00000001300;100723960,NA;LOC100723960,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,411115,411381,-,MHC_I,ENSCPOG00000001300;100723960,NA;LOC100723960,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,guinea.pig,DS563169.1,411549,411824,-,MHC_I,ENSCPOG00000001300;100723960,NA;LOC100723960,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,nmr,JH602067.1,24680233,24680508,+,MHC_I,ENSHGLG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,nmr,JH602067.1,24680701,24680976,+,MHC_I,ENSHGLG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,nmr,JH602067.1,24681438,24681821,+,IgC1_MHC_I_alpha3,ENSHGLG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,nmr,JH602067.1,24729533,24729808,-,MHC_I,101721938,LOC101721938,mRNA,aa_OG0000000,TRUE
MHCI,nmr,JH602067.1,25121559,25122032,-,IgC1_MHC_I_alpha3,JH602067.1_2:1,JH602067.1_2:1,NA,NA,FALSE
MHCI,nmr,JH602067.1,25172365,25172673,-,IgC1_MHC_I_alpha3,JH602067.1_2:2,JH602067.1_2:2,NA,NA,FALSE
MHCI,nmr,JH602067.1,25208309,25208552,-,IgC1_MHC_I_alpha3,JH602067.1_2:3,JH602067.1_2:3,NA,NA,FALSE
MHCI,nmr,JH602067.1,25372038,25372213,-,IgC1_MHC_I_alpha3,JH602067.1_2:4,JH602067.1_2:4,NA,NA,FALSE
MHCI,nmr,JH602118.1,4199197,4199547,+,IgC1_MHC_Ia_HLA-B,JH602118.1_1:1,JH602118.1_1:1,NA,NA,FALSE
MHCI,chinchilla,JH721897.1,63236,63409,-,IgC1_MHC_I_alpha3,102008978,LOC102008978,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,379405,379665,+,IgC1_MHC_I_alpha3,102003190,LOC102003190,mRNA,aa_OG0022749,TRUE
MHCI,chinchilla,JH722043.1,522482,522721,+,MHC_I,ENSCLAG00000011335;102003821,NA;LOC102003821,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,523784,524080,+,IgC1_MHC_I_alpha3,ENSCLAG00000011335;102003821,NA;LOC102003821,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,538292,538567,+,MHC_I,ENSCLAG00000017247,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,551291,551566,+,MHC_I,ENSCLAG00000017247,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,552096,552431,+,IgC1_MHC_I_alpha3,ENSCLAG00000017247,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,1045794,1046054,-,IgC1_MHC_Ib_HLA-Cw3-4,JH722043.1_1:1,JH722043.1_1:1,NA,NA,FALSE
MHCI,chinchilla,JH722043.1,1052132,1052404,-,IgC1_MHC_I_alpha3,JH722043.1_1:2,JH722043.1_1:2,NA,NA,FALSE
MHCI,chinchilla,JH722043.1,1079337,1079576,-,MHC_I,102026373,LOC102026373,mRNA,aa_OG0000000,TRUE
MHCI,chinchilla,JH722043.1,1136390,1136719,-,IgC1_MHC_I_alpha3,102006726,LOC102006726,mRNA,aa_OG0000000,TRUE
MHCI,chinchilla,JH722172.1,7705,8025,-,IgC1_MHC_I_alpha3,ENSCLAG00000000475,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinchilla,JH722172.1,8562,8825,-,MHC_I,ENSCLAG00000000475,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinchilla,JH722172.1,9056,9379,-,MHC_I,ENSCLAG00000000475,NA,protein_coding,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,346327,346611,+,MHC_I,ENSDORG00000019730;105996958,NA;LOC105996958,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,346920,347180,+,MHC_I,ENSDORG00000019730;105996958,NA;LOC105996958,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,348229,348510,+,IgC1_MHC_I_alpha3,ENSDORG00000019730;105996958,NA;LOC105996958,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,356556,356813,+,MHC_I,ENSDORG00000019756;105996971,NA;LOC105996971,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,357881,358138,+,MHC_I,ENSDORG00000019756;105996964,NA;LOC105996964,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,358456,358716,+,MHC_I,ENSDORG00000019756;105996964,NA;LOC105996964,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,359644,360015,+,IgC1_MHC_I_alpha3,ENSDORG00000019756,NA,protein_coding,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,849457,849708,-,IgC1_MHC_I_alpha3,KN672484.1_1:1,KN672484.1_1:1,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,877949,878242,-,IgC1_MHC_I_alpha3,KN672484.1_1:2,KN672484.1_1:2,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,878899,878976,-,MHC_I,KN672484.1_1:2,KN672484.1_1:2,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,905881,906168,-,IgC1_MHC_I_alpha3,105996957,LOC105996957,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,906661,906927,-,MHC_I,105996957,LOC105996957,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,910403,910741,-,MHC_I,105996957,LOC105996957,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,915598,915888,+,MHC_I,105996871,LOC105996871,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,916269,916445,+,MHC_I,105996871,LOC105996871,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,917341,917517,+,MHC_I,105996871,LOC105996871,NA,NA,FALSE
MHCI,kangaroo.rat,KN672484.1,917926,918321,+,IgC1_MHC_I_alpha3,105996871,LOC105996871,pseudogene,rna_OG0089032,TRUE
MHCI,kangaroo.rat,KN672484.1,926056,926229,+,MHC_I,105996871,LOC105996871,pseudogene,rna_OG0089032,TRUE
MHCI,kangaroo.rat,KN672484.1,926997,927290,+,IgC1_MHC_I_alpha3,105996871,LOC105996871,pseudogene,rna_OG0089032,TRUE
MHCI,kangaroo.rat,KN672484.1,930101,930373,+,MHC_I,ENSDORG00000015458;105996972,NA;LOC105996972,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,931103,931396,+,IgC1_MHC_I_alpha3,ENSDORG00000015458;105996972,NA;LOC105996972,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,1024759,1025031,+,MHC_I,105996874,LOC105996874,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,1025689,1025970,+,IgC1_MHC_I_alpha3,105996874,LOC105996874,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672484.1,1115207,1115371,-,MHC_I,KN672484.1_3:1,KN672484.1_3:1,NA,NA,FALSE
MHCI,kangaroo.rat,KN672640.1,3774,3950,-,MHC_I,106001397,LOC106001397,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672640.1,4164,4439,-,MHC_I,106001397,LOC106001397,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672640.1,34567,34944,-,IgC1_MHC_I_alpha3,ENSDORG00000006035;106001400,NA;LOC106001400,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672640.1,36720,36944,-,MHC_I,ENSDORG00000006035;106001400,NA;LOC106001400,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672640.1,37166,37432,-,MHC_I,ENSDORG00000006035;106001400,NA;LOC106001400,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672752.1,6319,6501,+,MHC_I,106001777,LOC106001777,mRNA,aa_OG0019859,TRUE
MHCI,kangaroo.rat,KN672780.1,41385,41660,-,MHC_I,106001801,LOC106001801,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672780.1,41990,42172,-,MHC_I,106001802,LOC106001802,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672780.1,61931,62206,-,MHC_I,106001802,LOC106001802,mRNA,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672856.1,11857,12156,+,IgC1_MHC_I_alpha3,106001861,LOC106001861,pseudogene,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN672979.1,6917,7189,+,MHC_I,106001884,LOC106001884,pseudogene,aa_OG0000000,TRUE
MHCI,kangaroo.rat,KN673225.1,12191,12379,+,MHC_I,KN673225.1_1:1,KN673225.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,AYHN01196249.1,1631,1955,+,IgC1_MHC_I_alpha3,AYHN01196249.1_1:1,AYHN01196249.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,AYHN01197334.1,1617,1830,+,IgC1_MHC_I_alpha3,AYHN01197334.1_1:1,AYHN01197334.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,AYHN01197923.1,1249,1611,+,IgC1_MHC_I_alpha3,102924859,LOC102924859,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,AYHN01197923.1,7877,8011,+,MHC_I,AYHN01197923.1_1:1,AYHN01197923.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,AYHN01197923.1,10873,11144,+,IgC1_MHC_I_alpha3,AYHN01197923.1_1:2,AYHN01197923.1_1:2,NA,NA,FALSE
MHCI,deer.mouse,AYHN01197923.1,14754,15026,+,MHC_I,102925173,LOC102925173,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,AYHN01197923.1,15208,15474,+,MHC_I,102925173,LOC102925173,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,AYHN01197923.1,18259,18549,+,IgC1_MHC_I_alpha3,AYHN01197923.1_2:1,AYHN01197923.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,AYHN01198106.1,567,842,-,MHC_I,102926614,LOC102926614,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,AYHN01198106.1,1103,1372,-,MHC_I,102926614,LOC102926614,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI615507.1,2283951,2284265,+,IgC1_MHC_I_alpha3,KI615507.1_1:1,KI615507.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI615523.1,5483653,5483742,-,IgC1_MHC_I_alpha3,107402040,LOC107402040,ncRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,10342,10674,-,IgC1_MHC_I_alpha3,ENSPEMG00000008513,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,12175,12450,-,MHC_I,ENSPEMG00000008513,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,12666,12842,-,MHC_I,ENSPEMG00000008513,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,13214,13378,-,MHC_I,ENSPEMG00000008513,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,98273,98632,-,IgC1_MHC_I_alpha3,ENSPEMG00000018172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,100079,100393,-,MHC_I,ENSPEMG00000018172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,100596,100865,-,MHC_I,ENSPEMG00000018172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,142987,143343,-,IgC1_MHC_I_alpha3,ENSPEMG00000011163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,144799,145074,-,MHC_I,ENSPEMG00000011163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616187.1,145245,145517,-,MHC_I,ENSPEMG00000011163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,127873,128178,+,MHC_I,ENSPEMG00000023578;102926083,H2-M5;LOC102926083,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,128325,128597,+,MHC_I,ENSPEMG00000023578;102926083,H2-M5;LOC102926083,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,129190,129474,+,IgC1_MHC_I_alpha3,ENSPEMG00000023578;102926083,H2-M5;LOC102926083,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,137304,137570,+,MHC_I,102903783,LOC102903783,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,137801,138070,+,MHC_I,102903783,LOC102903783,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,140778,141107,+,IgC1_MHC_I_alpha3,ENSPEMG00000000605;102903783,NA;LOC102903783,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,156659,156931,+,MHC_I,102904415,LOC102904415,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,157133,157399,+,MHC_I,102904415,LOC102904415,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,158533,158838,+,IgC1_MHC_I_alpha3,102904415,LOC102904415,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,186019,186309,+,IgC1_MHC_I_alpha3,102904732,LOC102904732,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,210621,210890,+,MHC_I,102905350,LOC102905350,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,211072,211365,+,MHC_I,102905350,LOC102905350,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,211944,212249,+,IgC1_MHC_I_alpha3,102905350,LOC102905350,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,226894,227595,+,MHC_I,102926386,LOC102926386,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,228184,228465,+,IgC1_MHC_I_alpha3,102926386,LOC102926386,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,259918,260220,+,MHC_I,102905666,LOC102905666,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,260378,260641,+,MHC_I,102905666,LOC102905666,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,261287,261571,+,IgC1_MHC_I_alpha3,102905666,LOC102905666,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,280551,280817,+,MHC_I,102905976,LOC102905976,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,281045,281359,+,MHC_I,102905976,LOC102905976,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,281717,282031,+,IgC1_MHC_I_alpha3,102905976,LOC102905976,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,490381,490662,+,MHC_I,KI616306.1_1:1,KI616306.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616306.1,490911,491192,+,MHC_I,KI616306.1_1:1,KI616306.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616306.1,491734,492018,+,IgC1_MHC_I_alpha3,KI616306.1_1:1,KI616306.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616306.1,514712,514984,+,MHC_I,ENSPEMG00000023748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,515241,515522,+,MHC_I,ENSPEMG00000023748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,516055,516393,+,IgC1_MHC_I_alpha3,ENSPEMG00000023748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616306.1,535004,535348,+,MHC_I,KI616306.1_2:1,KI616306.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,KI616306.1,535536,535814,+,MHC_I,KI616306.1_2:1,KI616306.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,KI616405.1,514,795,+,IgC1_MHC_I_alpha3,102915969,LOC102915969,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,14883,15212,-,IgC1_MHC_I_alpha3,ENSPEMG00000019523;107399351;102921931,NA;LOC107399351;LOC102921931,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,16705,16980,-,MHC_I,ENSPEMG00000019523;107399351;102921931,NA;LOC107399351;LOC102921931,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,17196,17468,-,MHC_I,ENSPEMG00000019523;107399351;102921931,NA;LOC107399351;LOC102921931,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,77738,78019,-,IgC1_MHC_I_alpha3,ENSPEMG00000019472;107399351,NA;LOC107399351,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,79551,79826,-,MHC_I,ENSPEMG00000019472;107399351,NA;LOC107399351,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,80010,80219,-,MHC_I,ENSPEMG00000019472;107399351,NA;LOC107399351,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,116669,117022,-,IgC1_MHC_I_alpha3,ENSPEMG00000020023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,118475,118774,-,MHC_I,ENSPEMG00000020023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616476.1,119006,119278,-,MHC_I,ENSPEMG00000020023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,3917,4102,+,MHC_I,102904110,LOC102904110,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,4105,4194,+,MHC_I,102904110,LOC102904110,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,4917,5189,+,MHC_I,102904110,LOC102904110,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,5505,5771,+,MHC_I,102904110,LOC102904110,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,15130,15405,+,MHC_I,102904110,LOC102904110,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,16289,16561,+,MHC_I,ENSPEMG00000015795,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,16855,17124,+,MHC_I,ENSPEMG00000015795,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,17618,17989,+,IgC1_MHC_I_alpha3,ENSPEMG00000015795,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,38721,38987,+,MHC_I,ENSPEMG00000017205,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,39944,40225,+,MHC_I,ENSPEMG00000017205,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616589.1,40458,40793,+,IgC1_MHC_I_alpha3,ENSPEMG00000017205,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,14977,15321,-,IgC1_MHC_I_alpha3,102917115,LOC102917115,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,16757,17074,-,MHC_I,102917115,LOC102917115,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,17249,17515,-,MHC_I,102917115,LOC102917115,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,53169,53474,-,IgC1_MHC_I_alpha3,ENSPEMG00000017235;102917419,NA;LOC102917419,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,54780,55053,-,MHC_I,ENSPEMG00000017235;102917419,NA;LOC102917419,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616603.1,55292,55564,-,MHC_I,ENSPEMG00000017235;102917419,NA;LOC102917419,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,1037,1234,+,IgC1_MHC_Ia_HLA-B,KI616796.1_1:1,KI616796.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,2824,3144,-,IgC1_MHC_Ib_T10_T22_like,KI616796.1_1:2,KI616796.1_1:2,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,11748,12020,+,MHC_I,102916931,LOC102916931,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,12289,12570,+,MHC_I,102916931,LOC102916931,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,13058,13393,+,IgC1_MHC_I_alpha3,102916931,LOC102916931,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,26608,26853,+,IgC1_MHC_Ia_HLA-B,KI616796.1_2:1,KI616796.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,28352,28675,-,IgC1_MHC_Ib_T10_T22_like,KI616796.1_2:1,KI616796.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,36083,36364,+,MHC_I,102917240,LOC102917240,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,36610,36891,+,MHC_I,102917240,LOC102917240,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,37408,37704,+,IgC1_MHC_I_alpha3,102917240,LOC102917240,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,52239,52545,-,IgC1_MHC_1b_Qa-1b,KI616796.1_3:1,KI616796.1_3:1,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,59862,60134,+,MHC_I,KI616796.1_3:2,KI616796.1_3:2,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,61212,61490,+,IgC1_MHC_I_alpha3,KI616796.1_3:2,KI616796.1_3:2,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,89629,89922,-,IgC1_MHC_I_alpha3,102917540,LOC102917540,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,90457,90744,-,MHC_I,102917540,LOC102917540,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,90996,91268,-,MHC_I,102917540,LOC102917540,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,147125,147289,+,MHC_I,KI616796.1_4:1,KI616796.1_4:1,NA,NA,FALSE
MHCI,deer.mouse,KI616796.1,155829,156125,-,IgC1_MHC_I_alpha3,102917852,LOC102917852,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,156675,156956,-,MHC_I,102917852,LOC102917852,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616796.1,157287,157484,-,MHC_I,102917852,LOC102917852,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,10427,10741,-,IgC1_MHC_I_alpha3,KI616814.1_1:1,KI616814.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,11248,11529,-,MHC_I,KI616814.1_1:1,KI616814.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,11787,12059,-,MHC_I,KI616814.1_1:1,KI616814.1_1:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,19718,19924,+,IgC1_MHC_I_alpha3,KI616814.1_1:2,KI616814.1_1:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,24890,25137,-,IgC1_MHC_I_alpha3,KI616814.1_1:3,KI616814.1_1:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,54634,54825,+,MHC_I,107400203,LOC107400203,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,55214,55471,+,MHC_I,107400203,LOC107400203,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,55976,56317,+,IgC1_MHC_I_alpha3,107400203,LOC107400203,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,59571,59756,+,IgC1_MHC_I_alpha3,KI616814.1_2:1,KI616814.1_2:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,75455,75598,-,IgC1_MHC_I_alpha3,102909072,LOC102909072,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,75601,75732,-,IgC1_MHC_I_alpha3,102909072,LOC102909072,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,76215,76601,-,MHC_I,102909072,LOC102909072,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,76814,77077,-,MHC_I,102909072,LOC102909072,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,93004,93279,+,MHC_I,102909384;ENSPEMG00000014299,LOC102909384;NA,pseudogene;protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,93535,93816,+,MHC_I,102909384;ENSPEMG00000014299,LOC102909384;NA,pseudogene;protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,94348,94641,+,IgC1_MHC_I_alpha3,102909384;ENSPEMG00000014299,LOC102909384;NA,pseudogene;protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,98490,98675,+,IgC1_MHC_I_alpha3,KI616814.1_3:1,KI616814.1_3:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,103286,103672,-,IgC1_MHC_I_alpha3,KI616814.1_3:2,KI616814.1_3:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,118130,118423,-,IgC1_MHC_I_alpha3,102909695,LOC102909695,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,118961,119242,-,MHC_I,102909695,LOC102909695,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,119495,119776,-,MHC_I,102909695,LOC102909695,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,130200,130471,-,IgC1_MHC_I_alpha3,102910014,LOC102910014,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,131062,131295,-,MHC_I,102910014,LOC102910014,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,131596,131724,-,MHC_I,102910014,LOC102910014,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,132284,132418,-,MHC_I,102910014,LOC102910014,pseudogene,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,141084,141248,+,MHC_I,KI616814.1_4:1,KI616814.1_4:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,141921,142112,+,IgC1_MHC_Ia_HLA-F,KI616814.1_4:1,KI616814.1_4:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,149301,149579,+,MHC_I,ENSPEMG00000015384,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,149784,150059,+,MHC_I,ENSPEMG00000015384,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,150611,150892,+,IgC1_MHC_I_alpha3,ENSPEMG00000015384,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,155577,155846,+,MHC_I,KI616814.1_5:1,KI616814.1_5:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,156076,156342,+,MHC_I,KI616814.1_5:1,KI616814.1_5:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,156862,157185,+,IgC1_MHC_I_alpha3,KI616814.1_5:1,KI616814.1_5:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,207369,207659,+,MHC_I,KI616814.1_5:2,KI616814.1_5:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,207824,208089,+,MHC_I,KI616814.1_5:2,KI616814.1_5:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,211022,211294,+,IgC1_MHC_I_alpha3,KI616814.1_5:3,KI616814.1_5:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,214826,215098,+,MHC_I,KI616814.1_5:4,KI616814.1_5:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,215280,215546,+,MHC_I,KI616814.1_5:4,KI616814.1_5:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,218520,218849,+,IgC1_MHC_I_alpha3,KI616814.1_5:5,KI616814.1_5:5,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,223784,224059,+,MHC_I,KI616814.1_5:6,KI616814.1_5:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,224294,224335,+,MHC_I,KI616814.1_5:6,KI616814.1_5:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,224338,224400,+,MHC_I,KI616814.1_5:6,KI616814.1_5:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,226805,227128,+,IgC1_MHC_I_alpha3,KI616814.1_5:7,KI616814.1_5:7,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,231613,231861,+,MHC_I,ENSPEMG00000000235,NA,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,232594,232866,+,MHC_I,ENSPEMG00000000235,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,233119,233388,+,MHC_I,ENSPEMG00000000235,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,233890,234249,+,IgC1_MHC_I_alpha3,ENSPEMG00000000235,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,240748,240813,+,MHC_I,KI616814.1_6:1,KI616814.1_6:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,240831,241013,+,MHC_I,KI616814.1_6:1,KI616814.1_6:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,241238,241267,+,MHC_I,KI616814.1_6:1,KI616814.1_6:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,241273,241347,+,MHC_I,KI616814.1_6:1,KI616814.1_6:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,243339,243617,+,IgC1_MHC_I_alpha3,KI616814.1_6:2,KI616814.1_6:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,248842,249156,+,MHC_I,ENSPEMG00000013450,NA,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,249889,250161,+,MHC_I,ENSPEMG00000013450,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,250414,250683,+,MHC_I,ENSPEMG00000013450,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,251187,251519,+,IgC1_MHC_I_alpha3,ENSPEMG00000013450,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,259921,260100,+,MHC_I,KI616814.1_7:1,KI616814.1_7:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,260109,260168,+,MHC_I,KI616814.1_7:1,KI616814.1_7:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,260393,260503,+,MHC_I,KI616814.1_7:1,KI616814.1_7:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,262879,263157,+,IgC1_MHC_I_alpha3,KI616814.1_7:2,KI616814.1_7:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,264703,264735,+,MHC_I,KI616814.1_7:3,KI616814.1_7:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,264738,265352,+,MHC_I,KI616814.1_7:3,KI616814.1_7:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,268273,268562,+,IgC1_MHC_I_alpha3,KI616814.1_7:4,KI616814.1_7:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,272546,272837,+,MHC_I,KI616814.1_7:5,KI616814.1_7:5,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,273153,273466,+,IgC1_MHC_I_alpha3,KI616814.1_7:5,KI616814.1_7:5,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,278777,279025,+,MHC_I,ENSPEMG00000010749,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,279757,280080,+,MHC_I,ENSPEMG00000010749,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,280285,280554,+,MHC_I,ENSPEMG00000010749,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,281058,281420,+,IgC1_MHC_I_alpha3,ENSPEMG00000010749,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616814.1,288887,289054,+,MHC_I,KI616814.1_8:1,KI616814.1_8:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,290262,290551,+,IgC1_MHC_I_alpha3,KI616814.1_8:1,KI616814.1_8:1,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,294559,294831,+,MHC_I,KI616814.1_8:2,KI616814.1_8:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,295170,295486,+,IgC1_MHC_I_alpha3,KI616814.1_8:2,KI616814.1_8:2,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,305503,305733,+,MHC_I,KI616814.1_8:3,KI616814.1_8:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,305789,306126,+,MHC_I,KI616814.1_8:3,KI616814.1_8:3,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,307677,307978,+,IgC1_MHC_I_alpha3,KI616814.1_8:4,KI616814.1_8:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,309293,309571,+,MHC_I,KI616814.1_8:4,KI616814.1_8:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,309810,310124,+,MHC_I,KI616814.1_8:4,KI616814.1_8:4,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,313027,313329,+,IgC1_MHC_I_alpha3,KI616814.1_8:5,KI616814.1_8:5,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,322954,323229,+,MHC_I,KI616814.1_8:6,KI616814.1_8:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,323967,324239,+,MHC_I,KI616814.1_8:6,KI616814.1_8:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,324555,324824,+,MHC_I,KI616814.1_8:6,KI616814.1_8:6,NA,NA,FALSE
MHCI,deer.mouse,KI616814.1,325328,325663,+,IgC1_MHC_I_alpha3,KI616814.1_8:6,KI616814.1_8:6,NA,NA,FALSE
MHCI,deer.mouse,KI616961.1,12554,12871,-,IgC1_MHC_I_alpha3,ENSPEMG00000002528,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616961.1,14374,14649,-,MHC_I,ENSPEMG00000002528,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616961.1,14861,15133,-,MHC_I,ENSPEMG00000002528,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616961.1,65139,65498,-,IgC1_MHC_I_alpha3,ENSPEMG00000013573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616961.1,67042,67317,-,MHC_I,ENSPEMG00000013573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI616961.1,67520,67792,-,MHC_I,ENSPEMG00000013573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617023.1,3959,4228,+,MHC_I,ENSPEMG00000024253,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617023.1,4430,4705,+,MHC_I,ENSPEMG00000024253,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617023.1,6228,6560,+,IgC1_MHC_I_alpha3,ENSPEMG00000024253,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617026.1,55463,55735,+,MHC_I,ENSPEMG00000006978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617026.1,55980,56252,+,MHC_I,ENSPEMG00000006978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617026.1,57788,58141,+,IgC1_MHC_I_alpha3,ENSPEMG00000006978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617239.1,14787,15059,+,MHC_I,102922156,LOC102922156,misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617239.1,15262,15579,+,MHC_I,102922156,LOC102922156,misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617239.1,17031,17384,+,IgC1_MHC_I_alpha3,102922156,LOC102922156,misc_RNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617240.1,5106,5378,+,MHC_I,ENSPEMG00000004449,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617240.1,5604,5879,+,MHC_I,ENSPEMG00000004449,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617240.1,7206,7535,+,IgC1_MHC_I_alpha3,ENSPEMG00000004449,NA,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617376.1,240566,240871,-,IgC1_MHC_I_alpha3,ENSPEMG00000008082,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617376.1,241816,242082,-,MHC_I,ENSPEMG00000008082,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617376.1,242264,242563,-,MHC_I,ENSPEMG00000008082,H2-M3,protein_coding,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617376.1,265334,265666,-,IgC1_MHC_I_alpha3,ENSPEMG00000011407;102921945,H2-M2;LOC102921945,protein_coding;pseudogene,aa_OG0000000;aa_OG0000013,TRUE
MHCI,deer.mouse,KI617376.1,266344,266592,-,MHC_I,ENSPEMG00000011407;102921945,H2-M2;LOC102921945,protein_coding;pseudogene,aa_OG0000000;aa_OG0000013,TRUE
MHCI,deer.mouse,KI617376.1,266856,267122,-,MHC_I,ENSPEMG00000011407;102921945,H2-M2;LOC102921945,protein_coding;pseudogene,aa_OG0000000;aa_OG0000013,TRUE
MHCI,deer.mouse,KI617782.1,29218,29577,-,IgC1_MHC_I_alpha3,102914843,LOC102914843,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617782.1,31207,31566,-,IgC1_MHC_I_alpha3,102915160,LOC102915160,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617782.1,33044,33319,-,MHC_I,102915160,LOC102915160,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617782.1,33504,33773,-,MHC_I,102915160,LOC102915160,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617838.1,3942,4214,+,MHC_I,102921948,LOC102921948,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617838.1,4381,4656,+,MHC_I,102921948,LOC102921948,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI617838.1,6162,6515,+,IgC1_MHC_I_alpha3,102921948,LOC102921948,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI618767.1,4078,4437,-,IgC1_MHC_I_alpha3,102923316,LOC102923316,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI618767.1,5925,6200,-,MHC_I,102923316,LOC102923316,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI618767.1,6374,6640,-,MHC_I,102923316,LOC102923316,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI621205.1,7669,7941,+,MHC_I,102928225,LOC102928225,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI621205.1,8152,8427,+,MHC_I,102928225,LOC102928225,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI623954.1,1262,1537,-,MHC_I,102906108,LOC102906108,mRNA,aa_OG0000000,TRUE
MHCI,deer.mouse,KI623954.1,1812,2084,-,MHC_I,102906108,LOC102906108,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000457.1,39888,40179,-,IgC1_MHC_I_alpha3,JH000457.1_1:1,JH000457.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000457.1,40182,40352,-,MHC_I,JH000457.1_1:1,JH000457.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000457.1,40373,40420,-,MHC_I,JH000457.1_1:1,JH000457.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,2459,2881,+,MHC_I,ENSCGRG00000017934;100753528,NA;LOC100753528,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,3058,3333,+,MHC_I,ENSCGRG00000017934;100753528,NA;LOC100753528,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,4802,4996,+,IgC1_MHC_I_alpha3,100753528,LOC100753528,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,10539,10817,+,MHC_I,JH000617.1_1:1,JH000617.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,10986,11423,+,MHC_I,JH000617.1_1:1,JH000617.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,14801,15190,+,IgC1_MHC_I_alpha3,JH000617.1_1:2,JH000617.1_1:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,22144,22416,+,IgC1_MHC_I_alpha3,JH000617.1_1:3,JH000617.1_1:3,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,28119,28286,+,MHC_I,ENSCGRG00000013218,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,28297,28401,+,MHC_I,ENSCGRG00000013218,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,28678,28947,+,MHC_I,ENSCGRG00000013218,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,32032,32373,+,IgC1_MHC_I_alpha3,ENSCGRG00000013218;100753528,NA;LOC100753528,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,35201,35524,+,IgC1_MHC_I_alpha3,100753528,LOC100753528,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,45333,45449,+,IgC1_MHC_Ia_H2Db_H2Ld,JH000617.1_2:1,JH000617.1_2:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,45464,45820,+,IgC1_MHC_I_alpha3,JH000617.1_2:1,JH000617.1_2:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,514523,514915,-,IgC1_MHC_I_alpha3,ENSCGRG00000014359,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,515188,515469,-,MHC_I,ENSCGRG00000014359,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,516815,517081,-,MHC_I,ENSCGRG00000014359,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,547391,547774,-,IgC1_MHC_I_alpha3,ENSCGRG00000015633,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,548282,548545,-,MHC_I,ENSCGRG00000015633,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,548795,549118,-,MHC_I,ENSCGRG00000015633,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,553900,554208,-,IgC1_MHC_I_alpha3,ENSCGRG00000013605,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,554894,555172,-,MHC_I,ENSCGRG00000013605,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,555312,555584,-,MHC_I,ENSCGRG00000013605,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,561086,561355,-,MHC_I,JH000617.1_3:1,JH000617.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,561522,561802,-,MHC_I,JH000617.1_3:1,JH000617.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000617.1,570047,570439,-,IgC1_MHC_I_alpha3,ENSCGRG00000016711;113830651,NA;LOC113830651,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,571887,572134,-,MHC_I,ENSCGRG00000016711;113830651,NA;LOC113830651,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,572327,572569,-,MHC_I,ENSCGRG00000016711;113830651,NA;LOC113830651,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,577821,578060,+,MHC_I,100758481,LOC100758481,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,579416,579745,+,IgC1_MHC_I_alpha3,100758481,LOC100758481,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,613125,613436,-,IgC1_MHC_I_alpha3,103161513,LOC103161513,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,614821,614931,-,MHC_I,103161513,LOC103161513,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,673195,673284,-,IgC1_MHC_Ia_H-2Dd,113839331,LOC113839331,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000617.1,674676,674951,-,MHC_I,113839331,LOC113839331,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,27643,27909,+,MHC_I,ENSCGRG00000015418,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,28145,28441,+,MHC_I,ENSCGRG00000015418,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,29061,29405,+,IgC1_MHC_I_alpha3,ENSCGRG00000015418,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,40572,40871,+,MHC_I,100774402,LOC100774402,pseudogene,aa_OG0000013,TRUE
MHCI,chinese.hamster,JH000802.1,41019,41120,+,MHC_I,100774402,LOC100774402,pseudogene,aa_OG0000013,TRUE
MHCI,chinese.hamster,JH000802.1,41152,41232,+,MHC_I,100774402,LOC100774402,pseudogene,aa_OG0000013,TRUE
MHCI,chinese.hamster,JH000802.1,42183,42473,+,IgC1_MHC_I_alpha3,100774402,LOC100774402,pseudogene,aa_OG0000013,TRUE
MHCI,chinese.hamster,JH000802.1,267563,267853,+,MHC_I,ENSCGRG00000015438,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,268021,268578,+,MHC_I,ENSCGRG00000015438,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,268872,269159,+,IgC1_MHC_I_alpha3,ENSCGRG00000015438,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,275388,275657,+,MHC_I,ENSCGRG00000015642;100751667,NA;LOC100751667,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,275878,276222,+,MHC_I,100751667,LOC100751667,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,277920,278279,+,IgC1_MHC_I_alpha3,ENSCGRG00000015642;100751667,NA;LOC100751667,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,291441,291707,+,MHC_I,100771128,LOC100771128,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,291914,292180,+,MHC_I,100771128,LOC100771128,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,292718,293068,+,IgC1_MHC_I_alpha3,100771128,LOC100771128,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,301897,302169,+,MHC_I,100751953,LOC100751953,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,302208,302636,+,MHC_I,100751953,LOC100751953,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,303257,303565,+,IgC1_MHC_I_alpha3,100751953,LOC100751953,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,312716,312931,+,MHC_I,100752239,LOC100752239,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,313101,313400,+,MHC_I,100752239,LOC100752239,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,313988,314296,+,IgC1_MHC_I_alpha3,100752239,LOC100752239,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,332036,332278,+,MHC_I,100752535,LOC100752535,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,332492,332797,+,MHC_I,100752535,LOC100752535,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,333157,333522,+,IgC1_MHC_I_alpha3,100752535,LOC100752535,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,527565,527837,+,MHC_I,ENSCGRG00000015839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,528056,528325,+,MHC_I,ENSCGRG00000015839;113832472,NA;LOC113832472,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,528848,529225,+,IgC1_MHC_I_alpha3,ENSCGRG00000015839;113832472,NA;LOC113832472,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,536090,536482,-,IgC1_MHC_Ia_HLA-B,JH000802.1_2:1,JH000802.1_2:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,540976,541248,+,MHC_I,ENSCGRG00000015839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,550661,551068,-,IgC1_MHC_I_alpha3,JH000802.1_3:1,JH000802.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,551583,551864,-,MHC_I,JH000802.1_3:1,JH000802.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,552120,552392,-,MHC_I,JH000802.1_3:1,JH000802.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,564700,564956,-,IgC1_MHC_I_alpha3,JH000802.1_3:2,JH000802.1_3:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,574081,574319,-,IgC1_MHC_I_alpha3,JH000802.1_3:3,JH000802.1_3:3,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,579042,579191,+,MHC_I,100755775,LOC100755775,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,579554,579610,+,MHC_I,ENSCGRG00000015839;100755775,NA;LOC100755775,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,579625,579834,+,MHC_I,ENSCGRG00000015839;100755775,NA;LOC100755775,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,580341,580733,+,IgC1_MHC_I_alpha3,ENSCGRG00000015839;100755775,NA;LOC100755775,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,591429,591701,+,MHC_I,ENSCGRG00000015839;100772658,NA;LOC100772658,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,591956,592225,+,MHC_I,ENSCGRG00000015839;100772658,NA;LOC100772658,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,592767,593051,+,IgC1_MHC_I_alpha3,ENSCGRG00000015839;100772658,NA;LOC100772658,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,605234,605619,-,IgC1_MHC_I_alpha3,103162122,LOC103162122,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,606393,606578,-,MHC_I,103162122,LOC103162122,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,606590,606670,-,MHC_I,103162122,LOC103162122,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,606721,606759,-,MHC_I,103162122,LOC103162122,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,607065,607277,-,MHC_I,103162122,LOC103162122,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,615587,615769,-,MHC_I,JH000802.1_4:2,JH000802.1_4:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,617782,618006,+,MHC_I,JH000802.1_4:3,JH000802.1_4:3,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,621579,621635,+,MHC_I,JH000802.1_4:4,JH000802.1_4:4,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,621640,621786,+,MHC_I,JH000802.1_4:4,JH000802.1_4:4,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,627716,628039,-,IgC1_MHC_I_alpha3,ENSCGRG00000014258,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,628536,628817,-,MHC_I,ENSCGRG00000014258,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,629077,629349,-,MHC_I,ENSCGRG00000014258,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,631395,631598,+,MHC_I,JH000802.1_5:1,JH000802.1_5:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,651313,651600,-,IgC1_MHC_I_alpha3,100756947,LOC100756947,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,652083,652412,-,MHC_I,100756947,LOC100756947,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,652708,652980,-,MHC_I,100756947,LOC100756947,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,664160,664447,-,IgC1_MHC_I_alpha3,100757234,LOC100757234,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,664957,665271,-,MHC_I,100757234,LOC100757234,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,665528,665800,-,MHC_I,100757234,LOC100757234,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,669429,669820,+,IgC1_MHC_Ia_HLA-B,JH000802.1_7:1,JH000802.1_7:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,672145,672330,-,MHC_I,JH000802.1_7:2,JH000802.1_7:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,672719,672925,-,MHC_I,JH000802.1_7:2,JH000802.1_7:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,682991,683263,+,MHC_I,100757524,LOC100757524,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,683514,683831,+,MHC_I,100757524,LOC100757524,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,684352,684618,+,IgC1_MHC_I_alpha3,100757524,LOC100757524,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,695603,695884,-,MHC_I,JH000802.1_8:1,JH000802.1_8:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,696087,696344,-,MHC_I,JH000802.1_8:1,JH000802.1_8:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,698429,698659,+,MHC_I,JH000802.1_8:2,JH000802.1_8:2,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,701390,701470,+,MHC_I,100757804,LOC100757804,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,701494,701571,+,MHC_I,100757804,LOC100757804,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,702420,702842,+,IgC1_MHC_I_alpha3,100757804,LOC100757804,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,712773,713111,-,IgC1_MHC_I_alpha3,100758095,LOC100758095,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,713627,713911,-,MHC_I,100758095,LOC100758095,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,714173,714388,-,MHC_I,100758095,LOC100758095,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,727474,727638,-,IgC1_MHC_I_alpha3,100758095,LOC100758095,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,728181,728462,-,MHC_I,100758095,LOC100758095,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,728720,728992,-,MHC_I,100758095,LOC100758095,mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,733970,734178,+,IgC1_MHC_I_alpha3,JH000802.1_10:1,JH000802.1_10:1,NA,NA,FALSE
MHCI,chinese.hamster,JH000802.1,745741,746106,-,IgC1_MHC_I_alpha3,100758672,LOC100758672,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,746582,746857,-,MHC_I,100758672,LOC100758672,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,747126,747398,-,MHC_I,100758672,LOC100758672,pseudogene,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,750971,751375,-,IgC1_MHC_I_alpha3,100758961,LOC100758961,mRNA,aa_OG0034954,TRUE
MHCI,chinese.hamster,JH000802.1,751870,752143,-,MHC_I,100758961,LOC100758961,mRNA,aa_OG0034954,TRUE
MHCI,chinese.hamster,JH000802.1,752396,752611,-,MHC_I,100758961,LOC100758961,mRNA,aa_OG0034954,TRUE
MHCI,chinese.hamster,JH000802.1,772179,772499,+,MHC_I,ENSCGRG00000015723;100773242,NA;LOC100773242,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,772635,772916,+,MHC_I,ENSCGRG00000015723;100773242,NA;LOC100773242,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,773449,773760,+,IgC1_MHC_I_alpha3,ENSCGRG00000015723;100773242,NA;LOC100773242,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,780433,780744,+,MHC_I,ENSCGRG00000013504,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,780986,781252,+,MHC_I,ENSCGRG00000013504,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000802.1,781716,782018,+,IgC1_MHC_I_alpha3,ENSCGRG00000013504,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000969.1,648242,648514,+,MHC_I,ENSCGRG00000012602;100689009,NA;LOC100689009,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH000969.1,649860,650252,+,IgC1_MHC_I_alpha3,ENSCGRG00000012602;100689009,NA;LOC100689009,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH001327.1,173492,173762,-,IgC1_MHC_I_alpha3,JH001327.1_1:1,JH001327.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH001393.1,403965,404156,-,IgC1_MHC_I_alpha3,JH001393.1_1:1,JH001393.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,6020,6298,-,IgC1_MHC_I_alpha3,JH002416.1_1:1,JH002416.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,11311,11676,-,IgC1_MHC_I_alpha3,ENSCGRG00000004704;113831254,NA;LOC113831254,protein_coding;mRNA,aa_OG0000000;aa_OG0030473,TRUE
MHCI,chinese.hamster,JH002416.1,15989,16354,-,IgC1_MHC_I_alpha3,ENSCGRG00000004704;100762182,NA;LOC100762182,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,17805,18084,-,MHC_I,ENSCGRG00000004704;100762182,NA;LOC100762182,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,18307,18585,-,MHC_I,ENSCGRG00000004704;100762182,NA;LOC100762182,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,22269,22469,-,IgC1_MHC_I_alpha3,JH002416.1_2:1,JH002416.1_2:1,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,26955,27224,+,MHC_I,JH002416.1_2:2,JH002416.1_2:2,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,32836,33189,-,IgC1_MHC_I_alpha3,ENSCGRG00000005268;100762478,NA;LOC100762478,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,34799,35074,-,MHC_I,ENSCGRG00000005268;100762478,NA;LOC100762478,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,35316,35552,-,MHC_I,ENSCGRG00000005268;100762478,NA;LOC100762478,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,67301,67648,-,IgC1_MHC_I_alpha3,ENSCGRG00000003201;100762763,NA;LOC100762763,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,69087,69335,-,MHC_I,ENSCGRG00000003201;100762763,NA;LOC100762763,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,75337,75663,-,IgC1_MHC_I_alpha3,ENSCGRG00000004170,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,77196,77453,-,MHC_I,ENSCGRG00000004170,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,77656,77966,-,MHC_I,ENSCGRG00000004170,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002416.1,79574,79723,-,IgC1_MHC_H-2_TLA,JH002416.1_3:1,JH002416.1_3:1,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,91692,91943,-,MHC_I,JH002416.1_3:2,JH002416.1_3:2,NA,NA,FALSE
MHCI,chinese.hamster,JH002416.1,92065,92313,-,MHC_I,JH002416.1_3:2,JH002416.1_3:2,NA,NA,FALSE
MHCI,chinese.hamster,JH002836.1,77159,77485,-,IgC1_MHC_I_alpha3,ENSCGRG00000006121;100761901,NA;LOC100761901,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002836.1,78581,78856,-,MHC_I,ENSCGRG00000006121;100761901,NA;LOC100761901,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH002836.1,79101,79367,-,MHC_I,ENSCGRG00000006121;100761901,NA;LOC100761901,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH006581.1,6151,6426,+,MHC_I,ENSCGRG00000000930;100689008,NA;LOC100689008,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH006581.1,7760,8152,+,IgC1_MHC_I_alpha3,ENSCGRG00000000930;100689008,NA;LOC100689008,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,chinese.hamster,JH007581.1,9254,9415,-,IgC1_MHC_I_alpha3,JH007581.1_1:1,JH007581.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH028517.1,326,601,+,MHC_I,JH028517.1_1:1,JH028517.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH032460.1,354,818,+,IgC1_MHC_I_alpha3,JH032460.1_1:1,JH032460.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH038571.1,21,179,-,MHC_I,JH038571.1_1:1,JH038571.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH084372.1,73,267,+,IgC1_MHC_I_alpha3,JH084372.1_1:1,JH084372.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH100740.1,7,213,+,IgC1_MHC_I_alpha3,JH100740.1_1:1,JH100740.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH101069.1,13,159,-,IgC1_MHC_I_alpha3,JH101069.1_1:1,JH101069.1_1:1,NA,NA,FALSE
MHCI,chinese.hamster,JH102372.1,145,210,+,IgC1_MHC_Ib_T10_T22_like,JH102372.1_1:1,JH102372.1_1:1,NA,NA,FALSE
MHCI,dmr,KN065898.1,25,216,-,MHC_I,KN065898.1_1:1,KN065898.1_1:1,NA,NA,FALSE
MHCI,dmr,KN071146.1,50,226,+,MHC_I,KN071146.1_1:1,KN071146.1_1:1,NA,NA,FALSE
MHCI,dmr,KN121670.1,5699415,5699609,-,IgC1_MHC_I_alpha3,KN121670.1_1:1,KN121670.1_1:1,NA,NA,FALSE
MHCI,dmr,KN121850.1,2720844,2721056,-,IgC1_MHC_Ib_HLA-E,KN121850.1_1:1,KN121850.1_1:1,NA,NA,FALSE
MHCI,dmr,KN121870.1,2213,2455,+,MHC_I,104859195,LOC104859195,mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN121870.1,10269,10412,+,MHC_I,KN121870.1_1:1,KN121870.1_1:1,NA,NA,FALSE
MHCI,dmr,KN121936.1,1597657,1598095,-,IgC1_MHC_Ia_HLA-B,KN121936.1_1:1,KN121936.1_1:1,NA,NA,FALSE
MHCI,dmr,KN122164.1,2004866,2005102,+,IgC1_MHC_Ib_HLA-Cw3-4,KN122164.1_1:1,KN122164.1_1:1,NA,NA,FALSE
MHCI,dmr,KN123415.1,335921,336202,+,IgC1_MHC_I_alpha3,KN123415.1_1:1,KN123415.1_1:1,NA,NA,FALSE
MHCI,dmr,KN123415.1,365089,365337,+,IgC1_MHC_I_alpha3,104875746,LOC104875746,mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,390268,390543,+,MHC_I,ENSFDAG00000011515,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,391056,391322,+,MHC_I,ENSFDAG00000011515,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,392325,392612,+,IgC1_MHC_I_alpha3,ENSFDAG00000011515,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,421360,421674,+,MHC_I,ENSFDAG00000011515,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,872945,873283,-,IgC1_MHC_I_alpha3,104875757,LOC104875757,mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,873394,873996,-,MHC_I,104875757,LOC104875757,mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN123415.1,900253,900440,-,IgC1_MHC_Ib_HLA-Cw3-4,KN123415.1_2:1,KN123415.1_2:1,NA,NA,FALSE
MHCI,dmr,KN123415.1,906838,906891,-,IgC1_MHC_I_alpha3,104875741,LOC104875741,ncRNA,rna_OG0089196,TRUE
MHCI,dmr,KN124473.1,700,978,-,IgC1_MHC_I_alpha3,ENSFDAG00000010062;104852336,NA;LOC104852336,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,7569,7661,-,MHC_I,104852336,LOC104852336,pseudogene,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,7676,7714,-,MHC_I,104852336,LOC104852336,pseudogene,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,14036,14392,-,IgC1_MHC_I_alpha3,ENSFDAG00000010062;104852337,NA;LOC104852337,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,14909,15202,-,MHC_I,ENSFDAG00000010062;104852337,NA;LOC104852337,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,15372,15647,-,MHC_I,ENSFDAG00000010062;104852337,NA;LOC104852337,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,28740,29096,-,IgC1_MHC_I_alpha3,ENSFDAG00000012388;104852285,NA;LOC104852285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,29613,29876,-,MHC_I,ENSFDAG00000012388;104852285,NA;LOC104852285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dmr,KN124473.1,30117,30389,-,MHC_I,ENSFDAG00000012388;104852285,NA;LOC104852285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,AGTP01141018.1,848,1126,+,IgC1_MHC_I_alpha3,101972759,LOC101972759,mRNA,aa_OG0035069,TRUE
MHCI,squirrel,AGTP01145527.1,2065,2319,+,MHC_I,101967945,LOC101967945,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,AGTP01145527.1,2588,2809,+,MHC_I,101967945,LOC101967945,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,AGTP01145527.1,3363,3686,+,IgC1_MHC_I_alpha3,101967945,LOC101967945,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,JH393286.1,25959309,25959743,-,IgC1_MHC_I_alpha3,ENSSTOG00000028098,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393286.1,25960759,25961154,-,MHC_I,ENSSTOG00000028098,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393339.1,7908331,7908471,+,IgC1_MHC_Ia_HLA-F,JH393339.1_1:1,JH393339.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,9386,9748,-,IgC1_MHC_I_alpha3,ENSSTOG00000025368;101974336,NA;LOC101974336,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,10297,10569,-,MHC_I,ENSSTOG00000025368;101974336,NA;LOC101974336,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,10777,10977,-,MHC_I,ENSSTOG00000025368;101974336,NA;LOC101974336,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,46651,46930,-,IgC1_MHC_I_alpha3,JH393533.1_1:1,JH393533.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,80289,80564,-,MHC_I,JH393533.1_1:2,JH393533.1_1:2,NA,NA,FALSE
MHCI,squirrel,JH393533.1,80779,81057,-,MHC_I,JH393533.1_1:2,JH393533.1_1:2,NA,NA,FALSE
MHCI,squirrel,JH393533.1,142738,143094,-,IgC1_MHC_I_alpha3,ENSSTOG00000023150,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,143645,143935,-,MHC_I,ENSSTOG00000023150,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,144168,144437,-,MHC_I,ENSSTOG00000023150,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,221306,221574,-,IgC1_MHC_Ia_HLA-B,JH393533.1_2:1,JH393533.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,236879,237153,-,IgC1_MHC_I_alpha3,101974612,LOC101974612,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,237722,237922,-,MHC_I,101974612,LOC101974612,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,237927,238013,-,MHC_I,101974612,LOC101974612,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,253093,253441,-,IgC1_MHC_I_alpha3,101974892,LOC101974892,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,254926,255197,-,MHC_I,101974892,LOC101974892,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,255402,255666,-,MHC_I,101974892,LOC101974892,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,270156,270512,-,IgC1_MHC_I_alpha3,ENSSTOG00000027066;101975172,NA;LOC101975172,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,271097,271195,-,MHC_I,ENSSTOG00000027066;101975172,NA;LOC101975172,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,271198,271338,-,MHC_I,ENSSTOG00000027066;101975172,NA;LOC101975172,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,271524,271800,-,MHC_I,ENSSTOG00000027066;101975172,NA;LOC101975172,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,303690,304052,-,IgC1_MHC_I_alpha3,ENSSTOG00000020294,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,304610,304882,-,MHC_I,ENSSTOG00000020294,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,305096,305434,-,MHC_I,ENSSTOG00000020294,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,353066,353458,-,IgC1_MHC_I_alpha3,101975453,LOC101975453,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,353984,354248,-,MHC_I,101975453,LOC101975453,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,354465,354653,-,MHC_I,101975453,LOC101975453,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,378087,378407,-,IgC1_MHC_I_alpha3,101975735,LOC101975735,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,379051,379272,-,MHC_I,101975735,LOC101975735,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,379495,379764,-,MHC_I,101975735,LOC101975735,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393533.1,404255,404710,-,IgC1_MHC_I_alpha3,ENSSTOG00000015560,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,405302,405520,-,MHC_I,ENSSTOG00000015560,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,405793,406122,-,MHC_I,ENSSTOG00000015560,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,462315,462514,-,IgC1_MHC_Ia_HLA-B,JH393533.1_3:1,JH393533.1_3:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,471356,471688,-,IgC1_MHC_I_alpha3,101976303,LOC101976303,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,472271,472544,-,MHC_I,101976303,LOC101976303,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,472776,473041,-,MHC_I,101976303,LOC101976303,pseudogene,rna_OG0065551,TRUE
MHCI,squirrel,JH393533.1,501612,501950,+,MHC_I,ENSSTOG00000021130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,502256,502528,+,MHC_I,ENSSTOG00000021130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,503086,503400,+,IgC1_MHC_I_alpha3,ENSSTOG00000021130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,532722,533027,-,IgC1_MHC_I_alpha3,101976867,LOC101976867,mRNA,aa_OG0035064,TRUE
MHCI,squirrel,JH393533.1,533594,533860,-,MHC_I,101976867,LOC101976867,mRNA,aa_OG0035064,TRUE
MHCI,squirrel,JH393533.1,534063,534383,-,MHC_I,101976867,LOC101976867,mRNA,aa_OG0035064,TRUE
MHCI,squirrel,JH393533.1,575408,575743,-,IgC1_MHC_I_alpha3,ENSSTOG00000023539,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,576316,576591,-,MHC_I,ENSSTOG00000023539,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,576806,577078,-,MHC_I,ENSSTOG00000023539,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,618436,618783,-,IgC1_MHC_I_alpha3,101977413,LOC101977413,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,619361,619429,-,MHC_I,101977413,LOC101977413,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,619444,619626,-,MHC_I,101977413,LOC101977413,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,619857,620154,-,MHC_I,101977413,LOC101977413,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,669045,669410,-,IgC1_MHC_I_alpha3,ENSSTOG00000025614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,669961,670227,-,MHC_I,ENSSTOG00000025614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,670454,670555,-,MHC_I,ENSSTOG00000025614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,670557,670727,-,MHC_I,ENSSTOG00000025614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,691687,691981,-,IgC1_MHC_I_alpha3,JH393533.1_4:1,JH393533.1_4:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,692529,692822,-,MHC_I,JH393533.1_4:1,JH393533.1_4:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,693047,693322,-,MHC_I,JH393533.1_4:1,JH393533.1_4:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,705355,705684,-,IgC1_MHC_I_alpha3,101978545,LOC101978545,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,706184,706450,-,MHC_I,101978545,LOC101978545,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,706686,706969,-,MHC_I,101978545,LOC101978545,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,736294,736521,-,IgC1_MHC_Ia_HLA-G,JH393533.1_5:1,JH393533.1_5:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,736953,737219,-,MHC_I,JH393533.1_5:1,JH393533.1_5:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,754579,754872,+,MHC_I,ENSSTOG00000019725,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,755089,755355,+,MHC_I,ENSSTOG00000019725,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,755908,756246,+,IgC1_MHC_I_alpha3,ENSSTOG00000019725,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,760031,760150,-,MHC_I,101954958,LOC101954958,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,760156,760278,-,MHC_I,101954958,LOC101954958,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,760525,760791,-,MHC_I,101954958,LOC101954958,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,776468,776821,-,IgC1_MHC_I_alpha3,101955244,LOC101955244,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,777313,777399,-,MHC_I,101955244,LOC101955244,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,777437,777604,-,MHC_I,101955244,LOC101955244,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,777757,777981,-,MHC_I,101955244,LOC101955244,pseudogene,rna_OG0044319,TRUE
MHCI,squirrel,JH393533.1,1422525,1422827,-,IgC1_MHC_I_alpha3,ENSSTOG00000027981;101961020,NA;LOC101961020,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,1423355,1423627,-,MHC_I,ENSSTOG00000027981;101961020,NA;LOC101961020,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,1423880,1424155,-,MHC_I,ENSSTOG00000027981;101961020,NA;LOC101961020,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393533.1,1792922,1792990,+,MHC_I,JH393533.1_6:1,JH393533.1_6:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,1793031,1793186,+,MHC_I,JH393533.1_6:1,JH393533.1_6:1,NA,NA,FALSE
MHCI,squirrel,JH393533.1,1793724,1794028,+,IgC1_MHC_Ib_HLA-Cw3-4,JH393533.1_6:1,JH393533.1_6:1,NA,NA,FALSE
MHCI,squirrel,JH393537.1,129178,129249,-,MHC_I,JH393537.1_1:1,JH393537.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393537.1,258292,258627,-,IgC1_MHC_I_alpha3,101970010,LOC101970010,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393537.1,259209,259484,-,MHC_I,101970010,LOC101970010,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393537.1,259707,259988,-,MHC_I,101970010,LOC101970010,pseudogene,rna_OG0065552,TRUE
MHCI,squirrel,JH393537.1,1998962,1999237,+,MHC_I,ENSSTOG00000024982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,1999485,1999739,+,MHC_I,ENSSTOG00000024982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2000520,2000828,+,IgC1_MHC_I_alpha3,ENSSTOG00000024982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2004582,2004758,+,MHC_I,JH393537.1_2:1,JH393537.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393537.1,2011980,2012282,+,MHC_I,ENSSTOG00000026054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2012512,2012787,+,MHC_I,ENSSTOG00000026054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2013339,2013683,+,IgC1_MHC_I_alpha3,ENSSTOG00000026054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2018880,2019137,+,MHC_I,ENSSTOG00000029000;101968289,NA;LOC101968289,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2019432,2019707,+,MHC_I,ENSSTOG00000029000;101968289,NA;LOC101968289,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2020372,2020650,+,IgC1_MHC_I_alpha3,101968289,LOC101968289,mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2038850,2039107,+,MHC_I,ENSSTOG00000030785;101954959,NA;LOC101954959,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2039375,2039650,+,MHC_I,ENSSTOG00000030785;101954959,NA;LOC101954959,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2040315,2040644,+,IgC1_MHC_I_alpha3,ENSSTOG00000029000;101954959,NA;LOC101954959,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393537.1,2055930,2056208,+,MHC_I,101955245,LOC101955245,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393537.1,2056472,2056765,+,MHC_I,101955245,LOC101955245,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393537.1,2057827,2058093,+,IgC1_MHC_I_alpha3,101955245,LOC101955245,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393537.1,2084026,2084279,+,MHC_I,JH393537.1_3:1,JH393537.1_3:1,NA,NA,FALSE
MHCI,squirrel,JH393537.1,2315474,2315749,-,MHC_I,JH393537.1_3:6,JH393537.1_3:6,NA,NA,FALSE
MHCI,squirrel,JH393636.1,784338,784646,-,IgC1_MHC_I_alpha3,ENSSTOG00000022405,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393636.1,786428,786715,-,MHC_I,ENSSTOG00000022405,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393636.1,786873,787157,-,MHC_I,ENSSTOG00000022405,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,27575,27712,+,MHC_I,JH393647.1_1:1,JH393647.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393647.1,27948,28142,+,MHC_I,JH393647.1_1:1,JH393647.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393647.1,28683,29020,+,IgC1_MHC_I_alpha3,JH393647.1_1:1,JH393647.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393647.1,48977,49114,+,MHC_I,101970430,LOC101970430,ncRNA,rna_OG0044323,TRUE
MHCI,squirrel,JH393647.1,49382,49645,+,MHC_I,101970430,LOC101970430,ncRNA,rna_OG0044323,TRUE
MHCI,squirrel,JH393647.1,50705,50966,+,IgC1_MHC_I_alpha3,101970430,LOC101970430,ncRNA,rna_OG0044323,TRUE
MHCI,squirrel,JH393647.1,65427,65531,+,MHC_I,JH393647.1_2:1,JH393647.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393647.1,66363,66613,+,IgC1_MHC_I_alpha3,JH393647.1_2:1,JH393647.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393647.1,115013,115180,+,IgC1_MHC_I_alpha3,JH393647.1_2:2,JH393647.1_2:2,NA,NA,FALSE
MHCI,squirrel,JH393647.1,158276,158548,+,MHC_I,ENSSTOG00000019861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,158796,159062,+,MHC_I,ENSSTOG00000019861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,159945,160150,+,IgC1_MHC_Ia_HLA-B,ENSSTOG00000019861,NA,NA,NA,FALSE
MHCI,squirrel,JH393647.1,160618,160962,+,IgC1_MHC_I_alpha3,ENSSTOG00000019861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,201954,202238,+,MHC_I,ENSSTOG00000034348,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,203717,203992,+,MHC_I,ENSSTOG00000034348,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,204563,204889,+,IgC1_MHC_I_alpha3,ENSSTOG00000034348,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393647.1,992184,992438,+,MHC_I,JH393647.1_4:4,JH393647.1_4:4,NA,NA,FALSE
MHCI,squirrel,JH393663.1,827861,828179,-,IgC1_MHC_Ia_HLA-B,JH393663.1_1:1,JH393663.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393663.1,828705,828893,-,MHC_I,JH393663.1_1:1,JH393663.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393663.1,829483,829725,-,MHC_I,JH393663.1_1:1,JH393663.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393690.1,132589,132802,+,IgC1_MHC_I_alpha3,JH393690.1_1:1,JH393690.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393838.1,126878,127064,+,MHC_I,101957601,LOC101957601,pseudogene,rna_OG0075730,TRUE
MHCI,squirrel,JH393838.1,127322,127619,+,MHC_I,101957601,LOC101957601,pseudogene,rna_OG0075730,TRUE
MHCI,squirrel,JH393838.1,128145,128462,+,IgC1_MHC_I_alpha3,101957601,LOC101957601,pseudogene,rna_OG0075730,TRUE
MHCI,squirrel,JH393892.1,108711,109109,+,MHC_I,ENSSTOG00000029130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393892.1,109306,109578,+,MHC_I,ENSSTOG00000029130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393892.1,110130,110465,+,IgC1_MHC_I_alpha3,ENSSTOG00000029130,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393892.1,231863,231982,+,MHC_I,101958851,LOC101958851,NA,NA,FALSE
MHCI,squirrel,JH393892.1,232207,232482,+,MHC_I,101958851,LOC101958851,mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393892.1,233086,233259,+,IgC1_MHC_I_alpha3,101958851,LOC101958851,mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393911.1,72994,73188,+,MHC_I,JH393911.1_1:2,JH393911.1_1:2,NA,NA,FALSE
MHCI,squirrel,JH393911.1,73505,73765,+,MHC_I,JH393911.1_1:2,JH393911.1_1:2,NA,NA,FALSE
MHCI,squirrel,JH393911.1,74259,74525,+,IgC1_MHC_I_alpha3,JH393911.1_1:2,JH393911.1_1:2,NA,NA,FALSE
MHCI,squirrel,JH393911.1,202735,203006,+,IgC1_MHC_I_alpha3,ENSSTOG00000030447,NA,lincRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH393911.1,206481,206657,+,MHC_I,JH393911.1_2:1,JH393911.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393920.1,562,702,-,IgC1_MHC_I_alpha3,JH393920.1_1:1,JH393920.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393920.1,728,836,-,IgC1_MHC_I_alpha3,JH393920.1_1:1,JH393920.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393920.1,1420,1587,-,MHC_I,JH393920.1_1:1,JH393920.1_1:1,NA,NA,FALSE
MHCI,squirrel,JH393920.1,32065,32331,-,IgC1_MHC_I_alpha3,101960359,LOC101960359,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393920.1,33393,33686,-,MHC_I,101960359,LOC101960359,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393920.1,33950,34231,-,MHC_I,101960359,LOC101960359,pseudogene,rna_OG0089032,TRUE
MHCI,squirrel,JH393920.1,46982,47311,-,IgC1_MHC_I_alpha3,ENSSTOG00000027163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393920.1,47974,48249,-,MHC_I,ENSSTOG00000027163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393920.1,48512,48781,-,MHC_I,ENSSTOG00000027163,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH393920.1,67205,67483,-,IgC1_MHC_I_alpha3,101960943,LOC101960943,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,JH393920.1,83708,84076,-,IgC1_MHC_I_alpha3,101960943,LOC101960943,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,JH393920.1,84604,84825,-,MHC_I,101960943,LOC101960943,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,JH393920.1,85278,85565,-,MHC_I,101960943,LOC101960943,pseudogene,rna_OG0152113,TRUE
MHCI,squirrel,JH393920.1,102645,102782,-,MHC_I,JH393920.1_2:1,JH393920.1_2:1,NA,NA,FALSE
MHCI,squirrel,JH393920.1,106164,106493,-,IgC1_MHC_I_alpha3,101961229,LOC101961229,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393920.1,107303,107571,-,MHC_I,101961229,LOC101961229,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH393920.1,107804,108079,-,MHC_I,101961229,LOC101961229,pseudogene,aa_OG0000000,TRUE
MHCI,squirrel,JH394084.1,12923,13198,-,MHC_I,ENSSTOG00000028425;101960945,NA;LOC101960945,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH394084.1,13421,13702,-,MHC_I,ENSSTOG00000028425;101960945,NA;LOC101960945,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,squirrel,JH394541.1,1725,1880,-,IgC1_MHC_I_alpha3,ENSSTOG00000020951,NA,NA,NA,FALSE
MHCI,squirrel,JH394541.1,3598,3933,-,IgC1_MHC_I_alpha3,ENSSTOG00000020951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH394541.1,4501,4767,-,MHC_I,ENSSTOG00000020951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,squirrel,JH394541.1,4996,5295,-,MHC_I,ENSSTOG00000020951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01230750.1,1939,2211,+,MHC_I,APMT01230750.1_1:1,APMT01230750.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,APMT01230961.1,1267,1596,+,MHC_I,101835748,LOC101835748,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01230961.1,1861,2136,+,MHC_I,101835748,LOC101835748,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01231002.1,775,1050,+,MHC_I,101836270,LOC101836270,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01231002.1,1307,1579,+,MHC_I,101836270,LOC101836270,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01231002.1,2061,2267,+,IgC1_MHC_I_alpha3,101836270,LOC101836270,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,APMT01237533.1,135,413,-,MHC_I,APMT01237533.1_1:1,APMT01237533.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708128.1,15449144,15449224,+,IgC1_MHC_Ia_H2Db_H2Ld,KB708128.1_1:1,KB708128.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708128.1,15449233,15449430,+,IgC1_MHC_I_alpha3,KB708128.1_1:1,KB708128.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708206.1,10102050,10102250,+,IgC1_MHC_Ia_HLA-F,KB708206.1_1:1,KB708206.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708304.1,24068,24295,+,MHC_I,KB708304.1_1:1,KB708304.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708304.1,24297,24350,+,MHC_I,KB708304.1_1:1,KB708304.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708304.1,24520,24795,+,MHC_I,KB708304.1_1:1,KB708304.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708304.1,60992,61084,+,MHC_I,KB708304.1_1:2,KB708304.1_1:2,NA,NA,FALSE
MHCI,golden.hamster,KB708308.1,1963858,1964091,+,IgC1_MHC_I_alpha3,KB708308.1_1:1,KB708308.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708322.1,1158998,1159270,+,MHC_I,101837025,LOC101837025,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708322.1,1159559,1159834,+,MHC_I,101837025,LOC101837025,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708360.1,720845,721231,-,IgC1_MHC_I_alpha3,101826062,LOC101826062,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708360.1,722534,722641,-,MHC_I,101826062,LOC101826062,NA,NA,FALSE
MHCI,golden.hamster,KB708360.1,722676,722807,-,MHC_I,101826062,LOC101826062,NA,NA,FALSE
MHCI,golden.hamster,KB708360.1,723079,723312,-,MHC_I,101826062,LOC101826062,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,11191,11463,-,MHC_I,101837574,LOC101837574,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,1212950,1213123,+,MHC_I,101823249,LOC101823249,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,1213466,1213741,+,MHC_I,101823249,LOC101823249,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,1222001,1222279,+,MHC_I,110339465,LOC110339465,NA,NA,FALSE
MHCI,golden.hamster,KB708367.1,1222281,1222334,+,MHC_I,110339465,LOC110339465,NA,NA,FALSE
MHCI,golden.hamster,KB708367.1,1222504,1222782,+,MHC_I,110339465,LOC110339465,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,1228107,1228379,+,MHC_I,101823782,LOC101823782,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708367.1,1228587,1228862,+,MHC_I,101823782,LOC101823782,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,2691,3361,-,MHC_I,110339535,LOC110339535,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,7666,8022,-,IgC1_MHC_I_alpha3,110339535;106022645,LOC110339535;LOC106022645,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,17349,17624,-,MHC_I,110339535;106022645,LOC110339535;LOC106022645,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,17747,18019,-,MHC_I,110339535;106022645,LOC110339535;LOC106022645,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,63061,63345,-,MHC_I,110339535,LOC110339535,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,76784,77053,-,MHC_I,106022643,LOC106022643,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,77182,77352,-,MHC_I,106022643,LOC106022643,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,83388,83441,-,IgC1_MHC_I_alpha3,KB708385.1_1:1,KB708385.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,130972,131247,-,MHC_I,106022644,LOC106022644,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,131417,131566,-,MHC_I,106022644,LOC106022644,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,132518,132592,-,IgC1_MHC_I_alpha3,106022644,LOC106022644,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,132694,132750,-,IgC1_MHC_I_alpha3,106022644,LOC106022644,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,132771,132899,-,IgC1_MHC_I_alpha3,106022644,LOC106022644,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,136985,137074,+,MHC_I,KB708385.1_2:2,KB708385.1_2:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,137266,137550,+,MHC_I,KB708385.1_2:2,KB708385.1_2:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,143959,144234,-,MHC_I,101843559,LOC101843559,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,144384,144721,-,MHC_I,101843559,LOC101843559,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,149185,149423,-,MHC_I,KB708385.1_3:1,KB708385.1_3:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,149571,149897,-,MHC_I,KB708385.1_3:1,KB708385.1_3:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,199836,200135,-,IgC1_MHC_I_alpha3,ENSMAUG00000018352,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,200593,200859,-,MHC_I,ENSMAUG00000018352,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,201117,201428,-,MHC_I,ENSMAUG00000018352,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,209088,209393,-,MHC_I,KB708385.1_4:1,KB708385.1_4:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,216803,217009,-,MHC_I,KB708385.1_4:2,KB708385.1_4:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,223053,223328,+,MHC_I,101826591,LOC101826591,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,223585,223857,+,MHC_I,101826591,LOC101826591,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,224420,224746,+,IgC1_MHC_I_alpha3,101826591,LOC101826591,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,232443,232697,+,MHC_I,101826591,LOC101826591,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,232959,233240,+,MHC_I,101826591,LOC101826591,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,235354,235617,+,IgC1_MHC_I_alpha3,101826591,LOC101826591,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,246482,246793,-,IgC1_MHC_I_alpha3,101827117,LOC101827117,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,247234,247515,-,MHC_I,101827117,LOC101827117,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,247773,248045,-,MHC_I,101827117,LOC101827117,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,256892,257161,+,MHC_I,101827385,LOC101827385,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,257423,257692,+,MHC_I,101827385,LOC101827385,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,276052,276240,+,MHC_I,101827385,LOC101827385,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,276752,277090,+,IgC1_MHC_I_alpha3,101827385,LOC101827385,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,289640,289870,-,IgC1_MHC_I_alpha3,KB708385.1_6:1,KB708385.1_6:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,291432,291566,-,MHC_I,KB708385.1_6:1,KB708385.1_6:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,312012,312185,-,IgC1_MHC_I_alpha3,KB708385.1_6:2,KB708385.1_6:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,312632,312916,-,MHC_I,KB708385.1_6:2,KB708385.1_6:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,315090,315257,-,IgC1_MHC_I_alpha3,KB708385.1_6:2,KB708385.1_6:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,316577,316849,-,MHC_I,KB708385.1_6:2,KB708385.1_6:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,327077,327346,-,MHC_I,KB708385.1_6:3,KB708385.1_6:3,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,337608,337853,+,MHC_I,101827901,LOC101827901,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,338138,338419,+,MHC_I,101827901,LOC101827901,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,338871,339176,+,IgC1_MHC_I_alpha3,101827901,LOC101827901,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,351295,351732,-,IgC1_MHC_I_alpha3,KB708385.1_7:1,KB708385.1_7:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,352146,352502,-,MHC_I,KB708385.1_7:1,KB708385.1_7:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,352751,353020,-,MHC_I,KB708385.1_7:1,KB708385.1_7:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,357920,358108,+,IgC1_MHC_I_alpha3,KB708385.1_7:2,KB708385.1_7:2,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,364084,364470,-,IgC1_MHC_I_alpha3,ENSMAUG00000000050,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,364919,365254,-,MHC_I,ENSMAUG00000000050,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,365511,365783,-,MHC_I,ENSMAUG00000000050,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,544985,545326,-,IgC1_MHC_I_alpha3,101822540,LOC101822540,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,545742,546014,-,MHC_I,101822540,LOC101822540,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,546242,546517,-,MHC_I,101822540,LOC101822540,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,562115,562396,-,IgC1_MHC_I_alpha3,101829498,LOC101829498,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,562973,563239,-,MHC_I,101829498,LOC101829498,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,563441,563716,-,MHC_I,101829498,LOC101829498,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,569891,570196,-,IgC1_MHC_I_alpha3,101829769,LOC101829769,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,570727,571026,-,MHC_I,101829769,LOC101829769,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,571196,571468,-,MHC_I,101829769,LOC101829769,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,580288,580620,-,IgC1_MHC_I_alpha3,KB708385.1_8:1,KB708385.1_8:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,581160,581426,-,MHC_I,KB708385.1_8:1,KB708385.1_8:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,581628,581843,-,MHC_I,KB708385.1_8:1,KB708385.1_8:1,NA,NA,FALSE
MHCI,golden.hamster,KB708385.1,590192,590578,-,IgC1_MHC_I_alpha3,101830304,LOC101830304,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,591095,591376,-,MHC_I,101830304,LOC101830304,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,591578,591793,-,MHC_I,101830304,LOC101830304,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,599141,599461,-,IgC1_MHC_I_alpha3,101830573,LOC101830573,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,600026,600292,-,MHC_I,101830573,LOC101830573,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,600470,600760,-,MHC_I,101830573,LOC101830573,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,622560,622861,-,IgC1_MHC_I_alpha3,106020750,LOC106020750,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,623345,624013,-,MHC_I,106020750,LOC106020750,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,633077,633403,-,IgC1_MHC_I_alpha3,ENSMAUG00000006930;101822814,NA;LOC101822814,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,636112,636456,-,MHC_I,101822814,LOC101822814,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,636656,636931,-,MHC_I,101822814,LOC101822814,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,641669,641995,-,IgC1_MHC_I_alpha3,101830838,LOC101830838,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,642593,642670,-,MHC_I,101830838,LOC101830838,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,642886,643136,-,MHC_I,101830838,LOC101830838,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,873278,873628,-,IgC1_MHC_I_alpha3,ENSMAUG00000003870,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,874382,874651,-,MHC_I,ENSMAUG00000003870,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708385.1,874888,875214,-,MHC_I,ENSMAUG00000003870,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,6897,7160,+,MHC_I,ENSMAUG00000009998,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,7369,7644,+,MHC_I,ENSMAUG00000009998,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,20159,20395,+,MHC_I,KB708411.1_1:1,KB708411.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708411.1,20603,20797,+,MHC_I,KB708411.1_1:1,KB708411.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708411.1,34853,35125,+,MHC_I,ENSMAUG00000010143,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,35338,35613,+,MHC_I,ENSMAUG00000010143,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,38794,39084,+,IgC1_MHC_I_alpha3,ENSMAUG00000010143,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,48103,48375,+,MHC_I,101832169,LOC101832169,pseudogene,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,50257,50376,+,MHC_I,101832169,LOC101832169,NA,NA,FALSE
MHCI,golden.hamster,KB708411.1,50393,50773,+,MHC_I,101832169,LOC101832169,NA,NA,FALSE
MHCI,golden.hamster,KB708411.1,66448,66720,+,MHC_I,ENSMAUG00000016894;101832429,NA;LOC101832429,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,66890,67169,+,MHC_I,ENSMAUG00000016894;101832429,NA;LOC101832429,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,87500,87772,+,MHC_I,ENSMAUG00000019177,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,88010,88285,+,MHC_I,ENSMAUG00000019177,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,89028,89114,+,IgC1_MHC_Ia_RT1-Aa,ENSMAUG00000019177,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,89164,89244,+,IgC1_MHC_Ia_H-2Dd,101832429,LOC101832429,mRNA,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,117053,117319,+,MHC_I,ENSMAUG00000007959,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,118656,118952,+,MHC_I,ENSMAUG00000007959,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708411.1,119291,119614,+,IgC1_MHC_I_alpha3,ENSMAUG00000007959,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,golden.hamster,KB708808.1,487,627,+,MHC_I,KB708808.1_1:1,KB708808.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB708808.1,36419,36577,-,MHC_I,KB708808.1_1:2,KB708808.1_1:2,NA,NA,FALSE
MHCI,golden.hamster,KB708808.1,36580,36690,-,MHC_I,KB708808.1_1:2,KB708808.1_1:2,NA,NA,FALSE
MHCI,golden.hamster,KB709679.1,9707,9865,-,MHC_I,KB709679.1_1:1,KB709679.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB709679.1,9868,9975,-,MHC_I,KB709679.1_1:1,KB709679.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB709679.1,11899,11991,+,MHC_I,KB709679.1_1:1,KB709679.1_1:1,NA,NA,FALSE
MHCI,golden.hamster,KB709679.1,21965,22249,+,MHC_I,KB709679.1_1:2,KB709679.1_1:2,NA,NA,FALSE
MHCI,golden.hamster,KB710892.1,405,635,+,MHC_I,KB710892.1_1:1,KB710892.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,10,83923612,83923695,+,IgC1_MHC_Ia_RT1-Aa,10_1:1,10_1:1,NA,NA,FALSE
MHCI,prairie.vole,15,6338372,6338518,+,MHC_I,15_1:1,15_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,198306,198698,-,IgC1_MHC_I_alpha3,ENSMOCG00000019857,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,199243,199518,-,MHC_I,ENSMOCG00000019857,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,199762,200034,-,MHC_I,ENSMOCG00000019857,H2-M11,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,205420,205920,-,IgC1_MHC_I_alpha3,JH996517.1_1:1,JH996517.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,206334,206615,-,MHC_I,JH996517.1_1:1,JH996517.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,206842,207114,-,MHC_I,JH996517.1_1:1,JH996517.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,210673,210837,+,MHC_I,JH996517.1_1:2,JH996517.1_1:2,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,217553,217846,+,MHC_I,ENSMOCG00000004986,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,218012,218281,+,MHC_I,ENSMOCG00000004986,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,218827,219138,+,IgC1_MHC_I_alpha3,ENSMOCG00000004986,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,224710,225012,+,MHC_I,101987305,LOC101987305,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,225273,225539,+,MHC_I,101987305,LOC101987305,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,225911,226287,+,IgC1_MHC_I_alpha3,101987305,LOC101987305,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,271927,272199,+,MHC_I,ENSMOCG00000000291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,272399,272674,+,MHC_I,ENSMOCG00000000291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,274414,274770,+,IgC1_MHC_I_alpha3,ENSMOCG00000000291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,286561,286833,+,MHC_I,ENSMOCG00000000982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,286953,287291,+,MHC_I,ENSMOCG00000000982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,289194,289550,+,IgC1_MHC_I_alpha3,ENSMOCG00000000982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,309515,309889,+,MHC_I,101990404,LOC101990404,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,310144,310416,+,MHC_I,101990404,LOC101990404,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,312526,312609,+,IgC1_MHC_I_alpha3,106144429,LOC106144429,ncRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,327800,328123,+,IgC1_MHC_I_alpha3,JH996517.1_2:1,JH996517.1_2:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,332225,332497,+,MHC_I,ENSMOCG00000019167,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,332681,332926,+,MHC_I,ENSMOCG00000019167,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,333620,333973,+,IgC1_MHC_I_alpha3,ENSMOCG00000019167,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,338646,338864,-,MHC_I,101989547,LOC101989547,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,341761,342033,+,MHC_I,101989547,LOC101989547,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,342264,342533,+,MHC_I,101989547,LOC101989547,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,343031,343390,+,IgC1_MHC_I_alpha3,101989547,LOC101989547,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,352042,352353,-,IgC1_MHC_I_alpha3,JH996517.1_4:1,JH996517.1_4:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,355815,355880,-,MHC_I,101998299,LOC101998299,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,355936,356001,-,MHC_I,101998299,LOC101998299,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,356264,356311,-,MHC_I,101998299,LOC101998299,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,356313,356486,-,MHC_I,101998299,LOC101998299,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,358977,359351,-,IgC1_MHC_I_alpha3,101998576,LOC101998576,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,359854,360120,-,MHC_I,101998576,LOC101998576,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,360231,360569,-,MHC_I,101998576,LOC101998576,pseudogene,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,361558,361920,-,IgC1_MHC_I_alpha3,ENSMOCG00000002230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,362420,362689,-,MHC_I,ENSMOCG00000002230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,362920,363192,-,MHC_I,ENSMOCG00000002230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,373876,374148,+,MHC_I,ENSMOCG00000015832,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,374377,374646,+,MHC_I,ENSMOCG00000015832,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,375144,375503,+,IgC1_MHC_I_alpha3,ENSMOCG00000015832;101990404,NA;LOC101990404,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,387496,387791,-,IgC1_MHC_I_alpha3,JH996517.1_5:1,JH996517.1_5:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,394412,394600,-,MHC_I,113455688,LOC113455688,pseudogene,NA,TRUE
MHCI,prairie.vole,JH996517.1,394878,394973,-,MHC_I,113455688,LOC113455688,pseudogene,NA,TRUE
MHCI,prairie.vole,JH996517.1,409560,409832,+,MHC_I,ENSMOCG00000013347;106144430,NA;LOC106144430,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,410064,410333,+,MHC_I,ENSMOCG00000013347;106144430,NA;LOC106144430,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,410997,411188,+,IgC1_MHC_I_alpha3,ENSMOCG00000013347,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,430078,430344,+,MHC_I,ENSMOCG00000012918;101999138,H2-T24;LOC101999138,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,431174,431455,+,MHC_I,ENSMOCG00000012918;101999138,H2-T24;LOC101999138,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,431615,431923,+,IgC1_MHC_I_alpha3,ENSMOCG00000012918;101999138,H2-T24;LOC101999138,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,921944,922294,-,IgC1_MHC_I_alpha3,ENSMOCG00000016807,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,922848,923129,-,MHC_I,ENSMOCG00000016807,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,923198,923566,-,MHC_I,ENSMOCG00000016807,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,929058,929417,-,IgC1_MHC_I_alpha3,ENSMOCG00000006113,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,931106,931372,-,MHC_I,ENSMOCG00000006113,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,931432,931839,-,MHC_I,ENSMOCG00000006113,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,954150,954506,-,IgC1_MHC_I_alpha3,ENSMOCG00000010777,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,955399,955674,-,MHC_I,ENSMOCG00000010777,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,955862,956134,-,MHC_I,ENSMOCG00000010777,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,975753,976085,-,IgC1_MHC_I_alpha3,ENSMOCG00000011213,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,979458,979733,-,MHC_I,ENSMOCG00000011213,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,979997,980272,-,MHC_I,ENSMOCG00000011213,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996517.1,1602017,1602292,-,MHC_I,JH996517.1_6:1,JH996517.1_6:1,NA,NA,FALSE
MHCI,prairie.vole,JH996517.1,1602562,1602939,-,MHC_I,JH996517.1_6:1,JH996517.1_6:1,NA,NA,FALSE
MHCI,prairie.vole,JH996526.1,426552,426795,-,IgC1_MHC_I_alpha3,JH996526.1_1:1,JH996526.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH996655.1,14556,14816,+,MHC_I,101988348,LOC101988348,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,15059,15328,+,MHC_I,101988348,LOC101988348,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,26869,27165,-,IgC1_MHC_I_alpha3,ENSMOCG00000012630;101988051,NA;LOC101988051,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,27852,28121,-,MHC_I,101988051,LOC101988051,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,28353,28622,-,MHC_I,101988051,LOC101988051,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,36661,36939,-,IgC1_MHC_I_alpha3,101988625,LOC101988625,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,37463,38179,-,MHC_I,101988625,LOC101988625,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,44279,44617,-,IgC1_MHC_I_alpha3,101988902,LOC101988902,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,45210,45476,-,MHC_I,101988902,LOC101988902,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH996655.1,45679,45954,-,MHC_I,101988902,LOC101988902,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,JH997208.1,9105,9170,-,IgC1_MHC_I_alpha3,JH997208.1_1:1,JH997208.1_1:1,NA,NA,FALSE
MHCI,prairie.vole,JH997325.1,2818,3438,+,IgC1_MHC_I_alpha3,101997254,LOC101997254,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,51403228,51403494,+,IgC1_MHC_I_alpha3,LG2_1:1,LG2_1:1,NA,NA,FALSE
MHCI,prairie.vole,LG2,53513466,53513798,-,IgC1_MHC_I_alpha3,ENSMOCG00000014473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54139610,54139882,+,MHC_I,101997088,LOC101997088,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54140152,54140427,+,MHC_I,101997088,LOC101997088,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54142330,54142524,+,IgC1_MHC_I_alpha3,101997088,LOC101997088,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54377782,54377952,-,MHC_I,101996905,LOC101996905,NA,NA,FALSE
MHCI,prairie.vole,LG2,54379721,54380056,-,IgC1_MHC_I_alpha3,101996905,LOC101996905,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54380440,54380721,-,MHC_I,101996905,LOC101996905,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54380947,54381222,-,MHC_I,101996905,LOC101996905,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54396611,54396946,-,IgC1_MHC_I_alpha3,101997184,LOC101997184,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54397532,54397798,-,MHC_I,101997184,LOC101997184,NA,NA,FALSE
MHCI,prairie.vole,LG2,54398001,54398273,-,MHC_I,101997184,LOC101997184,NA,NA,FALSE
MHCI,prairie.vole,LG2,54422906,54423283,+,MHC_I,101996056,LOC101996056,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54423488,54423751,+,MHC_I,101996056,LOC101996056,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54424301,54424633,+,IgC1_MHC_I_alpha3,101996056,LOC101996056,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54433311,54433580,+,MHC_I,113457578,LOC113457578,mRNA,NA,TRUE
MHCI,prairie.vole,LG2,54433810,54434079,+,MHC_I,113457578,LOC113457578,mRNA,NA,TRUE
MHCI,prairie.vole,LG2,54463464,54463730,-,MHC_I,101997184,LOC101997184,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54463921,54464223,-,MHC_I,101997184,LOC101997184,mRNA,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54469138,54469464,-,IgC1_MHC_I_alpha3,ENSMOCG00000004410,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54469998,54470755,-,MHC_I,ENSMOCG00000004410,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54705132,54705497,-,IgC1_MHC_I_alpha3,ENSMOCG00000021881,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54705714,54705989,-,MHC_I,ENSMOCG00000021881,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG2,54706231,54706497,-,MHC_I,ENSMOCG00000021881,NA,protein_coding,aa_OG0000000,TRUE
MHCI,prairie.vole,LG4,51454104,51454226,+,IgC1_MHC_Ib_HLA-Cw3-4,LG4_1:1,LG4_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01041616.1,229,348,+,MHC_I,AXCS01041616.1_1:1,AXCS01041616.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01070085.1,1,267,+,MHC_I,AXCS01070085.1_1:1,AXCS01070085.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01107273.1,828,959,+,MHC_I,AXCS01107273.1_1:1,AXCS01107273.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01138069.1,2,91,-,MHC_I,AXCS01138069.1_1:1,AXCS01138069.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01141718.1,368,634,-,MHC_I,103744250,LOC103744250,mRNA,aa_OG0030045,TRUE
MHCI,bmr,AXCS01141718.1,864,1127,-,MHC_I,103744250,LOC103744250,mRNA,aa_OG0030045,TRUE
MHCI,bmr,AXCS01238053.1,3,200,-,IgC1_MHC_I_alpha3,AXCS01238053.1_1:1,AXCS01238053.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01273073.1,81,242,+,IgC1_MHC_I_alpha3,AXCS01273073.1_1:1,AXCS01273073.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01282760.1,159,263,+,IgC1_MHC_I_alpha3,AXCS01282760.1_1:1,AXCS01282760.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01304064.1,3,47,+,MHC_I,AXCS01304064.1_1:1,AXCS01304064.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01311494.1,87,383,+,MHC_I,AXCS01311494.1_1:1,AXCS01311494.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01311570.1,53,328,+,MHC_I,AXCS01311570.1_1:1,AXCS01311570.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01315460.1,221,436,+,IgC1_MHC_I_alpha3,AXCS01315460.1_1:1,AXCS01315460.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01316003.1,332,442,+,IgC1_MHC_I_alpha3,AXCS01316003.1_1:1,AXCS01316003.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01318319.1,2,157,+,IgC1_MHC_I_alpha3,AXCS01318319.1_1:1,AXCS01318319.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01328492.1,393,605,-,MHC_I,AXCS01328492.1_1:1,AXCS01328492.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01340415.1,569,841,+,MHC_I,AXCS01340415.1_1:1,AXCS01340415.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01343311.1,904,987,+,MHC_I,AXCS01343311.1_1:1,AXCS01343311.1_1:1,NA,NA,FALSE
MHCI,bmr,AXCS01346778.1,1029,1154,+,IgC1_MHC_I_alpha3,103728353,LOC103728353,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,98478,98609,+,MHC_I,KL199232.1_1:1,KL199232.1_1:1,NA,NA,FALSE
MHCI,bmr,KL199232.1,102429,102747,+,MHC_I,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,102962,103171,+,MHC_I,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,103763,104032,+,IgC1_MHC_I_alpha3,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,111896,112184,+,MHC_I,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,112935,113224,+,MHC_I,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,113724,114053,+,IgC1_MHC_I_alpha3,103752319,LOC103752319,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,117527,117937,+,MHC_I,103752329,LOC103752329,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,117960,118226,+,MHC_I,103752329,LOC103752329,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,118471,118881,+,IgC1_MHC_I_alpha3,103752329,LOC103752329,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,166125,166397,+,MHC_I,ENSNGAG00000020692;103752347,NA;LOC103752347,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,166628,166894,+,MHC_I,ENSNGAG00000020692;103752347,NA;LOC103752347,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199232.1,168352,168710,+,IgC1_MHC_I_alpha3,ENSNGAG00000020692;103752347,NA;LOC103752347,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199389.1,1788650,1788849,+,MHC_I,KL199389.1_1:1,KL199389.1_1:1,NA,NA,FALSE
MHCI,bmr,KL199641.1,5099,5302,+,MHC_I,103729790,LOC103729790,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,12447,12536,+,IgC1_MHC_H-2_TLA,103729790,LOC103729790,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,12538,12747,+,IgC1_MHC_I_alpha3,103729790,LOC103729790,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,41360,41623,-,MHC_I,103729790,LOC103729790,NA,NA,FALSE
MHCI,bmr,KL199641.1,41835,42155,+,MHC_I,103729790,LOC103729790,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,43858,44214,+,IgC1_MHC_I_alpha3,103729790,LOC103729790,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,54212,54472,+,MHC_I,103729791,LOC103729791,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,54813,55069,+,MHC_I,103729791,LOC103729791,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,55704,56066,+,IgC1_MHC_I_alpha3,103729791,LOC103729791,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,63458,63657,+,MHC_I,103729791,LOC103729791,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,67050,67322,+,MHC_I,ENSNGAG00000017876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,67541,67837,+,MHC_I,ENSNGAG00000017876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,68593,68877,+,IgC1_MHC_I_alpha3,ENSNGAG00000017876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,74010,74264,+,MHC_I,103729792,LOC103729792,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,74527,74775,+,MHC_I,103729792,LOC103729792,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,76586,76874,+,IgC1_MHC_I_alpha3,103729792,LOC103729792,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,90342,90611,+,MHC_I,103729783,LOC103729783,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,90742,91071,+,MHC_I,103729783,LOC103729783,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,92988,93275,+,IgC1_MHC_I_alpha3,ENSNGAG00000015949;103729783,NA;LOC103729783,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,105675,105740,+,MHC_I,103729793,LOC103729793,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,105787,106614,+,IgC1_MHC_I_alpha3,103729793,LOC103729793,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,135302,135574,+,MHC_I,103729784,LOC103729784,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,135800,136069,+,MHC_I,103729784,LOC103729784,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199641.1,136791,137165,+,IgC1_MHC_I_alpha3,103729784,LOC103729784,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199786.1,2746272,2746496,+,IgC1_MHC_Ib_Qa-1,KL199786.1_1:1,KL199786.1_1:1,NA,NA,FALSE
MHCI,bmr,KL199996.1,4522,4713,-,MHC_I,KL199996.1_1:1,KL199996.1_1:1,NA,NA,FALSE
MHCI,bmr,KL199996.1,9543,9855,-,IgC1_MHC_I_alpha3,103731141,LOC103731141,NA,NA,FALSE
MHCI,bmr,KL199996.1,11273,11462,-,MHC_I,103731141,LOC103731141,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199996.1,12208,12480,-,MHC_I,103731141,LOC103731141,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199996.1,22805,23134,-,IgC1_MHC_I_alpha3,103731142,LOC103731142,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199996.1,23270,23536,-,MHC_I,103731142,LOC103731142,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL199996.1,23750,24025,-,MHC_I,103731142,LOC103731142,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL201204.1,4757,5095,-,IgC1_MHC_I_alpha3,KL201204.1_1:1,KL201204.1_1:1,NA,NA,FALSE
MHCI,bmr,KL201251.1,277244,277538,-,IgC1_MHC_I_alpha3,KL201251.1_1:1,KL201251.1_1:1,NA,NA,FALSE
MHCI,bmr,KL201251.1,278036,278254,-,MHC_I,KL201251.1_1:1,KL201251.1_1:1,NA,NA,FALSE
MHCI,bmr,KL201251.1,278559,278783,-,MHC_I,KL201251.1_1:1,KL201251.1_1:1,NA,NA,FALSE
MHCI,bmr,KL201755.1,577,915,-,IgC1_MHC_I_alpha3,103738688,LOC103738688,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL201755.1,1388,1654,-,MHC_I,103738688,LOC103738688,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL201755.1,1885,2160,-,MHC_I,103738688,LOC103738688,pseudogene,aa_OG0000000,TRUE
MHCI,bmr,KL202166.1,10518,10790,+,MHC_I,108489996,LOC108489996,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL202166.1,36529,36798,+,MHC_I,ENSNGAG00000000497,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL202166.1,38799,39074,+,MHC_I,ENSNGAG00000000497,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL202166.1,39555,39908,+,IgC1_MHC_I_alpha3,ENSNGAG00000000497,H2-T24,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL202972.1,2350024,2350200,+,MHC_I,KL202972.1_1:1,KL202972.1_1:1,NA,NA,FALSE
MHCI,bmr,KL203124.1,4062,4466,+,IgC1_MHC_I_alpha3,108491469,LOC108491469,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL203131.1,1422,1694,-,MHC_I,103744717,LOC103744717,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL203945.1,5207680,5207841,-,IgC1_MHC_Ia_H-2Kb,KL203945.1_1:1,KL203945.1_1:1,NA,NA,FALSE
MHCI,bmr,KL203976.1,202306,202581,+,MHC_I,ENSNGAG00000022255,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL203976.1,202808,203083,+,MHC_I,ENSNGAG00000022255,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL203976.1,203735,204031,+,IgC1_MHC_I_alpha3,ENSNGAG00000022255,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL204344.1,3253,3618,-,IgC1_MHC_I_alpha3,103749145,LOC103749145,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL204344.1,4620,4886,-,MHC_I,103749145,LOC103749145,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL204344.1,5117,5389,-,MHC_I,103749145,LOC103749145,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL204348.1,2253561,2253938,-,IgC1_MHC_I_alpha3,KL204348.1_1:1,KL204348.1_1:1,NA,NA,FALSE
MHCI,bmr,KL204348.1,2255635,2255853,-,MHC_I,KL204348.1_1:1,KL204348.1_1:1,NA,NA,FALSE
MHCI,bmr,KL204411.1,4182952,4183265,-,IgC1_MHC_I_alpha3,KL204411.1_1:1,KL204411.1_1:1,NA,NA,FALSE
MHCI,bmr,KL205009.1,2775,3113,-,IgC1_MHC_I_alpha3,103752528,LOC103752528,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL205009.1,3610,3876,-,MHC_I,103752528,LOC103752528,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL205009.1,4091,4363,-,MHC_I,103752528,LOC103752528,mRNA,aa_OG0000000,TRUE
MHCI,bmr,KL205009.1,28260,28544,-,IgC1_MHC_I_alpha3,ENSNGAG00000001321,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205009.1,29117,29386,-,MHC_I,ENSNGAG00000001321,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205009.1,29588,29866,-,MHC_I,ENSNGAG00000001321,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205017.1,810609,810875,+,MHC_I,ENSNGAG00000021404,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205017.1,811342,811581,+,MHC_I,ENSNGAG00000021404,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205017.1,813013,813303,+,IgC1_MHC_I_alpha3,ENSNGAG00000021404,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,9722,9997,-,IgC1_MHC_I_alpha3,ENSNGAG00000001365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,11446,11712,-,MHC_I,ENSNGAG00000001365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,11920,12192,-,MHC_I,ENSNGAG00000001365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,27170,27484,-,IgC1_MHC_I_alpha3,ENSNGAG00000010302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,28244,28489,-,MHC_I,ENSNGAG00000010302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bmr,KL205238.1,28703,28966,-,MHC_I,ENSNGAG00000010302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,1,150399500,150399679,+,IgC1_MHC_Ib_HLA-H,1_1:1,1_1:1,NA,NA,FALSE
MHCI,rabbit,7,126408082,126408408,+,MHC_I,7_1:1,7_1:1,NA,NA,FALSE
MHCI,rabbit,7,126408416,126408708,+,IgC1_MHC_Ia_HLA-B,7_1:1,7_1:1,NA,NA,FALSE
MHCI,rabbit,9,3862670,3862801,-,IgC1_MHC_Ib_HLA-H,9_1:1,9_1:1,NA,NA,FALSE
MHCI,rabbit,11,32001671,32002084,-,IgC1_MHC_I_alpha3,ENSOCUG00000023680,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,11,32003463,32003729,-,MHC_I,ENSOCUG00000023680,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,11,32005011,32005280,-,MHC_I,ENSOCUG00000023680,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20209819,20210124,-,IgC1_MHC_I_alpha3,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20210655,20210921,-,MHC_I,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20211152,20211517,-,MHC_I,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20242671,20242946,+,MHC_I,ENSOCUG00000011016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20243178,20243444,+,MHC_I,ENSOCUG00000011016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20244226,20244531,+,IgC1_MHC_I_alpha3,ENSOCUG00000011016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20282297,20282602,-,IgC1_MHC_I_alpha3,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20283184,20283450,-,MHC_I,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20283677,20283961,-,MHC_I,ENSOCUG00000010972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,20300336,20300647,-,IgC1_MHC_I_alpha3,ENSOCUG00000013304;100339318,NA;LOC100339318,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rabbit,12,20301271,20301552,-,MHC_I,ENSOCUG00000013304;100339318,NA;LOC100339318,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rabbit,12,20301835,20302177,-,MHC_I,ENSOCUG00000013304;100339318,NA;LOC100339318,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,rabbit,12,20333446,20333751,-,IgC1_MHC_I_alpha3,100339821,LOC100339821,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,20333911,20334244,-,MHC_I,100339821,LOC100339821,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,20338245,20338507,+,MHC_I,103345076,LOC103345076,ncRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22308661,22308945,+,MHC_I,ENSOCUG00000008993;100348995,NA;LOC100348995,protein_coding;mRNA,aa_OG0000000;aa_OG0027976,TRUE
MHCI,rabbit,12,22309213,22309467,+,MHC_I,ENSOCUG00000006557;100348995,NA;LOC100348995,protein_coding;mRNA,aa_OG0000000;aa_OG0027976,TRUE
MHCI,rabbit,12,22310029,22310337,+,IgC1_MHC_I_alpha3,ENSOCUG00000006557;100348995,NA;LOC100348995,protein_coding;mRNA,aa_OG0000000;aa_OG0027976,TRUE
MHCI,rabbit,12,22405649,22405951,-,IgC1_MHC_I_alpha3,ENSOCUG00000010984,NA,protein_coding,aa_OG0027976,TRUE
MHCI,rabbit,12,22406501,22406755,-,MHC_I,ENSOCUG00000010984,NA,protein_coding,aa_OG0027976,TRUE
MHCI,rabbit,12,22407377,22407661,-,MHC_I,ENSOCUG00000010984,NA,protein_coding,aa_OG0027976,TRUE
MHCI,rabbit,12,22460204,22460290,+,MHC_I,12_1:1,12_1:1,NA,NA,FALSE
MHCI,rabbit,12,22474812,22475317,+,MHC_I,100349247,LOC100349247,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22475489,22475755,+,MHC_I,ENSOCUG00000008993;100349247,NA;LOC100349247,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22476621,22476962,+,IgC1_MHC_I_alpha3,ENSOCUG00000008993;100349247,NA;LOC100349247,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22544767,22545081,+,MHC_I,ENSOCUG00000008993,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,22545251,22545517,+,MHC_I,ENSOCUG00000008993,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,22546066,22546389,+,IgC1_MHC_I_alpha3,ENSOCUG00000008993,NA,protein_coding,aa_OG0000000,TRUE
MHCI,rabbit,12,22573284,22573556,+,MHC_I,100349757,LOC100349757,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22574732,22574980,+,MHC_I,100349757,LOC100349757,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,22575461,22575880,+,IgC1_MHC_I_alpha3,100349757,LOC100349757,mRNA,aa_OG0000000,TRUE
MHCI,rabbit,12,140113976,140114191,-,MHC_I,12_2:1,12_2:1,NA,NA,FALSE
MHCI,rabbit,15,66183020,66183340,+,IgC1_MHC_Ia_HLA-F,15_1:1,15_1:1,NA,NA,FALSE
MHCI,rabbit,GL018985,95482,95664,-,IgC1_MHC_Ib_HLA-H,GL018985_1:1,GL018985_1:1,NA,NA,FALSE
MHCI,rabbit,NW_003159386.1,241937,242203,-,MHC_I,NW_003159386.1_1:1,NW_003159386.1_1:1,NA,NA,FALSE
MHCI,rabbit,NW_003159386.1,244526,244807,-,MHC_I,NW_003159386.1_1:2,NW_003159386.1_1:2,NA,NA,FALSE
MHCI,rabbit,NW_003159612.1,95482,95664,-,IgC1_MHC_Ib_HLA-H,NW_003159612.1_1:1,NW_003159612.1_1:1,NA,NA,FALSE
MHCI,rabbit,NW_003159782.1,73321,73917,+,MHC_I,NW_003159782.1_1:1,NW_003159782.1_1:1,NA,NA,FALSE
MHCI,tasmanian.devil,GL856884.1,747458,747772,-,IgC1_MHC_I_alpha3,ENSSHAG00000010776,SAHAI-12,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL856884.1,747992,748306,-,MHC_I,ENSSHAG00000010776,SAHAI-12,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL856884.1,748487,748777,-,MHC_I,ENSSHAG00000010776,SAHAI-12,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857227.1,25329,25622,-,IgC1_MHC_I_alpha3,ENSSHAG00000001982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857227.1,25911,26189,-,MHC_I,ENSSHAG00000001982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857227.1,26406,26684,-,MHC_I,ENSSHAG00000001982,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857352.1,55783,56010,-,IgC1_MHC_I_alpha3,GL857352.1_1:1,GL857352.1_1:1,NA,NA,FALSE
MHCI,tasmanian.devil,GL857536.1,46572,46850,+,MHC_I,ENSSHAG00000002942;100926320,NA;LOC100926320,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857536.1,47058,47327,+,MHC_I,ENSSHAG00000002942;100926320,NA;LOC100926320,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL857536.1,48072,48404,+,IgC1_MHC_I_alpha3,ENSSHAG00000002942;100926320,NA;LOC100926320,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL861423.1,679,942,+,MHC_I,ENSSHAG00000000117,SAHAI-01,protein_coding,aa_OG0000000,TRUE
MHCI,tasmanian.devil,GL861423.1,1162,1476,+,IgC1_MHC_I_alpha3,ENSSHAG00000000117,SAHAI-01,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000023.1,18421636,18421914,-,IgC1_MHC_I_alpha3,MSTS01000023.1_1:1,MSTS01000023.1_1:1,NA,NA,FALSE
MHCI,koala,MSTS01000053.1,10033521,10034015,+,IgC1_MHC_I_alpha3,ENSPCIG00000022189;110213304,NA;LOC110213304,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3817303,3817632,-,IgC1_MHC_I_alpha3,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3817828,3818091,-,MHC_I,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3818268,3818552,-,MHC_I,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3855938,3856237,-,IgC1_MHC_I_alpha3,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3856442,3856711,-,MHC_I,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3856890,3857174,-,MHC_I,ENSPCIG00000036308,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3885972,3886228,+,MHC_I,ENSPCIG00000027982;110223020,NA;LOC110223020,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3886403,3886672,+,MHC_I,ENSPCIG00000027982;110223020,NA;LOC110223020,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3886837,3887204,+,IgC1_MHC_I_alpha3,110223020,LOC110223020,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3932506,3932790,+,MHC_I,ENSPCIG00000027983;110223003,NA;LOC110223003,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3932936,3933205,+,MHC_I,ENSPCIG00000027983;110223003,NA;LOC110223003,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000129.1,3933442,3933735,+,IgC1_MHC_I_alpha3,ENSPCIG00000027983;110223003,NA;LOC110223003,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,396325,396450,+,MHC_I,MSTS01000255.1_1:1,MSTS01000255.1_1:1,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,396462,396578,+,MHC_I,MSTS01000255.1_1:1,MSTS01000255.1_1:1,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,404265,404549,+,MHC_I,ENSPCIG00000036230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,404786,405052,+,MHC_I,ENSPCIG00000036230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,405898,406230,+,IgC1_MHC_I_alpha3,ENSPCIG00000036230,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,474552,474836,+,IgC1_MHC_I_alpha3,110199353,LOC110199353,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,549275,549628,+,MHC_I,ENSPCIG00000034822;110199356,NA;LOC110199356,protein_coding;pseudogene,aa_OG0034751;aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,549836,549970,+,MHC_I,110199356,LOC110199356,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,549981,550061,+,MHC_I,110199356,LOC110199356,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,550317,550580,+,IgC1_MHC_I_alpha3,110199356,LOC110199356,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000255.1,619934,620035,+,MHC_I,110199329,LOC110199329,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,620379,620642,+,MHC_I,110199329,LOC110199329,mRNA,aa_OG0035778,TRUE
MHCI,koala,MSTS01000255.1,620826,621131,+,IgC1_MHC_I_alpha3,110199329,LOC110199329,mRNA,aa_OG0035778,TRUE
MHCI,koala,MSTS01000255.1,764648,764929,+,MHC_I,ENSPCIG00000001719,NA,protein_coding,aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,765146,765424,+,MHC_I,ENSPCIG00000001719,NA,protein_coding,aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,765767,766063,+,IgC1_MHC_I_alpha3,ENSPCIG00000001719,NA,protein_coding,aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,839344,839621,+,MHC_I,110199419,LOC110199419,pseudogene,aa_OG0000000;aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,839850,840128,+,MHC_I,110199419,LOC110199419,pseudogene,aa_OG0000000;aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,840475,840774,+,IgC1_MHC_I_alpha3,110199419,LOC110199419,pseudogene,aa_OG0000000;aa_OG0023775,TRUE
MHCI,koala,MSTS01000255.1,1591672,1591965,-,IgC1_MHC_I_alpha3,MSTS01000255.1_3:1,MSTS01000255.1_3:1,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,2429798,2430073,-,IgC1_MHC_I_alpha3,MSTS01000255.1_3:2,MSTS01000255.1_3:2,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,2430471,2430713,-,MHC_I,MSTS01000255.1_3:2,MSTS01000255.1_3:2,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,2500286,2500540,-,MHC_I,ENSPCIG00000017569,NA,protein_coding,aa_OG0030909,TRUE
MHCI,koala,MSTS01000255.1,2537640,2537849,+,MHC_I,MSTS01000255.1_4:1,MSTS01000255.1_4:1,NA,NA,FALSE
MHCI,koala,MSTS01000255.1,2540313,2540636,+,IgC1_MHC_I_alpha3,MSTS01000255.1_4:2,MSTS01000255.1_4:2,NA,NA,FALSE
MHCI,koala,MSTS01000263.1,3140822,3141133,-,IgC1_MHC_I_alpha3,ENSPCIG00000026391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000263.1,3141324,3141602,-,MHC_I,ENSPCIG00000026391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000263.1,3141766,3142050,-,MHC_I,ENSPCIG00000026391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000314.1,2330325,2330612,+,MHC_I,ENSPCIG00000036877;110201638,NA;LOC110201638,protein_coding;pseudogene,aa_OG0028177;aa_OG0000000,TRUE
MHCI,koala,MSTS01000314.1,2330729,2331001,+,MHC_I,ENSPCIG00000036877;110201638,NA;LOC110201638,protein_coding;pseudogene,aa_OG0028177;aa_OG0000000,TRUE
MHCI,koala,MSTS01000314.1,2331191,2331488,+,IgC1_MHC_I_alpha3,ENSPCIG00000036877;110201638,NA;LOC110201638,protein_coding;pseudogene,aa_OG0028177;aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1562446,1562724,+,MHC_I,ENSPCIG00000010065,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1562922,1563191,+,MHC_I,ENSPCIG00000010065,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1563382,1563684,+,IgC1_MHC_I_alpha3,ENSPCIG00000010065,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1589140,1589433,+,MHC_I,ENSPCIG00000010065;110202415,NA;LOC110202415,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1589622,1589894,+,MHC_I,ENSPCIG00000010065;110202415,NA;LOC110202415,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1590100,1590399,+,IgC1_MHC_I_alpha3,ENSPCIG00000010065;110202415,NA;LOC110202415,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1624057,1624335,+,MHC_I,ENSPCIG00000032447;110202407,NA;LOC110202407,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1624517,1624791,+,MHC_I,110202407,LOC110202407,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000347.1,1624998,1625269,+,IgC1_MHC_I_alpha3,110202407,LOC110202407,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,12654,12965,-,IgC1_MHC_I_alpha3,ENSPCIG00000035365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,13153,13431,-,MHC_I,ENSPCIG00000035365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,13593,13883,-,MHC_I,ENSPCIG00000035365,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,35576,35871,-,IgC1_MHC_I_alpha3,110203127,LOC110203127,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,36060,36215,-,MHC_I,110203127,LOC110203127,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,36266,36310,-,MHC_I,110203127,LOC110203127,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000381.1,36469,36744,-,MHC_I,110203127,LOC110203127,pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000412.1,370380,370763,-,IgC1_MHC_I_alpha3,ENSPCIG00000026958;110203407,NA;LOC110203407,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000412.1,370995,371351,-,MHC_I,ENSPCIG00000026958;110203407,NA;LOC110203407,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000412.1,371371,371640,-,MHC_I,ENSPCIG00000026958;110203407,NA;LOC110203407,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000454.1,95693,95992,-,IgC1_MHC_I_alpha3,ENSPCIG00000019340,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000454.1,96189,96452,-,MHC_I,ENSPCIG00000019340,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000454.1,96662,96937,-,MHC_I,ENSPCIG00000019340,NA,protein_coding,aa_OG0000000,TRUE
MHCI,koala,MSTS01000778.1,12777,13076,-,IgC1_MHC_I_alpha3,ENSPCIG00000036283;110204273,NA;LOC110204273,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000778.1,13266,13802,-,MHC_I,ENSPCIG00000036283;110204273,NA;LOC110204273,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01000778.1,13808,13945,-,MHC_I,ENSPCIG00000036283;110204273,NA;LOC110204273,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01001120.1,814,1109,-,IgC1_MHC_I_alpha3,ENSPCIG00000036302;110204501,NA;LOC110204501,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01001120.1,1296,1568,-,MHC_I,ENSPCIG00000036302;110204501,NA;LOC110204501,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,koala,MSTS01001120.1,1685,1972,-,MHC_I,ENSPCIG00000036302;110204501,NA;LOC110204501,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,armadillo,AAGV03011202.1,539,832,-,IgC1_MHC_I_alpha3,ENSDNOG00000033401;101427325,NA;LOC101427325,protein_coding;mRNA,aa_OG0028229,TRUE
MHCI,armadillo,AAGV03011202.1,946,1221,-,MHC_I,ENSDNOG00000033401;101427325,NA;LOC101427325,protein_coding;mRNA,aa_OG0028229,TRUE
MHCI,armadillo,AAGV03014233.1,1050,1316,+,MHC_I,101439899,LOC101439899,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,AAGV03029475.1,967,1251,+,MHC_I,101428226,LOC101428226,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,AAGV03060970.1,1203,1523,-,IgC1_MHC_I_alpha3,101415506,LOC101415506,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH561790.1,79660,79890,+,MHC_I,ENSDNOG00000035973;101447885,NA;LOC101447885,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH561790.1,80024,80449,+,MHC_I,ENSDNOG00000035973;101447885,NA;LOC101447885,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH561790.1,80560,80880,+,IgC1_MHC_I_alpha3,ENSDNOG00000035973;101447885,NA;LOC101447885,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH562070.1,51216,51500,-,IgC1_MHC_I_alpha3,JH562070.1_1:1,JH562070.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH562070.1,51613,51720,-,MHC_I,JH562070.1_1:1,JH562070.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH562192.1,59791,60099,-,IgC1_MHC_I_alpha3,ENSDNOG00000034149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,60217,60498,-,MHC_I,ENSDNOG00000034149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,60756,60971,-,MHC_I,ENSDNOG00000034149,NA,NA,NA,FALSE
MHCI,armadillo,JH562192.1,61208,61474,-,MHC_I,ENSDNOG00000034149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,93809,94081,+,MHC_I,ENSDNOG00000043137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,94513,94782,+,MHC_I,ENSDNOG00000043137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,94890,95222,+,IgC1_MHC_I_alpha3,ENSDNOG00000043137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,329177,329497,-,IgC1_MHC_I_alpha3,101425105,LOC101425105,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,330188,330462,-,MHC_I,101425105,LOC101425105,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,330710,330981,-,MHC_I,101425105,LOC101425105,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,360403,360732,-,IgC1_MHC_I_alpha3,ENSDNOG00000035952,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,361286,361558,-,MHC_I,ENSDNOG00000035952,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,361734,362000,-,MHC_I,ENSDNOG00000035952,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,382730,383050,-,IgC1_MHC_I_alpha3,ENSDNOG00000048662,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,383163,383468,-,MHC_I,ENSDNOG00000048662,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,383745,384017,-,MHC_I,ENSDNOG00000048662,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,472854,473174,-,IgC1_MHC_I_alpha3,ENSDNOG00000039820;101427038,NA;LOC101427038,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,473724,473996,-,MHC_I,ENSDNOG00000039820;101427038,NA;LOC101427038,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,474234,474518,-,MHC_I,ENSDNOG00000039820;101427038,NA;LOC101427038,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,564494,564774,-,IgC1_MHC_I_alpha3,ENSDNOG00000037955;101427472,NA;LOC101427472,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,564888,565163,-,MHC_I,ENSDNOG00000037955;101427472,NA;LOC101427472,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,565517,565597,-,MHC_I,ENSDNOG00000037955;101427472,NA;LOC101427472,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,565603,565746,-,MHC_I,ENSDNOG00000037955;101427472,NA;LOC101427472,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH562192.1,612373,612693,-,IgC1_MHC_I_alpha3,ENSDNOG00000000538;101432742,NA;LOC101432742,protein_coding;mRNA,aa_OG0035866;aa_OG0000000,TRUE
MHCI,armadillo,JH562192.1,613246,613449,-,MHC_I,ENSDNOG00000000538;101432742,NA;LOC101432742,protein_coding;mRNA,aa_OG0035866;aa_OG0000000,TRUE
MHCI,armadillo,JH562413.1,13512,13715,+,MHC_I,JH562413.1_1:1,JH562413.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH562413.1,13952,14089,+,MHC_I,JH562413.1_1:1,JH562413.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH562851.1,2074,2367,-,IgC1_MHC_I_alpha3,ENSDNOG00000043469;101415026,NA;LOC101415026,protein_coding;mRNA,aa_OG0035830,TRUE
MHCI,armadillo,JH562988.1,611,994,-,IgC1_MHC_I_alpha3,ENSDNOG00000005865,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563037.1,11930,12223,-,IgC1_MHC_I_alpha3,ENSDNOG00000012399;105744171,NA;LOC105744171,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH563037.1,12349,12597,-,MHC_I,105744171,LOC105744171,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH563062.1,64885,65181,-,IgC1_MHC_I_alpha3,ENSDNOG00000041544,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563062.1,65300,65566,-,MHC_I,ENSDNOG00000041544,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563062.1,65857,66129,-,MHC_I,ENSDNOG00000041544,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563351.1,335535,335780,-,MHC_I,JH563351.1_1:1,JH563351.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH563617.1,8802,9071,+,MHC_I,ENSDNOG00000045645;101428513,NA;LOC101428513,protein_coding;mRNA,aa_OG0028229,TRUE
MHCI,armadillo,JH563617.1,9194,9520,+,IgC1_MHC_I_alpha3,ENSDNOG00000045645;101428513,NA;LOC101428513,protein_coding;mRNA,aa_OG0028229,TRUE
MHCI,armadillo,JH563915.1,813557,813886,-,IgC1_MHC_I_alpha3,ENSDNOG00000039972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563915.1,813990,814265,-,MHC_I,ENSDNOG00000039972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH563915.1,814589,814855,-,MHC_I,ENSDNOG00000039972,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH564320.1,25389,25676,-,IgC1_MHC_I_alpha3,ENSDNOG00000032318;101419419,NA;LOC101419419,protein_coding;mRNA,aa_OG0028230;aa_OG0035830,TRUE
MHCI,armadillo,JH564320.1,25793,26068,-,MHC_I,ENSDNOG00000032318;101419419,NA;LOC101419419,protein_coding;mRNA,aa_OG0028230;aa_OG0035830,TRUE
MHCI,armadillo,JH564320.1,132718,133050,-,IgC1_MHC_I_alpha3,ENSDNOG00000032318;101420165,NA;LOC101420165,protein_coding;pseudogene,aa_OG0028230;aa_OG0028229,TRUE
MHCI,armadillo,JH564320.1,133151,133426,-,MHC_I,ENSDNOG00000032318;101420165,NA;LOC101420165,protein_coding;pseudogene,aa_OG0028230;aa_OG0028229,TRUE
MHCI,armadillo,JH564320.1,133694,133977,-,MHC_I,ENSDNOG00000032318;101420165,NA;LOC101420165,protein_coding;pseudogene,aa_OG0028230;aa_OG0028229,TRUE
MHCI,armadillo,JH565115.1,36985,37305,-,IgC1_MHC_I_alpha3,ENSDNOG00000048302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565115.1,37418,37693,-,MHC_I,ENSDNOG00000048302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565115.1,37953,38225,-,MHC_I,ENSDNOG00000048302,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565197.1,1175,1480,-,IgC1_MHC_I_alpha3,ENSDNOG00000040882,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565197.1,2007,2306,-,MHC_I,ENSDNOG00000040882,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565197.1,2554,2838,-,MHC_I,ENSDNOG00000040882,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH565934.1,623,925,-,MHC_I,111758663,LOC111758663,mRNA,rna_OG0159682,TRUE
MHCI,armadillo,JH566744.1,23698,23925,+,IgC1_MHC_Ib_HLA-E,JH566744.1_1:1,JH566744.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH567345.1,574,840,+,MHC_I,ENSDNOG00000037240;101427987,NA;LOC101427987,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH567345.1,1107,1382,+,MHC_I,ENSDNOG00000037240;101427987,NA;LOC101427987,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH567345.1,1495,1752,+,IgC1_MHC_I_alpha3,ENSDNOG00000037240;101427987,NA;LOC101427987,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH567741.1,962426,962710,+,MHC_I,ENSDNOG00000043018,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH567741.1,962980,963249,+,MHC_I,ENSDNOG00000043018,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH567741.1,963372,963689,+,IgC1_MHC_I_alpha3,ENSDNOG00000043018,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH567909.1,76252,76566,-,IgC1_MHC_I_alpha3,ENSDNOG00000043578,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567909.1,76679,76954,-,MHC_I,ENSDNOG00000043578,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567909.1,77777,78043,-,MHC_I,ENSDNOG00000043578,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567956.1,1618,1821,+,IgC1_MHC_I_alpha3,JH567956.1_1:1,JH567956.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH567956.1,24258,24578,-,IgC1_MHC_I_alpha3,ENSDNOG00000031511,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567956.1,24691,24966,-,MHC_I,ENSDNOG00000031511,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,5691,5963,+,MHC_I,ENSDNOG00000030850,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,6199,6471,+,MHC_I,ENSDNOG00000030850,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,6998,7318,+,IgC1_MHC_I_alpha3,ENSDNOG00000030850,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,100933,101205,+,MHC_I,ENSDNOG00000031994,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,101442,101708,+,MHC_I,ENSDNOG00000031994,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH567976.1,102403,102492,+,IgC1_MHC_I_alpha3,ENSDNOG00000031994,NA,NA,NA,FALSE
MHCI,armadillo,JH568439.1,36267,36533,+,MHC_I,101430506,LOC101430506,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH568496.1,30000,30320,-,IgC1_MHC_I_alpha3,ENSDNOG00000049654,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH568496.1,30865,31131,-,MHC_I,ENSDNOG00000049654,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH568496.1,31365,31636,-,MHC_I,ENSDNOG00000049654,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH568564.1,4503,4823,-,IgC1_MHC_I_alpha3,ENSDNOG00000048867;101411165,NA;LOC101411165,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH568564.1,4942,5211,-,MHC_I,ENSDNOG00000048867;101411165,NA;LOC101411165,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH568564.1,5481,5741,-,MHC_I,ENSDNOG00000048867;101411165,NA;LOC101411165,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH568930.1,33069,33349,-,MHC_I,ENSDNOG00000049205;101423175,NA;LOC101423175,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH568930.1,33694,33963,-,MHC_I,ENSDNOG00000049205;101423175,NA;LOC101423175,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH569095.1,3335189,3335347,-,IgC1_MHC_Ia_HLA-B,JH569095.1_1:1,JH569095.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH569095.1,3335504,3335632,-,MHC_I,JH569095.1_1:1,JH569095.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH569663.1,7684,7980,-,IgC1_MHC_I_alpha3,ENSDNOG00000046555;101442233,NA;LOC101442233,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH569663.1,8104,8364,-,MHC_I,ENSDNOG00000046555;101442233,NA;LOC101442233,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH569663.1,8702,8969,-,MHC_I,ENSDNOG00000046555;101442233,NA;LOC101442233,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH569796.1,1217515,1217892,-,MHC_I,ENSDNOG00000025634,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH569796.1,1218124,1218396,-,MHC_I,ENSDNOG00000025634,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH569796.1,1392142,1392462,-,IgC1_MHC_I_alpha3,ENSDNOG00000039152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH569796.1,1392588,1392860,-,MHC_I,ENSDNOG00000039152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH569796.1,1393241,1393513,-,MHC_I,ENSDNOG00000039152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH569843.1,35928,36203,+,MHC_I,ENSDNOG00000043828;101422917,NA;LOC101422917,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH569843.1,36316,36636,+,IgC1_MHC_I_alpha3,ENSDNOG00000043828;101422917,NA;LOC101422917,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH569929.1,11359,11688,-,IgC1_MHC_I_alpha3,ENSDNOG00000041179;101428809,NA;LOC101428809,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH569929.1,11785,12060,-,MHC_I,ENSDNOG00000041179;101428809,NA;LOC101428809,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH569929.1,12348,12599,-,MHC_I,ENSDNOG00000041179;101428809,NA;LOC101428809,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH569934.1,173118,173554,+,MHC_I,ENSDNOG00000033266,NA,protein_coding,NA,TRUE
MHCI,armadillo,JH569934.1,173563,173700,+,MHC_I,ENSDNOG00000033266,NA,protein_coding,NA,TRUE
MHCI,armadillo,JH569934.1,174590,174906,+,IgC1_MHC_I_alpha3,ENSDNOG00000033266,NA,protein_coding,NA,TRUE
MHCI,armadillo,JH570002.1,8100,8420,-,IgC1_MHC_I_alpha3,ENSDNOG00000049540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570002.1,9389,9664,-,MHC_I,ENSDNOG00000049540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570002.1,10144,10416,-,MHC_I,ENSDNOG00000049540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570002.1,116165,116491,-,IgC1_MHC_I_alpha3,ENSDNOG00000038368,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570002.1,117000,117317,-,MHC_I,ENSDNOG00000038368,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570002.1,117662,117934,-,MHC_I,ENSDNOG00000038368,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570023.1,374524,374886,-,IgC1_MHC_I_alpha3,ENSDNOG00000040435,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570023.1,377003,377269,-,MHC_I,ENSDNOG00000040435,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570023.1,378538,378813,-,MHC_I,ENSDNOG00000040435,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570023.1,405895,406066,-,IgC1_MHC_I_alpha3,JH570023.1_1:1,JH570023.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH570037.1,755716,755981,+,MHC_I,ENSDNOG00000047497;101412139,NA;LOC101412139,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570037.1,756204,756479,+,MHC_I,ENSDNOG00000047497;101412139,NA;LOC101412139,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570037.1,756593,756898,+,IgC1_MHC_I_alpha3,ENSDNOG00000047497;101412139,NA;LOC101412139,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570135.1,12109,12429,-,IgC1_MHC_I_alpha3,ENSDNOG00000049312,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH570135.1,12560,12835,-,MHC_I,ENSDNOG00000049312,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH570135.1,13105,13389,-,MHC_I,ENSDNOG00000049312,NA,protein_coding,aa_OG0028230,TRUE
MHCI,armadillo,JH570217.1,29781,30047,+,MHC_I,ENSDNOG00000034434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570217.1,30311,30592,+,MHC_I,ENSDNOG00000034434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570217.1,30636,31019,+,IgC1_MHC_I_alpha3,ENSDNOG00000034434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH570225.1,9763,10035,+,MHC_I,ENSDNOG00000031455;101442557,NA;LOC101442557,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570225.1,10371,10640,+,MHC_I,ENSDNOG00000031455;101442557,NA;LOC101442557,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570225.1,10724,11017,+,IgC1_MHC_I_alpha3,ENSDNOG00000031455;101442557,NA;LOC101442557,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH570468.1,814520,815059,+,IgC1_MHC_I_alpha3,ENSDNOG00000046134;101439382,NA;LOC101439382,pseudogene,aa_OG0000000,TRUE
MHCI,armadillo,JH571377.1,4849,5142,-,IgC1_MHC_I_alpha3,ENSDNOG00000013339,NA,protein_coding,aa_OG0035809,TRUE
MHCI,armadillo,JH571377.1,9858,10055,+,MHC_I,ENSDNOG00000019999,NA,protein_coding,aa_OG0035809,TRUE
MHCI,armadillo,JH571377.1,10168,10451,+,IgC1_MHC_I_alpha3,ENSDNOG00000019999,NA,protein_coding,aa_OG0035809,TRUE
MHCI,armadillo,JH572052.1,2675149,2675382,+,MHC_I,ENSDNOG00000035833,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH572052.1,2679873,2680148,+,MHC_I,ENSDNOG00000035833,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH572052.1,2680637,2680997,+,IgC1_MHC_I_alpha3,ENSDNOG00000035833,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,18123,18443,-,IgC1_MHC_I_alpha3,ENSDNOG00000039296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,18995,19270,-,MHC_I,ENSDNOG00000039296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,19476,19742,-,MHC_I,ENSDNOG00000039296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,53807,54124,-,IgC1_MHC_I_alpha3,ENSDNOG00000045592,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,54637,54954,-,MHC_I,ENSDNOG00000045592,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,55190,55456,-,MHC_I,ENSDNOG00000045592,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,104603,105049,-,IgC1_MHC_1b_Qa-1b,ENSDNOG00000046118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,105600,105980,-,MHC_I,ENSDNOG00000046118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573039.1,106144,106410,-,MHC_I,ENSDNOG00000046118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH573191.1,11570,11832,-,IgC1_MHC_I_alpha3,101425641,LOC101425641,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH573191.1,11965,12240,-,MHC_I,101425641,LOC101425641,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH573191.1,12455,12514,-,MHC_I,101425641,LOC101425641,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH573191.1,12526,12738,-,MHC_I,101425641,LOC101425641,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,47301,47618,-,IgC1_MHC_I_alpha3,ENSDNOG00000034286;101418741,NA;LOC101418741,protein_coding;mRNA,aa_OG0000000;aa_OG0035830,TRUE
MHCI,armadillo,JH574318.1,47739,47990,-,MHC_I,ENSDNOG00000034286;101418741,NA;LOC101418741,protein_coding;mRNA,aa_OG0000000;aa_OG0035830,TRUE
MHCI,armadillo,JH574318.1,97861,98181,-,IgC1_MHC_I_alpha3,ENSDNOG00000031117,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,98693,99010,-,MHC_I,ENSDNOG00000031117,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,99365,99625,-,MHC_I,ENSDNOG00000031117,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,151079,151337,+,MHC_I,101419626,LOC101419626,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,151656,151925,+,MHC_I,101419626,LOC101419626,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,152053,152336,+,IgC1_MHC_I_alpha3,101419626,LOC101419626,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,252119,252391,+,MHC_I,101412468,LOC101412468,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,252531,252866,+,MHC_I,101412468,LOC101412468,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,253377,253667,+,IgC1_MHC_Ia_HLA-B,101412468,LOC101412468,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,253714,253995,+,IgC1_MHC_I_alpha3,101412468,LOC101412468,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,329287,329553,+,MHC_I,ENSDNOG00000034884,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,329843,330118,+,MHC_I,ENSDNOG00000034884,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,330234,330554,+,IgC1_MHC_I_alpha3,ENSDNOG00000034884,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,359428,359742,+,MHC_I,101422259,LOC101422259,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,359903,360178,+,MHC_I,101422259,LOC101422259,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,360735,361055,+,IgC1_MHC_I_alpha3,101422259,LOC101422259,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,397711,397977,+,MHC_I,101412902,LOC101412902,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,398198,398470,+,MHC_I,101412902,LOC101412902,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,399021,399341,+,IgC1_MHC_I_alpha3,101412902,LOC101412902,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,440303,440623,-,IgC1_MHC_I_alpha3,ENSDNOG00000043462,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,441172,441444,-,MHC_I,ENSDNOG00000043462,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,441693,442064,-,MHC_I,ENSDNOG00000043462,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,541433,541753,-,IgC1_MHC_I_alpha3,ENSDNOG00000040576,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,542296,542571,-,MHC_I,ENSDNOG00000040576,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,542727,542996,-,MHC_I,ENSDNOG00000040576,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH574318.1,584675,584974,-,IgC1_MHC_I_alpha3,ENSDNOG00000043904;101415824,NA;LOC101415824,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,585525,585800,-,MHC_I,ENSDNOG00000043904;101415824,NA;LOC101415824,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,586149,586421,-,MHC_I,ENSDNOG00000043904;101415824,NA;LOC101415824,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,640461,640781,-,IgC1_MHC_I_alpha3,ENSDNOG00000043904;101415391,NA;LOC101415391,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,641755,642024,-,MHC_I,ENSDNOG00000043904;101415391,NA;LOC101415391,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,642664,642867,-,MHC_I,ENSDNOG00000043904;101415391,NA;LOC101415391,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,677066,677374,-,IgC1_MHC_I_alpha3,ENSDNOG00000043904;101414493,NA;LOC101414493,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,678345,678620,-,MHC_I,ENSDNOG00000043904;101414493,NA;LOC101414493,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,678868,679140,-,MHC_I,ENSDNOG00000043904;101414493,NA;LOC101414493,protein_coding;mRNA,aa_OG0000000;aa_OG0028230,TRUE
MHCI,armadillo,JH574318.1,710345,710677,-,IgC1_MHC_I_alpha3,101424898,LOC101424898,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,711214,711483,-,MHC_I,101424898,LOC101424898,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH574318.1,711793,712082,-,MHC_I,101424898,LOC101424898,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH575041.1,44169,44585,-,IgC1_MHC_I_alpha3,ENSDNOG00000045484;101435448,NA;LOC101435448,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,45428,45700,-,MHC_I,ENSDNOG00000045484;101435448,NA;LOC101435448,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,45957,46223,-,MHC_I,ENSDNOG00000045484;101435448,NA;LOC101435448,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,154053,154373,-,IgC1_MHC_I_alpha3,101439564,LOC101439564,mRNA,aa_OG0035854,TRUE
MHCI,armadillo,JH575041.1,203117,203278,-,MHC_I,JH575041.1_1:1,JH575041.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH575041.1,251349,251765,-,IgC1_MHC_I_alpha3,ENSDNOG00000047239;101439987,NA;LOC101439987,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,252225,252500,-,MHC_I,ENSDNOG00000047239;101439987,NA;LOC101439987,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,252836,253108,-,MHC_I,ENSDNOG00000047239;101439987,NA;LOC101439987,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,363023,363325,-,IgC1_MHC_I_alpha3,ENSDNOG00000035861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,363837,364154,-,MHC_I,ENSDNOG00000035861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH575041.1,364420,364695,-,MHC_I,ENSDNOG00000035861,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576310.1,34820,35140,-,IgC1_MHC_I_alpha3,ENSDNOG00000047919,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576310.1,35250,35501,-,MHC_I,ENSDNOG00000047919,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576310.1,35797,36075,-,MHC_I,ENSDNOG00000047919,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576310.1,61162,61470,-,IgC1_MHC_I_alpha3,101424171,LOC101424171,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH576310.1,61596,61871,-,MHC_I,101424171,LOC101424171,pseudogene,aa_OG0028229,TRUE
MHCI,armadillo,JH576310.1,121629,121979,-,IgC1_MHC_I_alpha3,101424616,LOC101424616,pseudogene,aa_OG0005623,TRUE
MHCI,armadillo,JH576310.1,122491,122805,-,MHC_I,101424616,LOC101424616,pseudogene,aa_OG0005623,TRUE
MHCI,armadillo,JH576310.1,123011,123283,-,MHC_I,101424616,LOC101424616,pseudogene,aa_OG0005623,TRUE
MHCI,armadillo,JH576816.1,168710,168970,+,MHC_I,101424334,LOC101424334,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH576816.1,169216,169485,+,MHC_I,101424334,LOC101424334,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH576816.1,169571,169888,+,IgC1_MHC_I_alpha3,101424334,LOC101424334,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH576816.1,259609,259893,+,MHC_I,ENSDNOG00000005334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576816.1,260263,260565,+,MHC_I,ENSDNOG00000005334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH576816.1,260667,260999,+,IgC1_MHC_I_alpha3,ENSDNOG00000005334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH577267.1,6726,7042,-,IgC1_MHC_I_alpha3,JH577267.1_1:1,JH577267.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH578422.1,13881,14168,-,IgC1_MHC_I_alpha3,ENSDNOG00000036087,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH578422.1,14282,14557,-,MHC_I,ENSDNOG00000036087,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH578422.1,14847,15119,-,MHC_I,ENSDNOG00000036087,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH580290.1,629250,629516,-,IgC1_MHC_Ib_HLA-Cw3-4,101434481,LOC101434481,ncRNA,rna_OG0116560,TRUE
MHCI,armadillo,JH580290.1,799800,799910,-,MHC_I,JH580290.1_1:1,JH580290.1_1:1,NA,NA,FALSE
MHCI,armadillo,JH580290.1,822714,822818,+,MHC_I,JH580290.1_1:2,JH580290.1_1:2,NA,NA,FALSE
MHCI,armadillo,JH580290.1,822827,822946,+,MHC_I,JH580290.1_1:2,JH580290.1_1:2,NA,NA,FALSE
MHCI,armadillo,JH580409.1,62545,62673,-,MHC_I,101442654,LOC101442654,NA,NA,FALSE
MHCI,armadillo,JH580409.1,62684,62725,-,MHC_I,101442654,LOC101442654,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH580409.1,62984,63250,-,MHC_I,101442654,LOC101442654,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH580974.1,36320,36640,-,IgC1_MHC_I_alpha3,ENSDNOG00000042297,NA,protein_coding,aa_OG0035854,TRUE
MHCI,armadillo,JH580974.1,37153,37470,-,MHC_I,ENSDNOG00000042297,NA,protein_coding,aa_OG0035854,TRUE
MHCI,armadillo,JH580974.1,46447,46581,-,MHC_I,ENSDNOG00000042297,NA,NA,NA,FALSE
MHCI,armadillo,JH580974.1,46820,47092,-,MHC_I,ENSDNOG00000042297,NA,protein_coding,aa_OG0035854,TRUE
MHCI,armadillo,JH580974.1,94120,94269,-,IgC1_MHC_I_alpha3,101427913,LOC101427913,ncRNA,aa_OG0035830,TRUE
MHCI,armadillo,JH581392.1,54101,54373,+,MHC_I,ENSDNOG00000033283,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,54681,54956,+,MHC_I,ENSDNOG00000033283,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,55069,55398,+,IgC1_MHC_I_alpha3,ENSDNOG00000033283,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,145509,145733,+,MHC_I,ENSDNOG00000039358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,145827,146285,+,MHC_I,ENSDNOG00000039358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,146398,146718,+,IgC1_MHC_I_alpha3,ENSDNOG00000039358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,287796,288116,-,IgC1_MHC_I_alpha3,ENSDNOG00000043978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,288235,288504,-,MHC_I,ENSDNOG00000043978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581392.1,288781,289053,-,MHC_I,ENSDNOG00000043978,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH581621.1,12569,13105,+,MHC_I,ENSDNOG00000049331;101438484,NA;LOC101438484,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH581621.1,13218,13523,+,IgC1_MHC_I_alpha3,ENSDNOG00000049331;101438484,NA;LOC101438484,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH582433.1,4905,5294,-,IgC1_MHC_I_alpha3,101447161,LOC101447161,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,76097,76417,-,IgC1_MHC_I_alpha3,ENSDNOG00000034350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,76528,76803,-,MHC_I,ENSDNOG00000034350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,77085,77351,-,MHC_I,ENSDNOG00000034350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,96995,97327,-,IgC1_MHC_I_alpha3,101442840,LOC101442840,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,97447,97671,-,MHC_I,101442840,LOC101442840,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,98019,98285,-,MHC_I,101442840,LOC101442840,mRNA,aa_OG0000000,TRUE
MHCI,armadillo,JH583326.1,184546,184866,-,IgC1_MHC_I_alpha3,ENSDNOG00000038773;101443290,NA;LOC101443290,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH583326.1,184980,185282,-,MHC_I,ENSDNOG00000038773;101443290,NA;LOC101443290,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH583326.1,185572,185856,-,MHC_I,ENSDNOG00000038773;101443290,NA;LOC101443290,protein_coding;pseudogene,aa_OG0000000;aa_OG0028229,TRUE
MHCI,armadillo,JH583756.1,9945,10016,-,MHC_I,101417509,LOC101417509,mRNA,aa_OG0026331,TRUE
MHCI,armadillo,JH583756.1,10286,10570,-,MHC_I,101417509,LOC101417509,mRNA,aa_OG0026331,TRUE
MHCI,armadillo,JH584003.1,3091,3357,-,MHC_I,ENSDNOG00000032499;101437785,NA;LOC101437785,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,GeneScaffold_7028,805,985,+,MHC_I,ENSEEUG00000014647,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,GeneScaffold_7028,5069,5422,+,MHC_I,ENSEEUG00000014647,NA,NA,NA,FALSE
MHCI,hedgehog,GeneScaffold_7028,7234,7659,+,IgC1_MHC_I_alpha3,ENSEEUG00000014647,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804156.1,1162,1896,+,MHC_I,NW_006804156.1_1:1,NW_006804156.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804156.1,15869,16210,+,MHC_I,103114573,LOC103114573,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804156.1,16342,16662,+,MHC_I,103114573,LOC103114573,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804156.1,17119,17466,+,IgC1_MHC_I_alpha3,103114573,LOC103114573,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2409168,2409479,-,IgC1_MHC_I_alpha3,103117184,LOC103117184,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2415509,2415811,-,MHC_I,NW_006804251.1_1:1,NW_006804251.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804251.1,2424834,2425187,-,MHC_I,103117184,LOC103117184,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2454911,2455186,+,MHC_I,103117185,LOC103117185,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2455926,2456198,+,MHC_I,103117185,LOC103117185,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2456500,2456940,+,IgC1_MHC_I_alpha3,103117185,LOC103117185,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2473239,2473502,+,MHC_I,107522745,LOC107522745,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2475231,2475524,+,MHC_I,107522745,LOC107522745,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2477648,2477950,+,IgC1_MHC_I_alpha3,107522748,LOC107522748,ncRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2480924,2481220,+,MHC_I,NW_006804251.1_2:1,NW_006804251.1_2:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804251.1,2483953,2484225,+,IgC1_MHC_I_alpha3,NW_006804251.1_2:1,NW_006804251.1_2:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804251.1,2486080,2486334,+,MHC_I,NW_006804251.1_2:1,NW_006804251.1_2:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804251.1,2492918,2493196,+,MHC_I,103117186,LOC103117186,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2493598,2493885,+,MHC_I,103117186,LOC103117186,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2496754,2497041,+,IgC1_MHC_I_alpha3,103117186,LOC103117186,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2506680,2506955,+,MHC_I,103117188,LOC103117188,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2507198,2507482,+,MHC_I,103117188,LOC103117188,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804251.1,2508306,2508569,+,IgC1_MHC_I_alpha3,103117188,LOC103117188,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804331.1,225448,225528,+,IgC1_MHC_Ib_Qa-1,NW_006804331.1_1:1,NW_006804331.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804513.1,596428,596721,-,IgC1_MHC_I_alpha3,103121786,LOC103121786,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804513.1,597884,598159,-,MHC_I,103121786,LOC103121786,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804513.1,618250,618564,-,MHC_I,103121786,LOC103121786,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804513.1,1502107,1502322,-,MHC_I,NW_006804513.1_1:1,NW_006804513.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804513.1,1511391,1511714,-,MHC_I,NW_006804513.1_1:2,NW_006804513.1_1:2,NA,NA,FALSE
MHCI,hedgehog,NW_006804941.1,8711,8998,-,IgC1_MHC_I_alpha3,103126273,LOC103126273,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,9280,9546,-,MHC_I,103126273,LOC103126273,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,9896,10168,-,MHC_I,103126273,LOC103126273,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,13277,13585,-,MHC_I,NW_006804941.1_1:1,NW_006804941.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006804941.1,28071,28324,-,IgC1_MHC_Ia_H2Db_H2Ld,107523396,LOC107523396,pseudogene,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,63123,63428,-,IgC1_MHC_I_alpha3,103126247,LOC103126247,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,64153,64425,-,MHC_I,103126247,LOC103126247,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006804941.1,64658,64930,-,MHC_I,103126247,LOC103126247,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,71551,71829,+,MHC_I,103127729,LOC103127729,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,71961,72281,+,MHC_I,103127729,LOC103127729,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,72742,73089,+,IgC1_MHC_I_alpha3,103127729,LOC103127729,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,128272,128467,+,MHC_I,107523556,LOC107523556,pseudogene,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,129406,129684,+,IgC1_MHC_I_alpha3,107523556,LOC107523556,pseudogene,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,148537,148827,+,MHC_I,103127735,LOC103127735,pseudogene,aa_OG0000013,TRUE
MHCI,hedgehog,NW_006805280.1,148959,149252,+,MHC_I,103127735,LOC103127735,pseudogene,aa_OG0000013,TRUE
MHCI,hedgehog,NW_006805280.1,149739,150086,+,IgC1_MHC_I_alpha3,103127735,LOC103127735,pseudogene,aa_OG0000013,TRUE
MHCI,hedgehog,NW_006805280.1,186797,187093,+,MHC_I,103127735,LOC103127735,pseudogene,aa_OG0000013,TRUE
MHCI,hedgehog,NW_006805280.1,188713,189057,+,IgC1_MHC_I_alpha3,103127735,LOC103127735,pseudogene,aa_OG0000013,TRUE
MHCI,hedgehog,NW_006805280.1,220742,221476,+,MHC_I,103127736,LOC103127736,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805280.1,221934,222278,+,IgC1_MHC_I_alpha3,103127736,LOC103127736,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,15444,15695,+,MHC_I,103128070,LOC103128070,pseudogene,NA,TRUE
MHCI,hedgehog,NW_006805445.1,22959,23084,-,IgC1_MHC_I_alpha3,NW_006805445.1_1:1,NW_006805445.1_1:1,NA,NA,FALSE
MHCI,hedgehog,NW_006805445.1,32591,32884,-,IgC1_MHC_I_alpha3,103128069,LOC103128069,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,34012,34278,-,MHC_I,103128069,LOC103128069,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,34481,34759,-,MHC_I,103128069,LOC103128069,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,52710,52994,-,IgC1_MHC_I_alpha3,103128071,LOC103128071,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,61761,62045,-,MHC_I,103128071,LOC103128071,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,NW_006805445.1,62532,62807,-,MHC_I,103128071,LOC103128071,mRNA,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_184510,711,983,+,MHC_I,ENSEEUG00000013599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_184510,1333,1599,+,MHC_I,ENSEEUG00000013599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_184510,1881,2168,+,IgC1_MHC_I_alpha3,ENSEEUG00000013599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_20265,283,597,-,MHC_I,scaffold_20265_1:1,scaffold_20265_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_208950,6161,6424,-,IgC1_MHC_I_alpha3,ENSEEUG00000006976,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_208950,7248,7532,-,MHC_I,ENSEEUG00000006976,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_208950,7775,8050,-,MHC_I,ENSEEUG00000006976,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_212410,1212,1502,+,MHC_I,ENSEEUG00000010328,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_212410,1634,1954,+,MHC_I,ENSEEUG00000010328,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_213394,4740,4993,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSEEUG00000005209,NA,protein_coding,aa_OG0034402,TRUE
MHCI,hedgehog,scaffold_217258,4831,5535,+,MHC_I,ENSEEUG00000003387,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_217697,4189,4407,+,MHC_I,scaffold_217697_1:1,scaffold_217697_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_217697,5570,5863,+,IgC1_MHC_I_alpha3,scaffold_217697_1:1,scaffold_217697_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_235702,4215,4355,-,MHC_I,scaffold_235702_1:1,scaffold_235702_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_235702,4851,5126,-,MHC_I,scaffold_235702_1:1,scaffold_235702_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_241272,3552,3836,+,IgC1_MHC_I_alpha3,scaffold_241272_1:1,scaffold_241272_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_275431,1796,2107,+,MHC_I,scaffold_275431_1:1,scaffold_275431_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_275431,2570,2923,+,IgC1_MHC_I_alpha3,scaffold_275431_1:1,scaffold_275431_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_276449,3973,4275,-,IgC1_MHC_I_alpha3,ENSEEUG00000013649,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_276449,4670,4936,-,MHC_I,ENSEEUG00000013649,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_276449,5160,5390,-,MHC_I,ENSEEUG00000013649,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_279218,8681,8977,-,MHC_I,scaffold_279218_1:1,scaffold_279218_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_285840,11348,11473,-,IgC1_MHC_I_alpha3,scaffold_285840_1:1,scaffold_285840_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_314806,3537,3575,+,MHC_I,scaffold_314806_1:1,scaffold_314806_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_314806,3584,3772,+,MHC_I,scaffold_314806_1:1,scaffold_314806_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_314806,4236,4571,+,IgC1_MHC_I_alpha3,scaffold_314806_1:1,scaffold_314806_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_316748,3038,3316,+,MHC_I,scaffold_316748_1:1,scaffold_316748_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_316748,3519,3785,+,MHC_I,scaffold_316748_1:1,scaffold_316748_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_316748,4913,5206,+,IgC1_MHC_I_alpha3,scaffold_316748_1:1,scaffold_316748_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_330567,1,130,-,MHC_I,scaffold_330567_1:1,scaffold_330567_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_340792,1234,1404,+,MHC_I,ENSEEUG00000001728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_340792,1536,1829,+,MHC_I,ENSEEUG00000001728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_340792,2772,3024,+,IgC1_MHC_I_alpha3,ENSEEUG00000001728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_340792,43189,43533,+,IgC1_MHC_I_alpha3,ENSEEUG00000001778,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_341016,7618,7905,-,IgC1_MHC_I_alpha3,scaffold_341016_1:1,scaffold_341016_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_341016,10698,10985,-,MHC_I,scaffold_341016_1:1,scaffold_341016_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_341016,11387,11665,-,MHC_I,scaffold_341016_1:1,scaffold_341016_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_341016,20330,20602,-,IgC1_MHC_I_alpha3,scaffold_341016_1:2,scaffold_341016_1:2,NA,NA,FALSE
MHCI,hedgehog,scaffold_341016,50084,50524,-,IgC1_MHC_I_alpha3,ENSEEUG00000005599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_341016,50826,51098,-,MHC_I,ENSEEUG00000005599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_341016,51838,52113,-,MHC_I,ENSEEUG00000005599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_4386,6082,6387,-,IgC1_MHC_I_alpha3,scaffold_4386_1:1,scaffold_4386_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_66703,1453,1683,-,IgC1_MHC_Ia_RT1-Aa,scaffold_66703_1:1,scaffold_66703_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_8272,1019,1180,-,MHC_I,scaffold_8272_1:1,scaffold_8272_1:1,NA,NA,FALSE
MHCI,hedgehog,scaffold_85408,776,1096,+,MHC_I,ENSEEUG00000000430,NA,protein_coding,aa_OG0000000,TRUE
MHCI,hedgehog,scaffold_85408,1553,1900,+,IgC1_MHC_I_alpha3,ENSEEUG00000000430,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_2690,6155,6385,+,MHC_I,GeneScaffold_2690_1:1,GeneScaffold_2690_1:1,NA,NA,FALSE
MHCI,shrew,GeneScaffold_4102,158487,158816,-,IgC1_MHC_I_alpha3,GeneScaffold_4102_1:1,GeneScaffold_4102_1:1,NA,NA,FALSE
MHCI,shrew,GeneScaffold_7181,3081,3380,-,IgC1_MHC_I_alpha3,ENSSARG00000007501,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7181,3742,4152,-,MHC_I,ENSSARG00000007501,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7181,4328,4600,-,MHC_I,ENSSARG00000007501,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7186,10518,10785,-,MHC_I,ENSSARG00000003836,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7186,10968,11231,-,MHC_I,ENSSARG00000003836,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7194,907,1212,+,IgC1_MHC_I_alpha3,ENSSARG00000009801,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7195,2257,2628,+,IgC1_MHC_I_alpha3,ENSSARG00000004873,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7196,4975,5280,+,IgC1_MHC_I_alpha3,ENSSARG00000009991,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7209,2313,2441,-,IgC1_MHC_Ia_H2Db_H2Ld,ENSSARG00000008789,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7209,2935,3204,-,MHC_I,ENSSARG00000008789,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7209,3378,3650,-,MHC_I,ENSSARG00000008789,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7234,4758,5027,-,MHC_I,ENSSARG00000010312,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7234,5255,5524,-,MHC_I,ENSSARG00000010312,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7270,3421,3600,-,IgC1_MHC_I_alpha3,ENSSARG00000001968,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7270,4137,4411,-,MHC_I,ENSSARG00000001968,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7270,4586,4855,-,MHC_I,ENSSARG00000001968,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7275,7097,7366,-,MHC_I,ENSSARG00000013330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,GeneScaffold_7275,7522,7800,-,MHC_I,ENSSARG00000013330,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,NW_004545862.1,13510022,13510796,-,MHC_I,101543359,LOC101543359,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004545869.1,1917382,1917558,-,IgC1_MHC_Ib_HLA-E,NW_004545869.1_1:1,NW_004545869.1_1:1,NA,NA,FALSE
MHCI,shrew,NW_004545923.1,10612877,10613152,+,MHC_I,101539702,LOC101539702,mRNA,aa_OG0035038,TRUE
MHCI,shrew,NW_004545923.1,10613308,10613565,+,MHC_I,101539702,LOC101539702,mRNA,aa_OG0035038,TRUE
MHCI,shrew,NW_004545923.1,10614052,10614372,+,IgC1_MHC_I_alpha3,101539702,LOC101539702,mRNA,aa_OG0035038,TRUE
MHCI,shrew,NW_004545980.1,4498600,4499233,+,MHC_I,101550110,LOC101550110,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004545980.1,4499742,4500075,+,IgC1_MHC_I_alpha3,101550110,LOC101550110,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,12370,12570,+,MHC_I,101551523,LOC101551523,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,13117,13395,+,IgC1_MHC_I_alpha3,101551523,LOC101551523,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,38117,38287,+,MHC_I,101551788,LOC101551788,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,38691,39107,+,IgC1_MHC_I_alpha3,101551788,LOC101551788,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,79999,80274,+,MHC_I,101552052,LOC101552052,misc_RNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,80805,81098,+,IgC1_MHC_I_alpha3,101552052,LOC101552052,misc_RNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004545999.1,931019,931202,-,IgC1_MHC_I_alpha3,101555494,LOC101555494,pseudogene,aa_OG0006440,TRUE
MHCI,shrew,NW_004545999.1,931937,932101,-,MHC_I,101555494,LOC101555494,pseudogene,aa_OG0006440,TRUE
MHCI,shrew,NW_004546042.1,79589,79756,+,MHC_I,101546424,LOC101546424,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546042.1,108845,109048,+,MHC_I,101546424,LOC101546424,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546042.1,118834,119046,+,IgC1_MHC_I_alpha3,101546424,LOC101546424,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546042.1,126810,127076,-,MHC_I,101546686,LOC101546686,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546042.1,127335,127601,-,MHC_I,101546686,LOC101546686,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546105.1,9228,9371,-,IgC1_MHC_I_alpha3,101541057,LOC101541057,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546105.1,92534,93058,-,IgC1_MHC_I_alpha3,NW_004546105.1_1:1,NW_004546105.1_1:1,NA,NA,FALSE
MHCI,shrew,NW_004546105.1,114936,115250,-,IgC1_MHC_I_alpha3,101541316,LOC101541316,mRNA,aa_OG0036044,TRUE
MHCI,shrew,NW_004546105.1,116975,117160,-,MHC_I,101541316,LOC101541316,mRNA,aa_OG0036044,TRUE
MHCI,shrew,NW_004546105.1,117560,117700,-,MHC_I,101541316,LOC101541316,mRNA,aa_OG0036044,TRUE
MHCI,shrew,NW_004546105.1,202122,202454,-,IgC1_MHC_I_alpha3,101541581,LOC101541581,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546105.1,202918,203217,-,MHC_I,101541581,LOC101541581,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546105.1,203484,203678,-,MHC_I,101541581,LOC101541581,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546105.1,262512,262817,-,IgC1_MHC_I_alpha3,NW_004546105.1_2:1,NW_004546105.1_2:1,NA,NA,FALSE
MHCI,shrew,NW_004546105.1,263355,263624,-,MHC_I,NW_004546105.1_2:1,NW_004546105.1_2:1,NA,NA,FALSE
MHCI,shrew,NW_004546105.1,263698,263775,-,MHC_I,NW_004546105.1_2:1,NW_004546105.1_2:1,NA,NA,FALSE
MHCI,shrew,NW_004546146.1,68258,68413,+,MHC_I,101555703,LOC101555703,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004546146.1,68416,68625,+,MHC_I,101555703,LOC101555703,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004546146.1,68806,69075,+,MHC_I,101555703,LOC101555703,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004546146.1,69597,69914,+,IgC1_MHC_I_alpha3,101555703,LOC101555703,pseudogene,aa_OG0000000,TRUE
MHCI,shrew,NW_004546146.1,86304,86573,+,MHC_I,101555963,LOC101555963,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546146.1,86748,87023,+,MHC_I,101555963,LOC101555963,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546174.1,17745,18014,+,MHC_I,101551633,LOC101551633,pseudogene,aa_OG0000489,TRUE
MHCI,shrew,NW_004546174.1,18191,18445,+,MHC_I,101551633,LOC101551633,pseudogene,aa_OG0000489,TRUE
MHCI,shrew,NW_004546174.1,18956,19279,+,IgC1_MHC_I_alpha3,101551633,LOC101551633,pseudogene,aa_OG0000489,TRUE
MHCI,shrew,NW_004546174.1,34572,34718,+,IgC1_MHC_I_alpha3,101551633,LOC101551633,pseudogene,aa_OG0000489,TRUE
MHCI,shrew,NW_004546206.1,54885,55001,+,MHC_I,101545992,LOC101545992,mRNA,aa_OG0031122,TRUE
MHCI,shrew,NW_004546206.1,55391,55618,+,MHC_I,101545992,LOC101545992,mRNA,aa_OG0031122,TRUE
MHCI,shrew,NW_004546206.1,56119,56466,+,IgC1_MHC_I_alpha3,101545992,LOC101545992,mRNA,aa_OG0031122,TRUE
MHCI,shrew,NW_004546251.1,13828,13965,-,MHC_I,101559021,LOC101559021,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546251.1,14197,14466,-,MHC_I,101559021,LOC101559021,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546276.1,39102,39464,-,IgC1_MHC_I_alpha3,101541410,LOC101541410,misc_RNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546276.1,48215,48301,-,MHC_I,101541410,LOC101541410,NA,NA,FALSE
MHCI,shrew,NW_004546276.1,48476,48628,-,MHC_I,101541410,LOC101541410,misc_RNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546323.1,20132,20416,-,IgC1_MHC_I_alpha3,101548018,LOC101548018,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546323.1,20935,21291,-,MHC_I,101548018,LOC101548018,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546323.1,21380,21649,-,MHC_I,101548018,LOC101548018,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546348.1,10210,10524,+,MHC_I,101550657,LOC101550657,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546348.1,10657,10926,+,MHC_I,101550657,LOC101550657,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546369.1,38754,39059,-,IgC1_MHC_I_alpha3,101553053,LOC101553053,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546369.1,39381,39851,-,MHC_I,101553053,LOC101553053,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546392.1,26186,26551,+,IgC1_MHC_I_alpha3,101555446,LOC101555446,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004546563.1,2796,3074,-,IgC1_MHC_I_alpha3,NW_004546563.1_1:1,NW_004546563.1_1:1,NA,NA,FALSE
MHCI,shrew,NW_004547011.1,3639,3809,+,MHC_I,101539305,LOC101539305,mRNA,aa_OG0000000,TRUE
MHCI,shrew,NW_004547011.1,4375,4707,+,IgC1_MHC_I_alpha3,101539305,LOC101539305,mRNA,aa_OG0000000,TRUE
MHCI,shrew,scaffold_105138,1008,1325,-,IgC1_MHC_I_alpha3,scaffold_105138_1:1,scaffold_105138_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_116978,85,348,-,MHC_I,scaffold_116978_1:1,scaffold_116978_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_1257,89,358,-,MHC_I,scaffold_1257_1:1,scaffold_1257_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_128015,1283,1546,+,MHC_I,scaffold_128015_1:1,scaffold_128015_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_128015,1722,1991,+,MHC_I,scaffold_128015_1:1,scaffold_128015_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_135733,5600,5870,+,MHC_I,scaffold_135733_1:1,scaffold_135733_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_142971,12225,12512,-,IgC1_MHC_I_alpha3,scaffold_142971_1:1,scaffold_142971_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_142971,12624,12893,-,MHC_I,scaffold_142971_1:1,scaffold_142971_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_145168,12148,12454,-,IgC1_MHC_I_alpha3,ENSSARG00000010832,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_145168,12932,13273,-,MHC_I,ENSSARG00000010832,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_145168,13449,13718,-,MHC_I,ENSSARG00000010832,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_147442,7431,7736,-,IgC1_MHC_I_alpha3,ENSSARG00000009602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_147442,8221,8547,-,MHC_I,ENSSARG00000009602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_147442,8724,8987,-,MHC_I,ENSSARG00000009602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_148190,41649,41954,-,IgC1_MHC_I_alpha3,ENSSARG00000003548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_148190,42474,42746,-,MHC_I,ENSSARG00000003548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_148190,42869,43138,-,MHC_I,ENSSARG00000003548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_158996,4243,4512,+,MHC_I,scaffold_158996_1:1,scaffold_158996_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_159811,8457,8812,+,IgC1_MHC_I_alpha3,scaffold_159811_1:1,scaffold_159811_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_163614,2222,2491,+,MHC_I,ENSSARG00000010981,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_163614,2668,2988,+,MHC_I,ENSSARG00000010981,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_163614,3442,3747,+,IgC1_MHC_I_alpha3,ENSSARG00000010981,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_164206,8394,8699,-,IgC1_MHC_I_alpha3,ENSSARG00000010437,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_164206,9197,9496,-,MHC_I,ENSSARG00000010437,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_166030,2754,3089,-,IgC1_MHC_I_alpha3,ENSSARG00000000681,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_168159,14957,15226,+,MHC_I,ENSSARG00000006250,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_168159,15412,15687,+,MHC_I,ENSSARG00000006250,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_168159,16219,16533,+,IgC1_MHC_I_alpha3,ENSSARG00000006250,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_177109,7928,8179,+,MHC_I,ENSSARG00000002356,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_177109,8355,8624,+,MHC_I,ENSSARG00000002356,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_177109,9147,9476,+,IgC1_MHC_I_alpha3,ENSSARG00000002356,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_177840,4179,4892,-,MHC_I,ENSSARG00000012929,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_181734,4341,4447,+,MHC_I,ENSSARG00000010309,NA,protein_coding,aa_OG0031122,TRUE
MHCI,shrew,scaffold_181734,4624,4893,+,MHC_I,ENSSARG00000010309,NA,protein_coding,aa_OG0031122,TRUE
MHCI,shrew,scaffold_181734,5408,5761,+,IgC1_MHC_I_alpha3,ENSSARG00000010309,NA,protein_coding,aa_OG0031122,TRUE
MHCI,shrew,scaffold_181734,10729,11028,+,MHC_I,scaffold_181734_1:1,scaffold_181734_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_188217,1927,2196,+,MHC_I,ENSSARG00000010524,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_188217,2372,2818,+,MHC_I,ENSSARG00000010524,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_188217,3327,3635,+,IgC1_MHC_I_alpha3,ENSSARG00000010524,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_189566,459,770,+,MHC_I,ENSSARG00000005118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_189566,904,1176,+,MHC_I,ENSSARG00000005118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_189566,1696,2025,+,IgC1_MHC_I_alpha3,ENSSARG00000005118,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_195168,35878,36183,-,IgC1_MHC_I_alpha3,ENSSARG00000009451,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_195168,36677,36976,-,MHC_I,ENSSARG00000009451,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_197852,2084,2351,+,MHC_I,ENSSARG00000002447,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_197852,2525,2794,+,MHC_I,ENSSARG00000002447,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_199504,457,681,+,IgC1_MHC_Ia_H2Db_H2Ld,scaffold_199504_1:1,scaffold_199504_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_199518,161,436,-,MHC_I,scaffold_199518_1:1,scaffold_199518_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_199772,4802,5071,+,MHC_I,ENSSARG00000004071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_199772,5247,5588,+,MHC_I,ENSSARG00000004071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_199772,6068,6364,+,IgC1_MHC_I_alpha3,ENSSARG00000004071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_20375,1319,1624,+,IgC1_MHC_I_alpha3,scaffold_20375_1:1,scaffold_20375_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_205478,3420,3812,+,MHC_I,scaffold_205478_1:1,scaffold_205478_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_205478,3942,4211,+,MHC_I,scaffold_205478_1:1,scaffold_205478_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_205478,4748,5023,+,IgC1_MHC_I_alpha3,scaffold_205478_1:1,scaffold_205478_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_205999,9801,9984,-,IgC1_MHC_I_alpha3,scaffold_205999_1:1,scaffold_205999_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_206309,4045,4400,+,IgC1_MHC_I_alpha3,scaffold_206309_1:1,scaffold_206309_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_210174,3434,3709,+,IgC1_MHC_I_alpha3,scaffold_210174_1:1,scaffold_210174_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_210294,1671,1976,-,IgC1_MHC_I_alpha3,scaffold_210294_1:1,scaffold_210294_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_216899,8994,9170,+,IgC1_MHC_Ib_HLA-E,scaffold_216899_1:1,scaffold_216899_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_217479,4310,4579,+,MHC_I,scaffold_217479_1:1,scaffold_217479_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_217479,4755,4973,+,MHC_I,scaffold_217479_1:1,scaffold_217479_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_223606,16368,16637,+,MHC_I,scaffold_223606_1:1,scaffold_223606_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_226253,910,1062,+,MHC_I,scaffold_226253_1:1,scaffold_226253_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_226253,1237,1323,+,MHC_I,scaffold_226253_1:1,scaffold_226253_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_227112,902,1207,+,IgC1_MHC_I_alpha3,scaffold_227112_1:1,scaffold_227112_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_227112,8078,8383,-,IgC1_MHC_I_alpha3,ENSSARG00000003149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_227112,8908,9177,-,MHC_I,ENSSARG00000003149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_227112,9354,9626,-,MHC_I,ENSSARG00000003149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_229572,8994,9344,-,IgC1_MHC_I_alpha3,ENSSARG00000005923,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_229572,9736,10089,-,MHC_I,ENSSARG00000005923,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_229572,10265,10465,-,MHC_I,ENSSARG00000005923,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_229594,2371,2718,-,IgC1_MHC_I_alpha3,scaffold_229594_1:1,scaffold_229594_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_229594,3193,3513,-,MHC_I,scaffold_229594_1:1,scaffold_229594_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_229594,3755,3901,-,MHC_I,scaffold_229594_1:1,scaffold_229594_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_232588,34089,34287,+,IgC1_MHC_I_alpha3,scaffold_232588_1:1,scaffold_232588_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_232684,8004,8273,+,MHC_I,ENSSARG00000006159,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_232684,8449,8718,+,MHC_I,ENSSARG00000006159,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_232684,9233,9574,+,IgC1_MHC_I_alpha3,ENSSARG00000006159,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_232831,6205,6510,+,IgC1_MHC_I_alpha3,scaffold_232831_1:1,scaffold_232831_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_233940,4962,5273,+,MHC_I,ENSSARG00000008938,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_233940,5407,5706,+,MHC_I,ENSSARG00000008938,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_233940,6231,6506,+,IgC1_MHC_I_alpha3,ENSSARG00000008938,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_233940,50429,50584,+,MHC_I,scaffold_233940_1:1,scaffold_233940_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_233940,50587,50796,+,MHC_I,scaffold_233940_1:1,scaffold_233940_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_233969,41642,41896,+,MHC_I,scaffold_233969_1:1,scaffold_233969_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_233969,77342,78010,+,MHC_I,ENSSARG00000004795,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_233969,78530,78892,+,IgC1_MHC_I_alpha3,ENSSARG00000004795,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_235156,47863,48168,-,IgC1_MHC_I_alpha3,scaffold_235156_1:1,scaffold_235156_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_235156,48646,48945,-,MHC_I,scaffold_235156_1:1,scaffold_235156_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_235156,49121,49390,-,MHC_I,scaffold_235156_1:1,scaffold_235156_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_237158,43278,43547,+,MHC_I,scaffold_237158_1:1,scaffold_237158_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_237158,43723,43992,+,MHC_I,scaffold_237158_1:1,scaffold_237158_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_237158,44530,44607,+,IgC1_MHC_1b_Qa-1b,scaffold_237158_1:1,scaffold_237158_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_251634,84332,84604,+,MHC_I,ENSSARG00000008863,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_251634,84863,85129,+,MHC_I,ENSSARG00000008863,NA,NA,NA,FALSE
MHCI,shrew,scaffold_251634,85996,86262,+,IgC1_MHC_I_alpha3,ENSSARG00000008863,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_27276,309,605,+,IgC1_MHC_I_alpha3,scaffold_27276_1:1,scaffold_27276_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31462,1155,1478,-,IgC1_MHC_I_alpha3,scaffold_31462_1:1,scaffold_31462_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31463,398,667,+,MHC_I,ENSSARG00000003634,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_31463,756,1112,+,MHC_I,ENSSARG00000003634,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_31463,1639,1848,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSSARG00000003634,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_31464,231,542,-,IgC1_MHC_I_alpha3,scaffold_31464_1:1,scaffold_31464_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31465,1250,1552,+,IgC1_MHC_I_alpha3,ENSSARG00000013442,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_31466,2398,2721,-,IgC1_MHC_I_alpha3,scaffold_31466_1:1,scaffold_31466_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31467,524,836,-,IgC1_MHC_I_alpha3,scaffold_31467_1:1,scaffold_31467_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31468,273,614,-,IgC1_MHC_I_alpha3,scaffold_31468_1:1,scaffold_31468_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_31469,1245,1361,+,IgC1_MHC_Ia_H2Db_H2Ld,ENSSARG00000001674,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_32962,862,1185,+,IgC1_MHC_I_alpha3,scaffold_32962_1:1,scaffold_32962_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_33902,867,1136,+,MHC_I,scaffold_33902_1:1,scaffold_33902_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_34041,454,1038,+,MHC_I,scaffold_34041_1:1,scaffold_34041_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_34042,691,1045,+,IgC1_MHC_I_alpha3,ENSSARG00000006588,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_36066,602,871,+,MHC_I,scaffold_36066_1:1,scaffold_36066_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36066,1048,1308,+,MHC_I,scaffold_36066_1:1,scaffold_36066_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36067,465,725,-,MHC_I,scaffold_36067_1:1,scaffold_36067_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36067,903,1169,-,MHC_I,scaffold_36067_1:1,scaffold_36067_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_3611,690,1013,-,IgC1_MHC_I_alpha3,scaffold_3611_1:1,scaffold_3611_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36807,983,1252,-,MHC_I,ENSSARG00000013782,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_36807,1428,1689,-,MHC_I,ENSSARG00000013782,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_36808,560,829,-,MHC_I,scaffold_36808_1:1,scaffold_36808_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36808,1005,1220,-,MHC_I,scaffold_36808_1:1,scaffold_36808_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36809,379,744,-,IgC1_MHC_I_alpha3,scaffold_36809_1:1,scaffold_36809_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36810,904,1227,-,IgC1_MHC_I_alpha3,scaffold_36810_1:1,scaffold_36810_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_36811,871,954,+,MHC_I,scaffold_36811_1:1,scaffold_36811_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_39409,287,412,-,MHC_I,scaffold_39409_1:1,scaffold_39409_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40015,932,1273,-,IgC1_MHC_I_alpha3,scaffold_40015_1:1,scaffold_40015_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40016,339,674,-,IgC1_MHC_I_alpha3,scaffold_40016_1:1,scaffold_40016_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40017,995,1291,+,IgC1_MHC_I_alpha3,scaffold_40017_1:1,scaffold_40017_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40018,453,776,-,IgC1_MHC_I_alpha3,scaffold_40018_1:1,scaffold_40018_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40018,1294,1563,-,MHC_I,scaffold_40018_1:1,scaffold_40018_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_40019,496,819,-,IgC1_MHC_I_alpha3,ENSSARG00000001301,NA,protein_coding,aa_OG0031122,TRUE
MHCI,shrew,scaffold_40019,1317,1592,-,MHC_I,ENSSARG00000001301,NA,protein_coding,aa_OG0031122,TRUE
MHCI,shrew,scaffold_40020,929,1198,-,MHC_I,scaffold_40020_1:1,scaffold_40020_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_42148,655,924,-,MHC_I,ENSSARG00000007807,NA,protein_coding,aa_OG0019543,TRUE
MHCI,shrew,scaffold_42148,1100,1303,-,MHC_I,ENSSARG00000007807,NA,protein_coding,aa_OG0019543,TRUE
MHCI,shrew,scaffold_4609,25,279,-,MHC_I,scaffold_4609_1:1,scaffold_4609_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_61807,1873,2139,+,MHC_I,scaffold_61807_1:1,scaffold_61807_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_61904,6881,7069,+,MHC_I,ENSSARG00000001689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_61904,7349,7483,+,MHC_I,ENSSARG00000001689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_61904,7512,7616,+,MHC_I,ENSSARG00000001689,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_63317,776,1039,+,MHC_I,scaffold_63317_1:1,scaffold_63317_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_69340,1207,1563,+,IgC1_MHC_I_alpha3,ENSSARG00000007111,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_70854,96,365,-,MHC_I,scaffold_70854_1:1,scaffold_70854_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_84759,121,453,-,IgC1_MHC_I_alpha3,scaffold_84759_1:1,scaffold_84759_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_87978,1945,2307,-,MHC_I,ENSSARG00000000521,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_87978,2396,2665,-,MHC_I,ENSSARG00000000521,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_88309,2930,3250,+,MHC_I,ENSSARG00000006517,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_88309,3425,3766,+,MHC_I,ENSSARG00000006517,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_88309,4243,4539,+,IgC1_MHC_I_alpha3,ENSSARG00000006517,NA,protein_coding,aa_OG0000000,TRUE
MHCI,shrew,scaffold_89724,9448,9834,-,IgC1_MHC_I_alpha3,scaffold_89724_1:1,scaffold_89724_1:1,NA,NA,FALSE
MHCI,shrew,scaffold_89724,10363,10452,-,MHC_I,scaffold_89724_1:1,scaffold_89724_1:1,NA,NA,FALSE
MHCI,microbat,AAPE02061493,2765,3082,+,MHC_I,ENSMLUG00000024677,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02061493,3328,3594,+,MHC_I,ENSMLUG00000024677,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02061493,4157,4525,+,IgC1_MHC_I_alpha3,ENSMLUG00000024677,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02061493,17435,17752,+,MHC_I,111823006,LOC111823006,mRNA,aa_OG0034473,TRUE
MHCI,microbat,AAPE02061493,17937,18239,+,MHC_I,111823006,LOC111823006,mRNA,aa_OG0034473,TRUE
MHCI,microbat,AAPE02061493,18789,19157,+,IgC1_MHC_I_alpha3,111823006,LOC111823006,mRNA,aa_OG0034473,TRUE
MHCI,microbat,AAPE02064302,1368,1685,+,MHC_I,ENSMLUG00000024543,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02064302,1919,2185,+,MHC_I,ENSMLUG00000024543,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02064302,2747,3136,+,IgC1_MHC_I_alpha3,ENSMLUG00000024543,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02064590,1240,1506,+,IgC1_MHC_I_alpha3,ENSMLUG00000000098,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02064822,10757,11052,+,MHC_I,102431895,LOC102431895,pseudogene,aa_OG0008027,TRUE
MHCI,microbat,AAPE02064822,11273,11314,+,MHC_I,102431895,LOC102431895,pseudogene,aa_OG0008027,TRUE
MHCI,microbat,AAPE02064822,11334,11414,+,MHC_I,102431895,LOC102431895,pseudogene,aa_OG0008027,TRUE
MHCI,microbat,AAPE02065645,1824,2141,+,MHC_I,ENSMLUG00000028304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02065645,2353,2619,+,MHC_I,ENSMLUG00000028304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02065645,3178,3498,+,IgC1_MHC_I_alpha3,ENSMLUG00000028304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02066112,522,890,+,IgC1_MHC_I_alpha3,102424088,LOC102424088,mRNA,aa_OG0028328,TRUE
MHCI,microbat,AAPE02067387,1895,2212,+,MHC_I,ENSMLUG00000026030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02067387,2499,2762,+,MHC_I,ENSMLUG00000026030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02067387,3292,3666,+,IgC1_MHC_I_alpha3,ENSMLUG00000026030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02067444,1154,1492,+,MHC_I,ENSMLUG00000023729;102423484,NA;LOC102423484,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02067444,1722,1988,+,MHC_I,ENSMLUG00000023729;102423484,NA;LOC102423484,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02067444,2549,2863,+,IgC1_MHC_I_alpha3,ENSMLUG00000023729;102423484,NA;LOC102423484,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02069335,4959,5307,-,IgC1_MHC_I_alpha3,ENSMLUG00000026554;102420141,NA;LOC102420141,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02069335,5840,6106,-,MHC_I,ENSMLUG00000026554;102420141,NA;LOC102420141,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02069335,6314,6631,-,MHC_I,ENSMLUG00000026554;102420141,NA;LOC102420141,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,AAPE02070409,3656,3942,+,MHC_I,111824864,LOC111824864,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,AAPE02070409,4158,4208,+,MHC_I,111824864,LOC111824864,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,AAPE02070409,4225,4302,+,MHC_I,111824864,LOC111824864,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,AAPE02071066,3185,3487,+,IgC1_MHC_I_alpha3,102425763,LOC102425763,mRNA,aa_OG0000000,TRUE
MHCI,microbat,AAPE02071518,927,1244,+,MHC_I,ENSMLUG00000028052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02071518,1451,1717,+,MHC_I,ENSMLUG00000028052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,AAPE02071518,2242,2556,+,IgC1_MHC_I_alpha3,ENSMLUG00000028052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429767,3166954,3167303,-,IgC1_MHC_I_alpha3,GL429767_1:1,GL429767_1:1,NA,NA,FALSE
MHCI,microbat,GL429767,3167314,3167415,-,MHC_I,GL429767_1:1,GL429767_1:1,NA,NA,FALSE
MHCI,microbat,GL429847,9098,9388,-,IgC1_MHC_I_alpha3,ENSMLUG00000023145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429847,9997,10263,-,MHC_I,ENSMLUG00000023145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429847,10481,10618,-,MHC_I,ENSMLUG00000023145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429847,53015,53305,-,IgC1_MHC_I_alpha3,ENSMLUG00000029414,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429847,53761,53982,+,MHC_I,ENSMLUG00000029414,NA,NA,NA,FALSE
MHCI,microbat,GL429847,54143,54382,-,MHC_I,ENSMLUG00000029414,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429847,54614,54886,-,MHC_I,ENSMLUG00000029414,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL429871,3544963,3545259,+,MHC_I,ENSMLUG00000025372;102428181,NA;LOC102428181,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL429871,3545288,3545767,+,IgC1_MHC_I_alpha3,ENSMLUG00000025372;102428181,NA;LOC102428181,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL429873,383668,384146,-,IgC1_MHC_I_alpha3,ENSMLUG00000028263;102428290,NA;LOC102428290,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL429873,384175,384327,-,MHC_I,ENSMLUG00000028263;102428290,NA;LOC102428290,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL429873,384351,384452,-,MHC_I,ENSMLUG00000028263;102428290,NA;LOC102428290,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL430078,263600,263743,+,IgC1_MHC_I_alpha3,GL430078_1:1,GL430078_1:1,NA,NA,FALSE
MHCI,microbat,GL430245,458357,458575,-,IgC1_MHC_Ia_HLA-F,GL430245_1:1,GL430245_1:1,NA,NA,FALSE
MHCI,microbat,GL430245,458627,458665,-,MHC_I,GL430245_1:1,GL430245_1:1,NA,NA,FALSE
MHCI,microbat,GL430245,458755,458799,-,MHC_I,GL430245_1:1,GL430245_1:1,NA,NA,FALSE
MHCI,microbat,GL430249,49674,50558,-,MHC_I,ENSMLUG00000006006,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430352,370681,370974,+,MHC_I,ENSMLUG00000028385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430352,371229,371495,+,MHC_I,ENSMLUG00000028385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430352,372081,372367,+,IgC1_MHC_I_alpha3,ENSMLUG00000028385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430490,94156,94533,-,IgC1_MHC_I_alpha3,ENSMLUG00000028334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430490,96490,96792,-,MHC_I,ENSMLUG00000028334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430490,97787,98071,-,MHC_I,ENSMLUG00000028334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,97409,97777,-,IgC1_MHC_I_alpha3,ENSMLUG00000024243,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,98331,98597,-,MHC_I,ENSMLUG00000024243,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,98837,99154,-,MHC_I,ENSMLUG00000024243,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,114178,114549,-,IgC1_MHC_I_alpha3,ENSMLUG00000006693,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,115139,115405,-,MHC_I,ENSMLUG00000006693,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,115616,115915,-,MHC_I,ENSMLUG00000006693,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,127885,128211,-,IgC1_MHC_I_alpha3,102442224,LOC102442224,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430743,128751,129017,-,MHC_I,102442224,LOC102442224,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430743,129235,129534,-,MHC_I,ENSMLUG00000023140;102442224,NA;LOC102442224,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430743,143317,143616,+,MHC_I,ENSMLUG00000002407,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430743,143857,144123,+,MHC_I,ENSMLUG00000002407,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430770,10710,11012,+,MHC_I,ENSMLUG00000024891;ENSMLUG00000023888;102442956,NA;LOC102442956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL430770,11236,11501,+,MHC_I,ENSMLUG00000024891;ENSMLUG00000023888;102442956,NA;LOC102442956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL430770,12110,12430,+,IgC1_MHC_I_alpha3,ENSMLUG00000024891;102442956,NA;LOC102442956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,microbat,GL430770,35949,36221,+,MHC_I,ENSMLUG00000030625,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430770,36450,36725,+,MHC_I,ENSMLUG00000030625,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430770,37570,37836,+,IgC1_MHC_I_alpha3,ENSMLUG00000030625,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430770,87713,87997,+,MHC_I,ENSMLUG00000023888;102417371,NA;LOC102417371,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430770,88227,88493,+,MHC_I,ENSMLUG00000023888;102417371,NA;LOC102417371,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430770,89102,89377,+,IgC1_MHC_I_alpha3,ENSMLUG00000023888;102417371,NA;LOC102417371,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430783,11179,11443,-,MHC_I,102434595,LOC102434595,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,GL430783,11646,11790,-,MHC_I,102434595,LOC102434595,NA,NA,FALSE
MHCI,microbat,GL430783,59613,59966,-,IgC1_MHC_I_alpha3,ENSMLUG00000026002,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430783,60492,60758,-,MHC_I,ENSMLUG00000026002,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430783,60970,61287,-,MHC_I,ENSMLUG00000026002,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430783,93477,93842,-,IgC1_MHC_I_alpha3,102433031,LOC102433031,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,GL430783,94352,94612,-,MHC_I,102433031,LOC102433031,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,GL430783,94814,95096,-,MHC_I,102433031,LOC102433031,pseudogene,aa_OG0028328,TRUE
MHCI,microbat,GL430783,106386,106463,-,MHC_I,GL430783_2:1,GL430783_2:1,NA,NA,FALSE
MHCI,microbat,GL430783,106480,106530,-,MHC_I,GL430783_2:1,GL430783_2:1,NA,NA,FALSE
MHCI,microbat,GL430783,106741,107043,-,MHC_I,GL430783_2:1,GL430783_2:1,NA,NA,FALSE
MHCI,microbat,GL430783,126073,126387,-,IgC1_MHC_I_alpha3,102432710,LOC102432710,mRNA,aa_OG0028328,TRUE
MHCI,microbat,GL430786,31641,31925,+,MHC_I,ENSMLUG00000028684,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430786,32155,32421,+,MHC_I,ENSMLUG00000028684,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430786,33029,33319,+,IgC1_MHC_I_alpha3,ENSMLUG00000028684,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430786,80346,80630,+,MHC_I,ENSMLUG00000024750,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430786,80858,81127,+,MHC_I,ENSMLUG00000024750,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430786,81698,81994,+,IgC1_MHC_I_alpha3,ENSMLUG00000024750,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,4047,4313,+,MHC_I,ENSMLUG00000025459;102436545,NA;LOC102436545,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430819,4872,5240,+,IgC1_MHC_I_alpha3,ENSMLUG00000025459;102436545,NA;LOC102436545,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430819,11004,11321,+,MHC_I,102435927,LOC102435927,mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430819,11584,11850,+,MHC_I,ENSMLUG00000028336;102435927,NA;LOC102435927,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430819,12411,12725,+,IgC1_MHC_I_alpha3,ENSMLUG00000028336;102435927,NA;LOC102435927,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL430819,28142,28390,+,MHC_I,GL430819_1:1,GL430819_1:1,NA,NA,FALSE
MHCI,microbat,GL430819,28523,28672,-,IgC1_MHC_1b_Qa-1b,GL430819_1:1,GL430819_1:1,NA,NA,FALSE
MHCI,microbat,GL430819,28702,28923,+,IgC1_MHC_I_alpha3,GL430819_1:1,GL430819_1:1,NA,NA,FALSE
MHCI,microbat,GL430819,34953,35232,+,MHC_I,ENSMLUG00000024844,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,35448,35714,+,MHC_I,ENSMLUG00000024844,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,36530,36898,+,IgC1_MHC_I_alpha3,ENSMLUG00000024844,NA,NA,NA,FALSE
MHCI,microbat,GL430819,51034,51333,+,MHC_I,ENSMLUG00000024844,NA,NA,NA,FALSE
MHCI,microbat,GL430819,51560,51598,+,MHC_I,ENSMLUG00000024844,NA,NA,NA,FALSE
MHCI,microbat,GL430819,51606,51863,+,MHC_I,ENSMLUG00000024844,NA,NA,NA,FALSE
MHCI,microbat,GL430819,52417,52830,+,IgC1_MHC_I_alpha3,ENSMLUG00000024844,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,69541,69858,+,MHC_I,ENSMLUG00000022334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,70087,70353,+,MHC_I,ENSMLUG00000022334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,70833,71282,+,IgC1_MHC_I_alpha3,ENSMLUG00000022334,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,80316,80633,+,MHC_I,ENSMLUG00000012006,NA,NA,NA,FALSE
MHCI,microbat,GL430819,80845,81076,+,MHC_I,ENSMLUG00000012006,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,81639,81953,+,IgC1_MHC_I_alpha3,ENSMLUG00000012006,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,96810,97127,+,MHC_I,ENSMLUG00000023754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,97313,97579,+,MHC_I,ENSMLUG00000023754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430819,97991,98509,+,IgC1_MHC_I_alpha3,ENSMLUG00000023754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,2996,3313,+,MHC_I,ENSMLUG00000000040,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,3543,3809,+,MHC_I,ENSMLUG00000000040,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,4384,4734,+,IgC1_MHC_I_alpha3,ENSMLUG00000000040,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,9942,10259,+,MHC_I,ENSMLUG00000030678,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,10489,10746,+,MHC_I,ENSMLUG00000003827,NA,protein_coding,aa_OG0034954,TRUE
MHCI,microbat,GL430925,11627,11995,+,IgC1_MHC_I_alpha3,ENSMLUG00000003827,NA,protein_coding,aa_OG0034954,TRUE
MHCI,microbat,GL430925,17882,18160,+,MHC_I,ENSMLUG00000030678,NA,NA,NA,FALSE
MHCI,microbat,GL430925,18384,18647,+,MHC_I,ENSMLUG00000030678,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,19205,19531,+,IgC1_MHC_I_alpha3,ENSMLUG00000030678,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,31241,31558,+,MHC_I,ENSMLUG00000000604;111824319,NA;LOC111824319,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430925,31801,32065,+,MHC_I,ENSMLUG00000000604;111824319,NA;LOC111824319,protein_coding;pseudogene,aa_OG0000000;aa_OG0028328,TRUE
MHCI,microbat,GL430925,32562,32936,+,IgC1_MHC_I_alpha3,ENSMLUG00000000604,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,47497,47814,+,MHC_I,ENSMLUG00000022587,NA,NA,NA,FALSE
MHCI,microbat,GL430925,48053,48331,+,MHC_I,ENSMLUG00000022587,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,48875,49243,+,IgC1_MHC_I_alpha3,ENSMLUG00000022587,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,64467,64784,+,MHC_I,ENSMLUG00000024951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,65032,65349,+,MHC_I,ENSMLUG00000024951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,65810,66178,+,IgC1_MHC_I_alpha3,ENSMLUG00000024951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,80847,81164,+,MHC_I,ENSMLUG00000027394,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,81316,81582,+,MHC_I,ENSMLUG00000027394,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL430925,82146,82460,+,IgC1_MHC_I_alpha3,ENSMLUG00000027394,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431006,39526,39792,-,IgC1_MHC_I_alpha3,ENSMLUG00000024455,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431006,40392,40667,-,MHC_I,ENSMLUG00000024455,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431006,40894,41178,-,MHC_I,ENSMLUG00000024455,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431022,34525,34851,+,MHC_I,ENSMLUG00000026691,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431022,35078,35341,+,MHC_I,ENSMLUG00000026691,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431022,35937,36203,+,IgC1_MHC_I_alpha3,ENSMLUG00000026691,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431022,45089,45391,+,MHC_I,102428684,LOC102428684,mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL431022,45602,45868,+,MHC_I,ENSMLUG00000013968;102428684,NA;LOC102428684,protein_coding;mRNA,aa_OG0023815;aa_OG0000000,TRUE
MHCI,microbat,GL431022,46449,46793,+,IgC1_MHC_I_alpha3,ENSMLUG00000013968;102428684,NA;LOC102428684,protein_coding;mRNA,aa_OG0023815;aa_OG0000000,TRUE
MHCI,microbat,GL431162,34443,34757,-,IgC1_MHC_I_alpha3,106695491,LOC106695491,mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL431380,4991,5308,+,MHC_I,ENSMLUG00000029318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,5517,5783,+,MHC_I,ENSMLUG00000029318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,6293,6607,+,IgC1_MHC_I_alpha3,ENSMLUG00000029318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,24114,24431,+,MHC_I,ENSMLUG00000028573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,24643,24909,+,MHC_I,ENSMLUG00000028573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,25444,25788,+,IgC1_MHC_I_alpha3,ENSMLUG00000028573,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431380,47465,47776,+,MHC_I,GL431380_1:1,GL431380_1:1,NA,NA,FALSE
MHCI,microbat,GL431433,11211,11528,+,MHC_I,ENSMLUG00000026917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431433,11740,12006,+,MHC_I,ENSMLUG00000026917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431433,12516,12887,+,IgC1_MHC_I_alpha3,ENSMLUG00000026917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431537,5993,6283,-,IgC1_MHC_I_alpha3,ENSMLUG00000008888;102416963,NA;LOC102416963,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL431537,6887,7153,-,MHC_I,ENSMLUG00000008888;102416963,NA;LOC102416963,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL431537,7383,7655,-,MHC_I,ENSMLUG00000008888;102416963,NA;LOC102416963,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,microbat,GL431977,41328,41594,-,IgC1_MHC_I_alpha3,ENSMLUG00000025813,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431977,42201,42467,-,MHC_I,ENSMLUG00000025813,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL431977,42696,42980,-,MHC_I,ENSMLUG00000025813,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL432181,8394,8621,-,MHC_I,ENSMLUG00000030632,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL432181,8831,9133,-,MHC_I,ENSMLUG00000030632,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL432181,18228,18494,-,MHC_I,GL432181_1:1,GL432181_1:1,NA,NA,FALSE
MHCI,microbat,GL432181,18709,18762,-,MHC_I,GL432181_1:1,GL432181_1:1,NA,NA,FALSE
MHCI,microbat,GL432181,18767,18862,-,MHC_I,GL432181_1:1,GL432181_1:1,NA,NA,FALSE
MHCI,microbat,GL432181,18873,18989,-,MHC_I,GL432181_1:1,GL432181_1:1,NA,NA,FALSE
MHCI,microbat,GL432244,771,1037,+,MHC_I,ENSMLUG00000025201,NA,protein_coding,aa_OG0000000,TRUE
MHCI,microbat,GL432244,1615,1959,+,IgC1_MHC_I_alpha3,ENSMLUG00000025201,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,A1,91669006,91669305,-,IgC1_MHC_I_alpha3,ENSFCAG00000026141,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,A1,91671009,91671347,-,MHC_I,ENSFCAG00000026141,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,A1,91672448,91672717,-,MHC_I,ENSFCAG00000026141,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,A1,91681964,91682236,-,IgC1_MHC_I_alpha3,A1_1:1,A1_1:1,NA,NA,FALSE
MHCI,cat,A1,91682245,91682427,-,IgC1_MHC_Ia_H2Db_H2Ld,A1_1:1,A1_1:1,NA,NA,FALSE
MHCI,cat,AANG04000613.1,20823,20975,+,IgC1_MHC_I_alpha3,AANG04000613.1_1:1,AANG04000613.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04000776.1,13559,13881,+,MHC_I,ENSFCAG00000044472;101082822,NA;LOC101082822,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,AANG04000776.1,14029,14223,+,MHC_I,ENSFCAG00000044472;101082822,NA;LOC101082822,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,AANG04000776.1,14888,15193,+,IgC1_MHC_I_alpha3,ENSFCAG00000044472;101082822,NA;LOC101082822,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,AANG04000776.1,34704,35030,-,IgC1_MHC_Ib_HLA-E,AANG04000776.1_1:1,AANG04000776.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04000776.1,35681,35920,-,MHC_I,AANG04000776.1_1:1,AANG04000776.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04000776.1,35923,35994,-,MHC_I,AANG04000776.1_1:1,AANG04000776.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04000776.1,36336,36666,-,MHC_I,AANG04000776.1_1:1,AANG04000776.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04001619.1,5993,6268,+,MHC_I,AANG04001619.1_1:1,AANG04001619.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04001619.1,7654,7874,+,IgC1_MHC_Ia_HLA-F,AANG04001619.1_1:1,AANG04001619.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04001619.1,7883,8011,+,IgC1_MHC_I_alpha3,AANG04001619.1_1:1,AANG04001619.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04001699.1,540,668,-,IgC1_MHC_I_alpha3,AANG04001699.1_1:1,AANG04001699.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04001699.1,2280,2555,-,MHC_I,AANG04001699.1_1:1,AANG04001699.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04002080.1,18770,19045,+,MHC_I,AANG04002080.1_1:1,AANG04002080.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04002080.1,20658,20786,+,IgC1_MHC_I_alpha3,AANG04002080.1_1:1,AANG04002080.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04002080.1,30828,31142,-,IgC1_MHC_I_alpha3,ENSFCAG00000000629,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04002080.1,31718,31987,-,MHC_I,ENSFCAG00000000629,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04002080.1,32140,32421,-,MHC_I,ENSFCAG00000000629,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04002642.1,8019,8147,+,IgC1_MHC_I_alpha3,AANG04002642.1_1:1,AANG04002642.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04003126.1,63096,63410,-,IgC1_MHC_I_alpha3,ENSFCAG00000044738,FLAI-K,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04003126.1,63979,64248,-,MHC_I,ENSFCAG00000044738,FLAI-K,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04003126.1,64445,64720,-,MHC_I,ENSFCAG00000044738,FLAI-K,protein_coding,aa_OG0000000,TRUE
MHCI,cat,AANG04003605.1,7242,7370,+,IgC1_MHC_I_alpha3,AANG04003605.1_1:1,AANG04003605.1_1:1,NA,NA,FALSE
MHCI,cat,AANG04003605.1,51860,52135,+,MHC_I,ENSFCAG00000044461;111558971,NA;LOC111558971,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,AANG04003605.1,52355,52569,+,MHC_I,ENSFCAG00000044461;111558971,NA;LOC111558971,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,AANG04003605.1,53223,53580,+,IgC1_MHC_I_alpha3,111558971,LOC111558971,pseudogene,aa_OG0000000,TRUE
MHCI,cat,B2,31239942,31240214,+,MHC_I,109500088,LOC109500088,mRNA,aa_OG0036254,TRUE
MHCI,cat,B2,31240414,31240690,+,MHC_I,109499531,LOC109499531,pseudogene,aa_OG0036353,TRUE
MHCI,cat,B2,31241206,31241516,+,IgC1_MHC_I_alpha3,109499531,LOC109499531,NA,NA,FALSE
MHCI,cat,B2,31247772,31248018,-,IgC1_MHC_Ia_H2Db_H2Ld,B2_1:2,B2_1:2,NA,NA,FALSE
MHCI,cat,B2,31931297,31931611,-,IgC1_MHC_I_alpha3,ENSFCAG00000000877;101080285,NA;LOC101080285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cat,B2,31932183,31932451,-,MHC_I,ENSFCAG00000000877;101080285,NA;LOC101080285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cat,B2,31932723,31932845,-,MHC_I,ENSFCAG00000000877;101080285,NA;LOC101080285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cat,B2,31932851,31933000,-,MHC_I,ENSFCAG00000000877;101080285,NA;LOC101080285,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cat,B2,31960016,31960319,+,IgC1_MHC_Ib_HLA-Cw3-4,B2_2:1,B2_2:1,NA,NA,FALSE
MHCI,cat,B2,31999288,31999602,-,IgC1_MHC_I_alpha3,ENSFCAG00000000877,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32000180,32000453,-,MHC_I,ENSFCAG00000000877,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32000656,32000931,-,MHC_I,ENSFCAG00000000877,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32067004,32067276,+,MHC_I,ENSFCAG00000015379,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32067612,32067894,+,MHC_I,ENSFCAG00000015379,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32068464,32068778,+,IgC1_MHC_I_alpha3,ENSFCAG00000015379,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32105578,32105853,+,MHC_I,ENSFCAG00000027242,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32106054,32106320,+,MHC_I,ENSFCAG00000027242,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32472431,32472706,+,MHC_I,ENSFCAG00000045048;101099044,NA;LOC101099044,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cat,B2,32472967,32473136,+,MHC_I,101099044,LOC101099044,pseudogene,aa_OG0000000,TRUE
MHCI,cat,B2,32473777,32474152,+,IgC1_MHC_I_alpha3,101099044,LOC101099044,pseudogene,aa_OG0000000,TRUE
MHCI,cat,B2,32498032,32498312,-,IgC1_MHC_I_alpha3,B2_4:1,B2_4:1,NA,NA,FALSE
MHCI,cat,B2,32524054,32524356,-,IgC1_MHC_I_alpha3,ENSFCAG00000018696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32524961,32525236,-,MHC_I,ENSFCAG00000018696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cat,B2,32525459,32525734,-,MHC_I,ENSFCAG00000018696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860272.1,66792490,66792717,-,IgC1_MHC_Ib_T10_T22_like,KV860272.1_1:1,KV860272.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860309.1,10570618,10570881,-,IgC1_MHC_Ib_T10_T22_like,KV860309.1_1:1,KV860309.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860351.1,9951049,9951309,+,MHC_I,ENSPPRG00000008066;109249401,NA;LOC109249401,protein_coding;mRNA,aa_OG0036353,TRUE
MHCI,leopard,KV860351.1,9951823,9952133,+,IgC1_MHC_I_alpha3,ENSPPRG00000008066,NA,protein_coding,aa_OG0036353,TRUE
MHCI,leopard,KV860351.1,9964399,9964645,-,IgC1_MHC_Ia_H2Db_H2Ld,KV860351.1_1:1,KV860351.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860351.1,10615081,10615395,-,IgC1_MHC_I_alpha3,ENSPPRG00000023936,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10615966,10616031,-,MHC_I,ENSPPRG00000023936,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10616042,10616239,-,MHC_I,ENSPPRG00000023936,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10616505,10616780,-,MHC_I,ENSPPRG00000023936,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10644069,10644247,+,IgC1_MHC_Ia_HLA-B,KV860351.1_2:1,KV860351.1_2:1,NA,NA,FALSE
MHCI,leopard,KV860351.1,10644256,10644372,+,IgC1_MHC_Ib_HLA-Cw3-4,KV860351.1_2:1,KV860351.1_2:1,NA,NA,FALSE
MHCI,leopard,KV860351.1,10682935,10683249,-,IgC1_MHC_I_alpha3,ENSPPRG00000024280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10683829,10684098,-,MHC_I,ENSPPRG00000024280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10684301,10684576,-,MHC_I,ENSPPRG00000024280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10742919,10743107,+,MHC_I,ENSPPRG00000022076;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10743547,10743829,+,MHC_I,ENSPPRG00000022076;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10744400,10744669,+,IgC1_MHC_I_alpha3,ENSPPRG00000022076;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10744674,10744724,+,IgC1_MHC_I_alpha3,ENSPPRG00000022076;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10782107,10782391,+,MHC_I,ENSPPRG00000004260;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10782580,10782849,+,MHC_I,ENSPPRG00000004260;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860351.1,10783418,10783735,+,IgC1_MHC_I_alpha3,ENSPPRG00000004260;109249537,NA;LOC109249537,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860399.1,2284455,2284737,+,MHC_I,ENSPPRG00000020216;109255250,NA;LOC109255250,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860399.1,2285308,2285577,+,IgC1_MHC_I_alpha3,ENSPPRG00000020216;109255250,NA;LOC109255250,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860399.1,2285582,2285632,+,IgC1_MHC_I_alpha3,ENSPPRG00000020216;109255250,NA;LOC109255250,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,636664,636939,+,MHC_I,ENSPPRG00000023506,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,637162,637437,+,MHC_I,ENSPPRG00000023506,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,638043,638342,+,IgC1_MHC_I_alpha3,ENSPPRG00000024424,NA,protein_coding,aa_OG0018025,TRUE
MHCI,leopard,KV860515.1,638554,638829,+,MHC_I,ENSPPRG00000024554,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,639052,639327,+,MHC_I,ENSPPRG00000024554,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,639930,640232,+,IgC1_MHC_I_alpha3,ENSPPRG00000024554,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,669156,669445,+,IgC1_MHC_I_alpha3,KV860515.1_1:1,KV860515.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860515.1,692963,693320,-,IgC1_MHC_I_alpha3,109260561,LOC109260561,pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,693974,694188,-,MHC_I,109260561,LOC109260561,pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,694407,694574,-,MHC_I,109260561,LOC109260561,pseudogene,aa_OG0000000,TRUE
MHCI,leopard,KV860515.1,726504,726779,-,IgC1_MHC_I_alpha3,KV860515.1_2:2,KV860515.1_2:2,NA,NA,FALSE
MHCI,leopard,KV860515.1,726962,727471,-,IgC1_MHC_Ia_HLA-B,KV860515.1_2:2,KV860515.1_2:2,NA,NA,FALSE
MHCI,leopard,KV860515.1,727663,727776,-,IgC1_MHC_I_alpha3,KV860515.1_2:2,KV860515.1_2:2,NA,NA,FALSE
MHCI,leopard,KV860515.1,727785,727945,-,IgC1_MHC_Ia_HLA-F,KV860515.1_2:2,KV860515.1_2:2,NA,NA,FALSE
MHCI,leopard,KV860515.1,728256,728458,-,IgC1_MHC_Ia_H2Db_H2Ld,KV860515.1_2:2,KV860515.1_2:2,NA,NA,FALSE
MHCI,leopard,KV860522.1,503443,503742,-,IgC1_MHC_I_alpha3,ENSPPRG00000017624,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860522.1,505452,505790,-,MHC_I,ENSPPRG00000017624,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860522.1,506894,507163,-,MHC_I,ENSPPRG00000017624,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,2486,2758,+,MHC_I,KV860619.1_1:1,KV860619.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860619.1,4199,4359,+,IgC1_MHC_Ia_HLA-F,KV860619.1_1:1,KV860619.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860619.1,4368,4499,+,IgC1_MHC_I_alpha3,KV860619.1_1:1,KV860619.1_1:1,NA,NA,FALSE
MHCI,leopard,KV860619.1,14478,14792,-,IgC1_MHC_I_alpha3,ENSPPRG00000007369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,15369,15566,-,MHC_I,ENSPPRG00000007369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,15571,15636,-,MHC_I,ENSPPRG00000007369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,15832,16104,-,MHC_I,ENSPPRG00000007369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,83933,84247,-,IgC1_MHC_I_alpha3,ENSPPRG00000007074,NA,protein_coding,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,84512,84826,-,IgC1_MHC_I_alpha3,ENSPPRG00000007074;109261321,NA;LOC109261321,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,85398,85667,-,MHC_I,ENSPPRG00000007074;109261321,NA;LOC109261321,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860619.1,85861,86049,-,MHC_I,ENSPPRG00000007074;109261321,NA;LOC109261321,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860625.1,41669,41944,+,MHC_I,ENSPPRG00000012796;109261353,NA;LOC109261353,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860625.1,42145,42414,+,MHC_I,ENSPPRG00000012796;109261353,NA;LOC109261353,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860625.1,70912,71237,-,IgC1_MHC_Ia_HLA-B,109261351,LOC109261351,pseudogene,rna_OG0059574,TRUE
MHCI,leopard,KV860625.1,71906,72088,-,MHC_I,109261351,LOC109261351,pseudogene,rna_OG0059574,TRUE
MHCI,leopard,KV860625.1,72091,72162,-,MHC_I,109261351,LOC109261351,pseudogene,rna_OG0059574,TRUE
MHCI,leopard,KV860625.1,87596,87835,-,MHC_I,109261351,LOC109261351,pseudogene,rna_OG0059574,TRUE
MHCI,leopard,KV860686.1,32131,32406,+,MHC_I,ENSPPRG00000012417;109261485,NA;LOC109261485,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860686.1,32602,32871,+,MHC_I,ENSPPRG00000012417;109261485,NA;LOC109261485,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860686.1,33443,33802,+,IgC1_MHC_I_alpha3,ENSPPRG00000012417;109261485,NA;LOC109261485,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860693.1,13553,13867,-,IgC1_MHC_I_alpha3,ENSPPRG00000005130;109261493,NA;LOC109261493,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860693.1,14432,14704,-,MHC_I,ENSPPRG00000005130;109261493,NA;LOC109261493,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860693.1,14885,15106,-,MHC_I,ENSPPRG00000005130;109261493,NA;LOC109261493,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,leopard,KV860773.1,15639,16364,+,MHC_I,ENSPPRG00000022769;109261573,NA;LOC109261573,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721773.1,462068,462367,-,IgC1_MHC_I_alpha3,ENSPTIG00000016635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721773.1,464061,464399,-,MHC_I,ENSPTIG00000016635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721773.1,465467,465736,-,MHC_I,ENSPTIG00000016635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721773.1,474538,474810,-,IgC1_MHC_I_alpha3,KE721773.1_1:1,KE721773.1_1:1,NA,NA,FALSE
MHCI,tiger,KE721773.1,474819,475001,-,IgC1_MHC_Ia_H2Db_H2Ld,KE721773.1_1:1,KE721773.1_1:1,NA,NA,FALSE
MHCI,tiger,KE721931.1,21506,21820,-,IgC1_MHC_I_alpha3,ENSPTIG00000007763,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,22392,22661,-,MHC_I,ENSPTIG00000007763,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,22850,23134,-,MHC_I,ENSPTIG00000007763,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,59239,59616,-,IgC1_MHC_I_alpha3,ENSPTIG00000009724;102970351,NA;LOC102970351,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,60184,60465,-,MHC_I,ENSPTIG00000009724;102970351,NA;LOC102970351,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,60791,60979,-,MHC_I,ENSPTIG00000009724;102970351,NA;LOC102970351,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,124283,124558,+,MHC_I,ENSPTIG00000021572;102958279,NA;LOC102958279,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,124751,125020,+,MHC_I,ENSPTIG00000021572;102958279,NA;LOC102958279,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,125576,125974,+,IgC1_MHC_I_alpha3,ENSPTIG00000005713;102958279,NA;LOC102958279,protein_coding;mRNA,aa_OG0018025;aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,164434,164737,-,IgC1_MHC_Ib_HLA-Cw3-4,KE721931.1_1:1,KE721931.1_1:1,NA,NA,FALSE
MHCI,tiger,KE721931.1,191156,191257,+,MHC_I,ENSPTIG00000005961,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,191370,191429,+,MHC_I,ENSPTIG00000005961,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,191701,191970,+,MHC_I,ENSPTIG00000005961,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,192541,192855,+,IgC1_MHC_I_alpha3,ENSPTIG00000005961,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE721931.1,796356,796602,+,IgC1_MHC_Ia_H2Db_H2Ld,KE721931.1_2:1,KE721931.1_2:1,NA,NA,FALSE
MHCI,tiger,KE721931.1,808387,808697,-,IgC1_MHC_I_alpha3,102969876,LOC102969876,mRNA,aa_OG0036353,TRUE
MHCI,tiger,KE721931.1,809211,809471,-,MHC_I,102969876,LOC102969876,mRNA,aa_OG0036353,TRUE
MHCI,tiger,KE721931.1,809671,809943,-,MHC_I,102969876,LOC102969876,mRNA,aa_OG0036353,TRUE
MHCI,tiger,KE722353.1,35182,35451,+,IgC1_MHC_I_alpha3,ENSPTIG00000006000;102966150,NA;LOC102966150,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tiger,KE722353.1,105466,106191,+,MHC_I,ENSPTIG00000005942,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722353.1,106759,107133,+,IgC1_MHC_I_alpha3,ENSPTIG00000005942,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722353.1,141380,141625,+,MHC_I,KE722353.1_1:1,KE722353.1_1:1,NA,NA,FALSE
MHCI,tiger,KE722353.1,143002,143327,+,IgC1_MHC_Ia_HLA-B,KE722353.1_1:1,KE722353.1_1:1,NA,NA,FALSE
MHCI,tiger,KE722353.1,156946,157335,-,IgC1_MHC_I_alpha3,ENSPTIG00000006016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722353.1,157909,158178,-,MHC_I,ENSPTIG00000006016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722353.1,158377,158637,-,MHC_I,ENSPTIG00000006016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,451109,451375,+,MHC_I,ENSPTIG00000017754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,451598,451873,+,MHC_I,ENSPTIG00000017754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,452476,452778,+,IgC1_MHC_I_alpha3,ENSPTIG00000017754,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,501179,501575,-,IgC1_MHC_I_alpha3,102964321,LOC102964321,pseudogene,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,502190,502404,-,MHC_I,102964321,LOC102964321,pseudogene,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,502623,502898,-,MHC_I,ENSPTIG00000017800;102964321,NA;LOC102964321,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,tiger,KE722358.1,533758,534048,-,IgC1_MHC_I_alpha3,KE722358.1_1:2,KE722358.1_1:2,NA,NA,FALSE
MHCI,tiger,KE722358.1,534057,534217,-,IgC1_MHC_I_alpha3,KE722358.1_1:2,KE722358.1_1:2,NA,NA,FALSE
MHCI,tiger,KE722358.1,535661,535936,-,MHC_I,KE722358.1_1:2,KE722358.1_1:2,NA,NA,FALSE
MHCI,dog,7,59708518,59708892,+,MHC_I,ENSCAFG00000018099;490504,NA;LOC490504,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,dog,7,59708991,59709335,+,IgC1_MHC_I_alpha3,ENSCAFG00000018099;490504,NA;LOC490504,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,dog,12,893806,894108,-,IgC1_MHC_I_alpha3,ENSCAFG00000000487,DLA88,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,894680,894952,-,MHC_I,ENSCAFG00000000487,DLA88,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,895150,895434,-,MHC_I,ENSCAFG00000000487,DLA88,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,909270,909481,+,IgC1_MHC_Ia_H2Db_H2Ld,12_1:1,12_1:1,NA,NA,FALSE
MHCI,dog,12,909484,909546,+,IgC1_MHC_I_alpha3,12_1:1,12_1:1,NA,NA,FALSE
MHCI,dog,12,933545,933829,+,MHC_I,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,934099,934365,+,MHC_I,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,934934,935245,+,IgC1_MHC_I_alpha3,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,983830,984114,+,MHC_I,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,984398,984670,+,MHC_I,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,985288,985602,+,IgC1_MHC_I_alpha3,ENSCAFG00000032222,DLA-12,protein_coding,aa_OG0000000,TRUE
MHCI,dog,12,1013360,1013548,-,IgC1_MHC_I_alpha3,ENSCAFG00000000487;106559562,DLA88;LOC106559562,protein_coding;ncRNA,aa_OG0000000,TRUE
MHCI,dog,12,1013550,1013609,-,IgC1_MHC_Ia_H2Db_H2Ld,ENSCAFG00000000487;106559562,DLA88;LOC106559562,protein_coding;ncRNA,aa_OG0000000,TRUE
MHCI,dog,12,1020694,1020966,-,MHC_I,ENSCAFG00000000487;100685196,DLA88;LOC100685196,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dog,12,1021164,1021448,-,MHC_I,ENSCAFG00000000487;100685196,DLA88;LOC100685196,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,dog,18,41142778,41143065,+,MHC_I,ENSCAFG00000008234,DLA-79,protein_coding,aa_OG0000000,TRUE
MHCI,dog,18,41143092,41143535,+,MHC_I,ENSCAFG00000008234,DLA-79,protein_coding,aa_OG0000000,TRUE
MHCI,dog,18,41144092,41144418,+,IgC1_MHC_I_alpha3,ENSCAFG00000008234,DLA-79,protein_coding,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32566016,32566348,-,IgC1_MHC_I_alpha3,ENSVVUG00000011336;112913580,NA;LOC112913580,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32566965,32567240,-,MHC_I,ENSVVUG00000011336;112913580,NA;LOC112913580,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32567519,32567803,-,MHC_I,ENSVVUG00000011336;112913580,NA;LOC112913580,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32588083,32588244,+,IgC1_MHC_Ia_H2Db_H2Ld,NBDQ01000007.1_1:1,NBDQ01000007.1_1:1,NA,NA,FALSE
MHCI,red.fox,NBDQ01000007.1,32588250,32588383,+,IgC1_MHC_I_alpha3,NBDQ01000007.1_1:1,NBDQ01000007.1_1:1,NA,NA,FALSE
MHCI,red.fox,NBDQ01000007.1,32619321,32619683,-,IgC1_MHC_I_alpha3,ENSVVUG00000015147;112913727,NA;LOC112913727,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32620231,32620500,-,MHC_I,ENSVVUG00000015147;112913727,NA;LOC112913727,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32620699,32620983,-,MHC_I,ENSVVUG00000015147;112913727,NA;LOC112913727,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32672396,32672614,+,MHC_I,ENSVVUG00000015149;112913728,NA;LOC112913728,protein_coding;pseudogene,aa_OG0000001;aa_OG0000657,TRUE
MHCI,red.fox,NBDQ01000007.1,32673198,32673524,+,IgC1_MHC_I_alpha3,ENSVVUG00000015149;112913728,NA;LOC112913728,protein_coding;pseudogene,aa_OG0000001;aa_OG0000657,TRUE
MHCI,red.fox,NBDQ01000007.1,32691050,32691334,+,MHC_I,ENSVVUG00000015225;112913584,NA;LOC112913584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32691613,32691888,+,MHC_I,ENSVVUG00000015225;112913584,NA;LOC112913584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32692505,32692837,+,IgC1_MHC_I_alpha3,ENSVVUG00000015225;112913584,NA;LOC112913584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32721578,32721847,-,MHC_I,ENSVVUG00000019402;112913586,NA;LOC112913586,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000007.1,32722175,32722459,-,MHC_I,ENSVVUG00000019402;112913586,NA;LOC112913586,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000014.1,13195014,13195256,-,IgC1_MHC_Ib_HLA-E,NBDQ01000014.1_1:1,NBDQ01000014.1_1:1,NA,NA,FALSE
MHCI,red.fox,NBDQ01000024.1,741929,742093,-,IgC1_MHC_I_alpha3,ENSVVUG00000026795;112918765,NA;LOC112918765,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000024.1,742095,742229,-,IgC1_MHC_I_alpha3,ENSVVUG00000026795;112918765,NA;LOC112918765,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000024.1,742420,742518,-,MHC_I,ENSVVUG00000026795;112918765,NA;LOC112918765,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000303.1,237136,237420,+,MHC_I,ENSVVUG00000002642,NA,protein_coding,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000303.1,237618,237884,+,MHC_I,ENSVVUG00000002642,NA,protein_coding,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01000303.1,238442,238768,+,IgC1_MHC_I_alpha3,ENSVVUG00000002642,NA,protein_coding,aa_OG0000000,TRUE
MHCI,red.fox,NBDQ01030532.1,2,256,+,IgC1_MHC_I_alpha3,NBDQ01030532.1_1:1,NBDQ01030532.1_1:1,NA,NA,FALSE
MHCI,panda,GL192421.1,1909605,1909766,-,IgC1_MHC_1b_Qa-1b,GL192421.1_1:1,GL192421.1_1:1,NA,NA,FALSE
MHCI,panda,GL192444.1,1372392,1372667,+,IgC1_MHC_I_alpha3,ENSAMEG00000010376;105236073,NA;LOC105236073,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,panda,GL193066.1,34453,34830,-,IgC1_MHC_I_alpha3,GL193066.1_1:1,GL193066.1_1:1,NA,NA,FALSE
MHCI,panda,GL193218.1,540179,540457,+,MHC_I,ENSAMEG00000015368,NA,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL193218.1,540678,540818,+,MHC_I,ENSAMEG00000015368;100465524,NA;LOC100465524,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,panda,GL193218.1,540820,541089,+,MHC_I,ENSAMEG00000015368;100465524,NA;LOC100465524,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,panda,GL193218.1,541478,541797,+,IgC1_MHC_I_alpha3,ENSAMEG00000015368;100465524,NA;LOC100465524,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,panda,GL193258.1,146508,146660,+,IgC1_MHC_Ia_HLA-B,GL193258.1_1:1,GL193258.1_1:1,NA,NA,FALSE
MHCI,panda,GL193395.1,610625,610765,+,MHC_I,GL193395.1_1:1,GL193395.1_1:1,NA,NA,FALSE
MHCI,panda,GL193943.1,351753,352006,-,IgC1_MHC_I_alpha3,105241843,LOC105241843,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL193943.1,352629,352757,-,MHC_I,105241843,LOC105241843,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL193943.1,352997,353167,-,MHC_I,105241843,LOC105241843,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL194442.1,227020,227256,+,MHC_I,ENSAMEG00000009534,NA,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL194442.1,233980,234195,+,IgC1_MHC_I_alpha3,ENSAMEG00000009534,NA,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL194954.1,27221,27493,+,MHC_I,100466374,LOC100466374,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL194954.1,28517,29032,+,MHC_I,100466374,LOC100466374,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL194954.1,30593,31039,+,IgC1_MHC_I_alpha3,ENSAMEG00000019473;100466374,NA;LOC100466374,protein_coding;mRNA,aa_OG0028285;aa_OG0000000,TRUE
MHCI,panda,GL195068.1,53498,53773,+,MHC_I,ENSAMEG00000002302;100483904,NA;AIME-1906,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,panda,GL195068.1,53966,54232,+,MHC_I,ENSAMEG00000002302;100483904,NA;AIME-1906,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,panda,GL195068.1,54800,55162,+,IgC1_MHC_I_alpha3,ENSAMEG00000002302;100483904,NA;AIME-1906,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,panda,GL195429.1,43,284,-,IgC1_MHC_Ia_HLA-B,GL195429.1_1:1,GL195429.1_1:1,NA,NA,FALSE
MHCI,panda,GL195812.1,20284,20565,-,IgC1_MHC_Ib_HLA-E,GL195812.1_1:1,GL195812.1_1:1,NA,NA,FALSE
MHCI,panda,GL196150.1,1478,1693,-,IgC1_MHC_I_alpha3,GL196150.1_1:1,GL196150.1_1:1,NA,NA,FALSE
MHCI,panda,GL196150.1,1696,1865,-,IgC1_MHC_Ib_HLA-Cw3-4,GL196150.1_1:1,GL196150.1_1:1,NA,NA,FALSE
MHCI,panda,GL196223.1,5206,5481,+,MHC_I,ENSAMEG00000001714,AIME-152,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL196223.1,5678,5944,+,MHC_I,ENSAMEG00000001714,AIME-152,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL196223.1,6528,6839,+,IgC1_MHC_I_alpha3,ENSAMEG00000001714,AIME-152,protein_coding,aa_OG0000000,TRUE
MHCI,panda,GL196951.1,1160,1513,+,IgC1_MHC_I_alpha3,100470568,AIME-128,mRNA,aa_OG0000000,TRUE
MHCI,panda,GL216523.1,332,415,+,MHC_I,GL216523.1_1:1,GL216523.1_1:1,NA,NA,FALSE
MHCI,panda,GL225562.1,1,105,+,MHC_I,GL225562.1_1:1,GL225562.1_1:1,NA,NA,FALSE
MHCI,panda,GL230867.1,163,225,+,MHC_I,GL230867.1_1:1,GL230867.1_1:1,NA,NA,FALSE
MHCI,panda,GL252624.1,3,125,+,MHC_I,GL252624.1_1:1,GL252624.1_1:1,NA,NA,FALSE
MHCI,panda,GL268820.1,3,104,+,MHC_I,GL268820.1_1:1,GL268820.1_1:1,NA,NA,FALSE
MHCI,ferret,AEYP01114152.1,465,776,+,IgC1_MHC_I_alpha3,106004724,LOC106004724,mRNA,aa_OG0000000,TRUE
MHCI,ferret,AEYP01114152.1,465,776,+,IgC1_MHC_I_alpha3,106004724,LOC106004724,mRNA,aa_OG0000000,TRUE
MHCI,ferret,AEYP01114152.1,465,776,+,IgC1_MHC_I_alpha3,106004724,LOC106004724,mRNA,aa_OG0000000,TRUE
MHCI,ferret,AEYP01114218.1,804,884,+,IgC1_MHC_Ia_H-2Kb,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,AEYP01114218.1,804,884,+,IgC1_MHC_Ia_H-2Kb,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,AEYP01114218.1,804,884,+,IgC1_MHC_Ia_H-2Kb,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,AEYP01114218.1,893,1134,+,IgC1_MHC_I_alpha3,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,AEYP01114218.1,893,1134,+,IgC1_MHC_I_alpha3,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,AEYP01114218.1,893,1134,+,IgC1_MHC_I_alpha3,ENSMPUG00000030574,NA,lincRNA,rna_OG0089196,TRUE
MHCI,ferret,GL896902.1,10660960,10661196,+,MHC_I,ENSMPUG00000013989,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ferret,GL896902.1,10661425,10661700,+,MHC_I,ENSMPUG00000013989,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ferret,GL896902.1,10662305,10662625,+,IgC1_MHC_I_alpha3,ENSMPUG00000013989,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ferret,GL897239.1,173521,173835,+,MHC_I,ENSMPUG00000001105;101689041,NA;LOC101689041,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897239.1,174761,175093,+,MHC_I,ENSMPUG00000001105;101689041,NA;LOC101689041,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897239.1,176920,177255,+,IgC1_MHC_I_alpha3,ENSMPUG00000001105;101689041,NA;LOC101689041,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897273.1,685448,685711,+,MHC_I,ENSMPUG00000011412;101690568,NA;LOC101690568,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897273.1,692625,692890,+,IgC1_MHC_I_alpha3,ENSMPUG00000011412;101690568,NA;LOC101690568,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897304.1,477422,477511,-,IgC1_MHC_I_alpha3,GL897304.1_1:1,GL897304.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897304.1,477956,478273,-,IgC1_MHC_I_alpha3,GL897304.1_1:1,GL897304.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897304.1,478771,479082,-,MHC_I,GL897304.1_1:1,GL897304.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897304.1,479234,479509,-,MHC_I,GL897304.1_1:1,GL897304.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897428.1,32689,32843,-,MHC_I,101693035,LOC101693035,pseudogene,aa_OG0006976,TRUE
MHCI,ferret,GL897428.1,37983,38276,-,IgC1_MHC_I_alpha3,ENSMPUG00000002088,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ferret,GL897428.1,38863,39135,-,MHC_I,ENSMPUG00000002088,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ferret,GL897428.1,71089,71468,+,IgC1_MHC_Ib_HLA-Cw3-4,GL897428.1_1:1,GL897428.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897428.1,152820,152948,+,MHC_I,ENSMPUG00000002106;101693860,NA;LOC101693860,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897428.1,153038,153367,+,MHC_I,ENSMPUG00000002106;101693860,NA;LOC101693860,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ferret,GL897674.1,1046,1150,-,MHC_I,GL897674.1_1:1,GL897674.1_1:1,NA,NA,FALSE
MHCI,ferret,GL897674.1,15606,15812,-,IgC1_MHC_I_alpha3,GL897674.1_1:2,GL897674.1_1:2,NA,NA,FALSE
MHCI,ferret,GL897674.1,15814,15924,-,IgC1_MHC_Ia_HLA-B,GL897674.1_1:2,GL897674.1_1:2,NA,NA,FALSE
MHCI,ferret,GL898240.1,3164,3476,-,IgC1_MHC_I_alpha3,101691705,LOC101691705,pseudogene,aa_OG0000000,TRUE
MHCI,ferret,GL898240.1,4047,4311,-,MHC_I,101691705,LOC101691705,pseudogene,aa_OG0000000,TRUE
MHCI,horse,8,11814410,11814601,-,IgC1_MHC_Ia_RT1-Aa,8_1:1,8_1:1,NA,NA,FALSE
MHCI,horse,20,24773112,24773387,+,MHC_I,20_1:1,20_1:1,NA,NA,FALSE
MHCI,horse,20,29901621,29901881,+,MHC_I,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,29902124,29902390,+,MHC_I,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,29903003,29903287,+,IgC1_MHC_I_alpha3,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,29928040,29928245,-,MHC_I,20_2:1,20_2:1,NA,NA,FALSE
MHCI,horse,20,29958714,29958974,+,MHC_I,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,29959208,29959474,+,MHC_I,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,29960086,29960496,+,IgC1_MHC_I_alpha3,ENSECAG00000034339,MHCX1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,30000848,30001291,+,MHC_I,100051657,LOC100051657,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30001526,30001792,+,MHC_I,100051657,LOC100051657,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30002383,30002700,+,IgC1_MHC_I_alpha3,100051657,LOC100051657,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30055068,30055323,+,IgC1_MHC_I_alpha3,20_3:1,20_3:1,NA,NA,FALSE
MHCI,horse,20,30070462,30070734,+,MHC_I,100034210,EQMHCB2,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30070973,30071236,+,MHC_I,100034210,EQMHCB2,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30071848,30072177,+,IgC1_MHC_I_alpha3,ENSECAG00000034339;100034210,MHCX1;EQMHCB2,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30091505,30091765,+,MHC_I,ENSECAG00000030648;100056231,NA;LOC100056231,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30091998,30092264,+,MHC_I,100056231,LOC100056231,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30092897,30093199,+,IgC1_MHC_I_alpha3,100056231,LOC100056231,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30130415,30130516,-,MHC_I,20_4:1,20_4:1,NA,NA,FALSE
MHCI,horse,20,30182377,30182652,-,IgC1_MHC_I_alpha3,ENSECAG00000019052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,30183297,30183572,-,MHC_I,ENSECAG00000019052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,30185534,30185800,-,MHC_I,ENSECAG00000019052,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,30225783,30226055,+,MHC_I,ENSECAG00000040461;100056099,NA;LOC100056099,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30226293,30226556,+,MHC_I,ENSECAG00000040461;100056099,NA;LOC100056099,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30227151,30227474,+,IgC1_MHC_I_alpha3,ENSECAG00000040461;100056099,NA;LOC100056099,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30250142,30250336,-,MHC_I,20_5:1,20_5:1,NA,NA,FALSE
MHCI,horse,20,30277001,30277261,+,MHC_I,100056062,LOC100056062,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30277491,30277754,+,MHC_I,100056062,LOC100056062,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30278349,30278687,+,IgC1_MHC_I_alpha3,100056062,LOC100056062,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30335871,30336131,+,MHC_I,100034210,EQMHCB2,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30336365,30336625,+,MHC_I,100034210,EQMHCB2,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30337215,30337553,+,IgC1_MHC_I_alpha3,100034210,EQMHCB2,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,30371834,30372106,+,MHC_I,100055941,LOC100055941,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,30372352,30372599,+,MHC_I,100055941,LOC100055941,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,30373193,30373528,+,IgC1_MHC_I_alpha3,100055941,LOC100055941,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31049751,31049864,-,IgC1_MHC_I_alpha3,20_6:1,20_6:1,NA,NA,FALSE
MHCI,horse,20,31059335,31059598,-,MHC_I,20_6:2,20_6:2,NA,NA,FALSE
MHCI,horse,20,31059949,31060158,-,MHC_I,20_6:2,20_6:2,NA,NA,FALSE
MHCI,horse,20,31088475,31088756,-,IgC1_MHC_I_alpha3,ENSECAG00000037934;100054536,NA;LOC100054536,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,horse,20,31089384,31089647,-,MHC_I,ENSECAG00000037934;100054536,NA;LOC100054536,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,horse,20,31089855,31090127,-,MHC_I,ENSECAG00000037934;100054536,NA;LOC100054536,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,horse,20,31135349,31135663,-,IgC1_MHC_I_alpha3,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31136240,31136506,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31143896,31144153,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31200779,31201087,-,IgC1_MHC_I_alpha3,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31201713,31201976,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31202184,31202456,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31256035,31256319,-,IgC1_MHC_I_alpha3,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31256927,31257193,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31264866,31265123,-,MHC_I,ENSECAG00000037934,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31287573,31287929,+,IgC1_MHC_I_alpha3,20_7:1,20_7:1,NA,NA,FALSE
MHCI,horse,20,31300477,31300757,+,MHC_I,111769195,LOC111769195,ncRNA,NA,TRUE
MHCI,horse,20,31343019,31343330,-,IgC1_MHC_I_alpha3,ENSECAG00000037934;100054397,NA;LOC100054397,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31343927,31344349,-,MHC_I,ENSECAG00000037934;100054397,NA;LOC100054397,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31344403,31344696,-,MHC_I,ENSECAG00000037934;100054397,NA;LOC100054397,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31403455,31403724,+,MHC_I,106780911,LOC106780911,pseudogene,NA,TRUE
MHCI,horse,20,31404006,31404206,+,MHC_I,106780911;100054303,LOC106780911;LOC100054303,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31404846,31405127,+,IgC1_MHC_I_alpha3,100054303,LOC100054303,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31443523,31443752,+,MHC_I,20_8:1,20_8:1,NA,NA,FALSE
MHCI,horse,20,31444863,31445209,+,IgC1_MHC_I_alpha3,20_8:1,20_8:1,NA,NA,FALSE
MHCI,horse,20,31457784,31458056,+,MHC_I,ENSECAG00000038583,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31458238,31458513,+,MHC_I,ENSECAG00000038583,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31459119,31459448,+,IgC1_MHC_I_alpha3,ENSECAG00000038583,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31523181,31523468,-,IgC1_MHC_I_alpha3,100050550,EQMCE1,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31524099,31524365,-,MHC_I,ENSECAG00000037934;100050550,NA;EQMCE1,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31524605,31524955,-,MHC_I,ENSECAG00000037934;100050550,NA;EQMCE1,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31556265,31556603,-,IgC1_MHC_I_alpha3,ENSECAG00000017324,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31557199,31557474,-,MHC_I,ENSECAG00000017324,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31557776,31558051,-,MHC_I,ENSECAG00000017324,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31586194,31586397,-,MHC_I,20_9:1,20_9:1,NA,NA,FALSE
MHCI,horse,20,31638680,31638988,-,IgC1_MHC_I_alpha3,100053918,LOC100053918,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31639563,31639838,-,MHC_I,100053918,LOC100053918,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31640049,31640309,-,MHC_I,ENSECAG00000037934;100053918,NA;LOC100053918,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31666622,31666822,+,IgC1_MHC_I_alpha3,20_10:1,20_10:1,NA,NA,FALSE
MHCI,horse,20,31683093,31683395,-,IgC1_MHC_I_alpha3,100053764,LOC100053764,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31684019,31684285,-,MHC_I,100053764,LOC100053764,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31684507,31684767,-,MHC_I,100053764,LOC100053764,pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31701360,31701665,+,IgC1_MHC_I_alpha3,20_11:1,20_11:1,NA,NA,FALSE
MHCI,horse,20,31743090,31743326,+,MHC_I,106780880,LOC106780880,mRNA,aa_OG0000000,TRUE
MHCI,horse,20,31743563,31743820,+,MHC_I,ENSECAG00000011673;ENSECAG00000034395;102149252,NA;MHCB3;LOC102149252,protein_coding;pseudogene,aa_OG0023815;aa_OG0000000;aa_OG0028328,TRUE
MHCI,horse,20,31744451,31744759,+,IgC1_MHC_I_alpha3,ENSECAG00000011673;ENSECAG00000034395;102149252,NA;MHCB3;LOC102149252,protein_coding;pseudogene,aa_OG0023815;aa_OG0000000;aa_OG0028328,TRUE
MHCI,horse,20,31776768,31777028,+,MHC_I,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31777265,31777531,+,MHC_I,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31778160,31778468,+,IgC1_MHC_I_alpha3,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31806098,31806166,-,IgC1_MHC_Ia_HLA-F,20_12:1,20_12:1,NA,NA,FALSE
MHCI,horse,20,31806169,31806396,-,IgC1_MHC_I_alpha3,20_12:1,20_12:1,NA,NA,FALSE
MHCI,horse,20,31823142,31823402,+,MHC_I,ENSECAG00000034395;111769185,MHCB3;LOC111769185,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31823639,31823885,+,MHC_I,ENSECAG00000034395;111769185,MHCB3;LOC111769185,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31824513,31824821,+,IgC1_MHC_I_alpha3,ENSECAG00000034395;111769185,MHCB3;LOC111769185,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,horse,20,31861963,31862270,-,IgC1_MHC_I_alpha3,20_13:1,20_13:1,NA,NA,FALSE
MHCI,horse,20,31884371,31884643,+,MHC_I,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31884876,31885142,+,MHC_I,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31885757,31886071,+,IgC1_MHC_I_alpha3,ENSECAG00000034395,MHCB3,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31916811,31917122,-,IgC1_MHC_I_alpha3,ENSECAG00000038391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31917733,31918014,-,MHC_I,ENSECAG00000038391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31918237,31918498,-,MHC_I,ENSECAG00000038391,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31942629,31942916,+,IgC1_MHC_I_alpha3,20_14:1,20_14:1,NA,NA,FALSE
MHCI,horse,20,31966430,31966609,-,IgC1_MHC_I_alpha3,20_14:2,20_14:2,NA,NA,FALSE
MHCI,horse,20,31980192,31980530,-,IgC1_MHC_I_alpha3,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31981137,31981403,-,MHC_I,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31981614,31981871,-,MHC_I,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,31991163,31991324,+,MHC_I,20_15:1,20_15:1,NA,NA,FALSE
MHCI,horse,20,32015034,32015351,-,IgC1_MHC_I_alpha3,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32015958,32016224,-,MHC_I,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32016462,32016722,-,MHC_I,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32040808,32041041,+,IgC1_MHC_I_alpha3,20_16:1,20_16:1,NA,NA,FALSE
MHCI,horse,20,32059238,32059546,-,IgC1_MHC_I_alpha3,ENSECAG00000019318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32060185,32060451,-,MHC_I,ENSECAG00000019318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32060688,32060948,-,MHC_I,ENSECAG00000019318,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32087663,32087896,+,IgC1_MHC_I_alpha3,20_17:1,20_17:1,NA,NA,FALSE
MHCI,horse,20,32107000,32107173,+,IgC1_MHC_Ib_HLA-H,20_17:2,20_17:2,NA,NA,FALSE
MHCI,horse,20,32135960,32136268,-,IgC1_MHC_I_alpha3,ENSECAG00000016428,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32136910,32137176,-,MHC_I,ENSECAG00000016428,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32137408,32137672,-,MHC_I,ENSECAG00000035532,EQMHCC1,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,32164968,32165105,+,IgC1_MHC_Ib_HLA-H,20_18:1,20_18:1,NA,NA,FALSE
MHCI,horse,20,33360886,33361236,-,IgC1_MHC_I_alpha3,ENSECAG00000033152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,33361584,33361850,-,MHC_I,ENSECAG00000033152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,33362099,33362359,-,MHC_I,ENSECAG00000033152,NA,protein_coding,aa_OG0000000,TRUE
MHCI,horse,20,33476517,33476864,-,IgC1_MHC_I_alpha3,100060096,LOC100060096,NA,NA,FALSE
MHCI,horse,20,33477110,33477406,-,MHC_I,100060096,LOC100060096,mRNA,aa_OG0034614,TRUE
MHCI,horse,20,33477432,33477626,-,MHC_I,100060096,LOC100060096,mRNA,aa_OG0034614,TRUE
MHCI,horse,20,33477691,33477735,-,MHC_I,100060096,LOC100060096,mRNA,aa_OG0034614,TRUE
MHCI,horse,20,33477738,33477941,-,MHC_I,100060096,LOC100060096,mRNA,aa_OG0034614,TRUE
MHCI,horse,21,4877649,4877918,-,IgC1_MHC_I_alpha3,21_1:1,21_1:1,NA,NA,FALSE
MHCI,horse,21,4879039,4879314,-,MHC_I,21_1:1,21_1:1,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_1466,104346,104657,+,MHC_I,ENSTTRG00000016921,NA,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_1466,104856,105122,+,MHC_I,ENSTTRG00000016921,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dolphin,GeneScaffold_1466,105707,106072,+,IgC1_MHC_I_alpha3,ENSTTRG00000016921,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dolphin,GeneScaffold_1466,118169,118530,-,IgC1_MHC_I_alpha3,GeneScaffold_1466_2:1,GeneScaffold_1466_2:1,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_1466,123459,123604,+,IgC1_MHC_Ia_HLA-B,GeneScaffold_1466_2:2,GeneScaffold_1466_2:2,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_1486,53638,53801,+,IgC1_MHC_Ia_HLA-B,GeneScaffold_1486_1:1,GeneScaffold_1486_1:1,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_1803,120049,120342,-,IgC1_MHC_I_alpha3,ENSTTRG00000008030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dolphin,GeneScaffold_1803,122649,123005,-,MHC_I,ENSTTRG00000008030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dolphin,GeneScaffold_1803,124387,124707,-,MHC_I,ENSTTRG00000008030,NA,protein_coding,aa_OG0000000,TRUE
MHCI,dolphin,GeneScaffold_3473,22234,22560,-,IgC1_MHC_I_alpha3,GeneScaffold_3473_1:2,GeneScaffold_3473_1:2,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_3473,23138,23404,-,MHC_I,GeneScaffold_3473_1:2,GeneScaffold_3473_1:2,NA,NA,FALSE
MHCI,dolphin,GeneScaffold_3473,23602,23901,-,MHC_I,GeneScaffold_3473_1:2,GeneScaffold_3473_1:2,NA,NA,FALSE
MHCI,dolphin,NC_047036.1,157103412,157103732,+,MHC_I,109552729,LOC109552729,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047036.1,157105114,157105470,+,MHC_I,109552729,LOC109552729,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047036.1,157107782,157108075,+,IgC1_MHC_I_alpha3,109552729,LOC109552729,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047041.1,38827111,38827281,+,MHC_I,NC_047041.1_1:1,NC_047041.1_1:1,NA,NA,FALSE
MHCI,dolphin,NC_047041.1,38828104,38828478,+,IgC1_MHC_I_alpha3,NC_047041.1_1:1,NC_047041.1_1:1,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22522487,22522798,+,MHC_I,117313794,LOC117313794,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22522997,22523263,+,MHC_I,117313794,LOC117313794,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22523848,22524213,+,IgC1_MHC_I_alpha3,117313794,LOC117313794,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22536263,22536531,-,IgC1_MHC_I_alpha3,NC_047043.1_1:1,NC_047043.1_1:1,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22541329,22541471,+,IgC1_MHC_Ia_HLA-B,NC_047043.1_1:2,NC_047043.1_1:2,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22568962,22569273,+,MHC_I,117313795,LOC117313795,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22569472,22569738,+,MHC_I,117313795,LOC117313795,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22570324,22570689,+,IgC1_MHC_I_alpha3,117313795,LOC117313795,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22582755,22583089,-,IgC1_MHC_I_alpha3,NC_047043.1_2:1,NC_047043.1_2:1,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22588055,22588197,+,IgC1_MHC_Ia_HLA-B,NC_047043.1_2:2,NC_047043.1_2:2,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22613672,22613983,+,MHC_I,117313796,LOC117313796,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22614182,22614448,+,MHC_I,117313796,LOC117313796,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22615034,22615360,+,IgC1_MHC_I_alpha3,117313796,LOC117313796,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,22627467,22627801,-,IgC1_MHC_I_alpha3,NC_047043.1_3:1,NC_047043.1_3:1,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,22631956,22632101,+,IgC1_MHC_Ia_HLA-B,NC_047043.1_3:2,NC_047043.1_3:2,NA,NA,FALSE
MHCI,dolphin,NC_047043.1,23065272,23065598,-,IgC1_MHC_I_alpha3,117313809,LOC117313809,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,23066183,23066449,-,MHC_I,117313809,LOC117313809,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047043.1,23066648,23066947,-,MHC_I,117313809,LOC117313809,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NC_047044.1,57494388,57494705,+,MHC_I,NC_047044.1_1:1,NC_047044.1_1:1,NA,NA,FALSE
MHCI,dolphin,NW_022983463.1,51660,51971,+,MHC_I,101320295,LOC101320295,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,52170,52436,+,MHC_I,101320295,LOC101320295,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,53021,53347,+,IgC1_MHC_I_alpha3,101320295,LOC101320295,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,84012,84377,-,IgC1_MHC_I_alpha3,117310985,LOC117310985,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,84962,85228,-,MHC_I,117310985,LOC117310985,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,85427,85738,-,MHC_I,117310985,LOC117310985,mRNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,103000,103142,-,IgC1_MHC_Ia_HLA-B,NW_022983463.1_2:1,NW_022983463.1_2:1,NA,NA,FALSE
MHCI,dolphin,NW_022983463.1,108123,108443,+,IgC1_MHC_I_alpha3,NW_022983463.1_2:2,NW_022983463.1_2:2,NA,NA,FALSE
MHCI,dolphin,NW_022983463.1,119879,120205,-,IgC1_MHC_I_alpha3,117310986,LOC117310986,misc_RNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,120786,121052,-,MHC_I,117310986,LOC117310986,misc_RNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,121251,121562,-,MHC_I,117310986,LOC117310986,misc_RNA,aa_OG0000000,TRUE
MHCI,dolphin,NW_022983463.1,138852,139015,-,IgC1_MHC_Ia_HLA-B,NW_022983463.1_3:1,NW_022983463.1_3:1,NA,NA,FALSE
MHCI,dolphin,scaffold_113936,86427,86597,+,MHC_I,scaffold_113936_1:1,scaffold_113936_1:1,NA,NA,FALSE
MHCI,dolphin,scaffold_113936,87420,87794,+,IgC1_MHC_I_alpha3,scaffold_113936_1:1,scaffold_113936_1:1,NA,NA,FALSE
MHCI,dolphin,scaffold_19498,471,782,+,MHC_I,scaffold_19498_1:1,scaffold_19498_1:1,NA,NA,FALSE
MHCI,dolphin,scaffold_19498,995,1246,+,MHC_I,scaffold_19498_1:1,scaffold_19498_1:1,NA,NA,FALSE
MHCI,dolphin,scaffold_82966,8492,8826,-,IgC1_MHC_I_alpha3,scaffold_82966_1:1,scaffold_82966_1:1,NA,NA,FALSE
MHCI,cow,7,40401191,40401475,-,IgC1_MHC_I_alpha3,ENSBTAG00000004815,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,7,40405461,40405757,-,MHC_I,ENSBTAG00000004815,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,7,40406812,40407081,-,MHC_I,ENSBTAG00000004815,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,7,40433294,40433563,-,MHC_I,ENSBTAG00000004815,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,20,60883117,60883314,-,MHC_I,20_1:1,20_1:1,NA,NA,FALSE
MHCI,cow,21,34272856,34273125,+,MHC_I,21_1:1,21_1:1,NA,NA,FALSE
MHCI,cow,23,27782717,27782944,+,MHC_I,767904,MGC126945,mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27783292,27783408,+,MHC_I,767904,MGC126945,mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27783414,27783536,+,MHC_I,767904,MGC126945,mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27784446,27784666,+,IgC1_MHC_I_alpha3,767904,MGC126945,mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27830223,27830495,+,MHC_I,ENSBTAG00000005182,BoLA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,27830689,27830955,+,MHC_I,ENSBTAG00000005182;ENSBTAG00000054754,BoLA;bta-mir-10167,protein_coding;miRNA,aa_OG0000000,TRUE
MHCI,cow,23,27833429,27833719,+,IgC1_MHC_I_alpha3,ENSBTAG00000005182,BoLA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,27872565,27872843,+,MHC_I,ENSBTAG00000012208,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,27872860,27873282,+,MHC_I,ENSBTAG00000012208,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,27873830,27874159,+,IgC1_MHC_I_alpha3,ENSBTAG00000012208,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,27898888,27899160,+,MHC_I,ENSBTAG00000001476;788634,NA;LOC788634,protein_coding;mRNA,aa_OG0037130;aa_OG0000000,TRUE
MHCI,cow,23,27899370,27899638,+,MHC_I,ENSBTAG00000001476;788634,NA;LOC788634,protein_coding;mRNA,aa_OG0037130;aa_OG0000000,TRUE
MHCI,cow,23,27900543,27900869,+,IgC1_MHC_I_alpha3,ENSBTAG00000001476;788634,NA;LOC788634,protein_coding;mRNA,aa_OG0037130;aa_OG0000000,TRUE
MHCI,cow,23,27943948,27944220,+,MHC_I,ENSBTAG00000007075;533049,NA;BOLA,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27944427,27944711,+,MHC_I,ENSBTAG00000007075;533049,NA;BOLA,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cow,23,27945250,27945618,+,IgC1_MHC_I_alpha3,ENSBTAG00000007075;533049,NA;BOLA,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,cow,23,28055565,28055837,+,MHC_I,ENSBTAG00000007075,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28056034,28056308,+,MHC_I,ENSBTAG00000007075,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28057544,28057930,+,IgC1_MHC_I_alpha3,ENSBTAG00000007075,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28496323,28496592,+,MHC_I,ENSBTAG00000038619,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28498603,28498878,+,MHC_I,ENSBTAG00000038619,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28499675,28499977,+,IgC1_MHC_I_alpha3,ENSBTAG00000038619,NA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28525688,28525998,-,IgC1_MHC_1b_Qa-1b,ENSBTAG00000005146;101905956,NA;LOC101905956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cow,23,28526864,28527179,-,MHC_I,ENSBTAG00000005146;101905956,NA;LOC101905956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cow,23,28527328,28527594,-,MHC_I,ENSBTAG00000005146;101905956,NA;LOC101905956,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,cow,23,28549965,28550357,-,IgC1_MHC_I_alpha3,ENSBTAG00000019386,BOLA-NC1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28551185,28551454,-,MHC_I,ENSBTAG00000019386,BOLA-NC1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28551605,28551925,-,MHC_I,ENSBTAG00000019386,BOLA-NC1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28571780,28572106,-,IgC1_MHC_I_alpha3,614091,LOC614091,pseudogene,aa_OG0002945,TRUE
MHCI,cow,23,28588511,28588831,-,IgC1_MHC_I_alpha3,614091,LOC614091,pseudogene,aa_OG0002945,TRUE
MHCI,cow,23,28590705,28590836,-,MHC_I,614091,LOC614091,pseudogene,aa_OG0002945,TRUE
MHCI,cow,23,28592278,28592490,-,MHC_I,614091,LOC614091,pseudogene,aa_OG0002945,TRUE
MHCI,cow,23,28620220,28620555,-,IgC1_MHC_I_alpha3,23_1:1,23_1:1,NA,NA,FALSE
MHCI,cow,23,28665043,28665381,-,IgC1_MHC_I_alpha3,ENSBTAG00000020116,JSP.1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28666238,28666552,-,MHC_I,ENSBTAG00000020116,JSP.1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28666701,28667033,-,MHC_I,ENSBTAG00000020116,JSP.1,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28721823,28722131,-,IgC1_MHC_I_alpha3,ENSBTAG00000002069,BOLA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28723050,28723490,-,MHC_I,ENSBTAG00000002069,BOLA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,28723616,28723888,-,MHC_I,ENSBTAG00000002069,BOLA,protein_coding,aa_OG0000000,TRUE
MHCI,cow,23,30624266,30624511,-,IgC1_MHC_I_alpha3,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,cow,23,30626337,30626489,-,MHC_I,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,cow,23,30696629,30696990,-,IgC1_MHC_I_alpha3,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,cow,23,30697562,30697690,-,MHC_I,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,cow,23,30729787,30730137,-,IgC1_MHC_I_alpha3,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,cow,23,30730687,30730894,-,MHC_I,617979,LOC617979,pseudogene,aa_OG0000009,TRUE
MHCI,goat,7,70176490,70176759,+,MHC_I,ENSCHIG00000016951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,7,70177835,70178131,+,MHC_I,ENSCHIG00000016951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,7,70185229,70185507,+,IgC1_MHC_I_alpha3,ENSCHIG00000016951,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,15,66418413,66418649,-,MHC_I,15_1:1,15_1:1,NA,NA,FALSE
MHCI,goat,20,60896868,60897047,-,MHC_I,20_1:1,20_1:1,NA,NA,FALSE
MHCI,goat,23,16848419,16848574,+,MHC_I,ENSCHIG00000018153,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,16848773,16849033,+,MHC_I,ENSCHIG00000018153,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,16849926,16850255,+,IgC1_MHC_I_alpha3,ENSCHIG00000018153,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,19220923,19221129,+,MHC_I,102176654,LOC102176654,pseudogene,rna_OG0060636,TRUE
MHCI,goat,23,19221700,19222040,+,IgC1_MHC_I_alpha3,102176654,LOC102176654,pseudogene,rna_OG0060636,TRUE
MHCI,goat,23,19255297,19255509,+,MHC_I,102176086,LOC102176086,pseudogene,rna_OG0060636,TRUE
MHCI,goat,23,19256050,19256391,+,IgC1_MHC_I_alpha3,102176086,LOC102176086,pseudogene,rna_OG0060636,TRUE
MHCI,goat,23,19317601,19317792,+,MHC_I,102175817,LOC102175817,mRNA,aa_OG0000000,TRUE
MHCI,goat,23,19318342,19318701,+,IgC1_MHC_I_alpha3,102175817,LOC102175817,mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20906117,20906434,-,IgC1_MHC_I_alpha3,ENSCHIG00000008016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,20906996,20907262,-,MHC_I,ENSCHIG00000008016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,20907474,20907746,-,MHC_I,ENSCHIG00000008016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,20932350,20932667,-,IgC1_MHC_I_alpha3,102180584,LOC102180584,mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20933253,20933522,-,MHC_I,102180584,LOC102180584,mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20933743,20933994,-,MHC_I,102180584,LOC102180584,mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20954402,20954743,-,IgC1_MHC_I_alpha3,ENSCHIG00000021899;102183314,NA;LOC102183314,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20956021,20956287,-,MHC_I,ENSCHIG00000021899;102183314,NA;LOC102183314,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,20956481,20956738,-,MHC_I,ENSCHIG00000021899;102183314,NA;LOC102183314,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,21329502,21329774,+,MHC_I,ENSCHIG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21329975,21330232,+,MHC_I,ENSCHIG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21331130,21331414,+,IgC1_MHC_I_alpha3,ENSCHIG00000019467,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21386189,21386401,+,MHC_I,108633433,LOC108633433,pseudogene,aa_OG0005509,TRUE
MHCI,goat,23,21387845,21387976,+,MHC_I,108633433,LOC108633433,pseudogene,aa_OG0005509,TRUE
MHCI,goat,23,21388529,21388866,+,IgC1_MHC_I_alpha3,108633433,LOC108633433,pseudogene,aa_OG0005509,TRUE
MHCI,goat,23,21399069,21399329,+,MHC_I,ENSCHIG00000009614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21399522,21399788,+,MHC_I,ENSCHIG00000009614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21400659,21400994,+,IgC1_MHC_I_alpha3,ENSCHIG00000009614,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21432333,21432593,+,MHC_I,ENSCHIG00000010779,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21432786,21433157,+,MHC_I,ENSCHIG00000010779,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21433913,21434254,+,IgC1_MHC_I_alpha3,ENSCHIG00000010779,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21459360,21459683,+,MHC_I,ENSCHIG00000018785;108633462,NA;LOC108633462,protein_coding;mRNA,aa_OG0000000;aa_OG0035461,TRUE
MHCI,goat,23,21459883,21460149,+,MHC_I,ENSCHIG00000018785,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21460922,21461359,+,IgC1_MHC_I_alpha3,ENSCHIG00000018785,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21489462,21489758,-,IgC1_MHC_I_alpha3,ENSCHIG00000024673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21490553,21490828,-,MHC_I,ENSCHIG00000024673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21492820,21493089,-,MHC_I,ENSCHIG00000024673,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21924774,21925127,-,IgC1_MHC_I_alpha3,ENSCHIG00000019468,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21925722,21925988,-,MHC_I,ENSCHIG00000019468,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21926183,21926455,-,MHC_I,ENSCHIG00000019468,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21968615,21968943,-,IgC1_MHC_I_alpha3,ENSCHIG00000024364,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21969534,21969812,-,MHC_I,ENSCHIG00000024364,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21970003,21970370,-,MHC_I,ENSCHIG00000024364,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21973912,21974265,-,IgC1_MHC_I_alpha3,ENSCHIG00000018894;102170045,NA;LOC102170045,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,21974835,21975101,-,MHC_I,ENSCHIG00000018894;102170045,NA;LOC102170045,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,21975295,21975723,-,MHC_I,ENSCHIG00000024364;ENSCHIG00000018894,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21979932,21980286,-,IgC1_MHC_I_alpha3,ENSCHIG00000011908,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21980904,21981173,-,MHC_I,ENSCHIG00000011908,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,21981369,21981641,-,MHC_I,ENSCHIG00000011908;102170045,NA;LOC102170045,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,goat,23,22007272,22007601,-,IgC1_MHC_I_alpha3,ENSCHIG00000012657,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22008187,22008444,-,MHC_I,ENSCHIG00000012657,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22008647,22008919,-,MHC_I,ENSCHIG00000012657,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22012519,22012788,-,IgC1_MHC_I_alpha3,102176414,LOC102176414,pseudogene,aa_OG0003262,TRUE
MHCI,goat,23,22013476,22013749,-,MHC_I,102176414,LOC102176414,pseudogene,aa_OG0003262,TRUE
MHCI,goat,23,22135311,22135612,-,IgC1_MHC_I_alpha3,ENSCHIG00000018938;108633468,NA;LOC108633468,protein_coding;pseudogene,rna_OG0125277;rna_OG0178110,TRUE
MHCI,goat,23,22136196,22136417,-,MHC_I,ENSCHIG00000018938;108633468,NA;LOC108633468,protein_coding;pseudogene,rna_OG0125277;rna_OG0178110,TRUE
MHCI,goat,23,22136632,22136903,-,MHC_I,ENSCHIG00000018938;108633468,NA;LOC108633468,protein_coding;pseudogene,rna_OG0125277;rna_OG0178110,TRUE
MHCI,goat,23,22156934,22157224,-,IgC1_MHC_I_alpha3,ENSCHIG00000024246,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22158437,22158802,-,MHC_I,ENSCHIG00000024246,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22158997,22159299,-,MHC_I,ENSCHIG00000024246,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22176262,22176561,-,IgC1_MHC_I_alpha3,ENSCHIG00000020748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22177452,22177802,-,MHC_I,ENSCHIG00000020748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22177990,22178274,-,MHC_I,ENSCHIG00000020748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,goat,23,22198803,22199081,+,IgC1_MHC_Ia_HLA-B,23_1:1,23_1:1,NA,NA,FALSE
MHCI,goat,LWLT01000772.1,3221,3638,-,IgC1_MHC_I_alpha3,ENSCHIG00000000395;102171558,NA;LOC102171558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01000772.1,4399,4770,-,MHC_I,ENSCHIG00000000395;102171558,NA;LOC102171558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01000772.1,4963,5223,-,MHC_I,ENSCHIG00000000395;102171558,NA;LOC102171558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01001610.1,15024,15131,+,MHC_I,ENSCHIG00000010149;102184958,NA;LOC102184958,protein_coding;pseudogene,aa_OG0000000;aa_OG0001844,TRUE
MHCI,goat,LWLT01001610.1,15136,15285,+,MHC_I,ENSCHIG00000010149;102184958,NA;LOC102184958,protein_coding;pseudogene,aa_OG0000000;aa_OG0001844,TRUE
MHCI,goat,LWLT01001610.1,15479,15742,+,MHC_I,ENSCHIG00000010149;102184958,NA;LOC102184958,protein_coding;pseudogene,aa_OG0000000;aa_OG0001844,TRUE
MHCI,goat,LWLT01001610.1,16550,16965,+,IgC1_MHC_I_alpha3,ENSCHIG00000010149;102184958,NA;LOC102184958,protein_coding;pseudogene,aa_OG0000000;aa_OG0001844,TRUE
MHCI,goat,LWLT01003107.1,13708,13908,-,MHC_I,LWLT01003107.1_1:1,LWLT01003107.1_1:1,NA,NA,FALSE
MHCI,goat,LWLT01004239.1,1254,1388,+,MHC_I,102184677,LOC102184677,NA,NA,FALSE
MHCI,goat,LWLT01004239.1,2018,2298,+,IgC1_MHC_I_alpha3,102184677,LOC102184677,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01004239.1,12655,12927,+,MHC_I,ENSCHIG00000021945;102184389,NA;LOC102184389,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01004239.1,13054,13392,+,MHC_I,ENSCHIG00000021945;102184389,NA;LOC102184389,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,goat,LWLT01004239.1,14291,14656,+,IgC1_MHC_I_alpha3,ENSCHIG00000021945;102184389,NA;LOC102184389,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig,2,57256026,57256295,+,MHC_I,ENSSSCG00000035650,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,2,57257743,57258009,+,MHC_I,ENSSSCG00000035650,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,2,57259893,57260189,+,IgC1_MHC_I_alpha3,ENSSSCG00000035650,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,5,43006044,43006195,-,IgC1_MHC_I_alpha3,5_1:1,5_1:1,NA,NA,FALSE
MHCI,pig,7,22824821,22825105,+,MHC_I,100037293,SLA-1,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22825335,22825595,+,MHC_I,100037293,SLA-1,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22826169,22826489,+,IgC1_MHC_I_alpha3,100037293,SLA-1,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22852288,22852535,+,MHC_I,100135029,SLA-5,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22852672,22852974,+,MHC_I,100135029,SLA-5,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22853584,22853901,+,IgC1_MHC_I_alpha3,100135029,SLA-5,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22868487,22868741,+,MHC_I,100515902,LOC100515902,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22868935,22869195,+,MHC_I,100515902,LOC100515902,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22869843,22870109,+,IgC1_MHC_I_alpha3,100515902,LOC100515902,mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22889292,22889576,+,MHC_I,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22889799,22890065,+,MHC_I,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22890640,22890960,+,IgC1_MHC_I_alpha3,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22917383,22917631,+,MHC_I,7_1:1,7_1:1,NA,NA,FALSE
MHCI,pig,7,22917862,22918122,+,MHC_I,7_1:1,7_1:1,NA,NA,FALSE
MHCI,pig,7,22918701,22919098,+,IgC1_MHC_I_alpha3,7_1:1,7_1:1,NA,NA,FALSE
MHCI,pig,7,22938688,22938972,+,MHC_I,ENSSSCG00000001229;100037288,NA;SLA-3,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22939195,22939461,+,MHC_I,100037288,SLA-3,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22940020,22940403,+,IgC1_MHC_I_alpha3,100037288,SLA-3,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,pig,7,22956407,22956691,+,MHC_I,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22956921,22957181,+,MHC_I,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22957791,22958120,+,IgC1_MHC_I_alpha3,ENSSSCG00000001229,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,22974748,22975080,+,MHC_I,ENSSSCG00000024161;100135032,NA;SLA-4,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,22975304,22975570,+,MHC_I,ENSSSCG00000024161;100135032,NA;SLA-4,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,22976366,22976631,+,IgC1_MHC_I_alpha3,ENSSSCG00000024161;100135032,NA;SLA-4,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,23006380,23006796,-,IgC1_MHC_I_alpha3,ENSSSCG00000001341;100135033,NA;SLA-11,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,23007655,23007930,-,MHC_I,ENSSSCG00000001341;100135033,NA;SLA-11,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,23010476,23010802,-,MHC_I,ENSSSCG00000001341;100135033,NA;SLA-11,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig,7,23622798,23623070,+,MHC_I,ENSSSCG00000001396,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23623339,23623605,+,MHC_I,ENSSSCG00000001396,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23624187,23624471,+,IgC1_MHC_I_alpha3,ENSSSCG00000001396,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23636173,23636760,-,IgC1_MHC_I_alpha3,ENSSSCG00000001398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23637356,23638066,-,MHC_I,ENSSSCG00000001398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23647223,23647498,-,IgC1_MHC_I_alpha3,ENSSSCG00000001398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23648082,23648345,-,MHC_I,ENSSSCG00000001398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,7,23648592,23648903,-,MHC_I,ENSSSCG00000001398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig,10,48657390,48657536,+,IgC1_MHC_Ia_H2Db_H2Ld,10_1:1,10_1:1,NA,NA,FALSE
MHCI,bushbaby,GL873550.1,632080,632358,+,MHC_I,105886917;100946825,LOC105886917;LOC100946825,pseudogene;mRNA,aa_OG0000301;aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,632610,632873,+,MHC_I,105886917;100946825,LOC105886917;LOC100946825,pseudogene;mRNA,aa_OG0000301;aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,633699,633989,+,IgC1_MHC_I_alpha3,105886917;100946825,LOC105886917;LOC100946825,pseudogene;mRNA,aa_OG0000301;aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,660188,660535,+,MHC_I,ENSOGAG00000027556,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,660775,661038,+,MHC_I,ENSOGAG00000027556,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,661857,662162,+,IgC1_MHC_I_alpha3,ENSOGAG00000027556,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1434450,1434638,-,MHC_I,GL873550.1_1:1,GL873550.1_1:1,NA,NA,FALSE
MHCI,bushbaby,GL873550.1,1449642,1449950,-,IgC1_MHC_I_alpha3,ENSOGAG00000028468;100952177,NA;LOC100952177,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1450515,1450781,-,MHC_I,ENSOGAG00000028468;100952177,NA;LOC100952177,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1450989,1451255,-,MHC_I,ENSOGAG00000028468;100952177,NA;LOC100952177,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1488569,1488859,-,IgC1_MHC_I_alpha3,ENSOGAG00000033597,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1489391,1489657,-,MHC_I,ENSOGAG00000033597,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1489902,1490174,-,MHC_I,ENSOGAG00000033597,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1549008,1549346,-,IgC1_MHC_I_alpha3,100952822,LOC100952822,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1549940,1550236,-,MHC_I,100952822,LOC100952822,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1550402,1550734,-,MHC_I,100952822,LOC100952822,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1585934,1586221,-,IgC1_MHC_I_alpha3,100953138,LOC100953138,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1586765,1587031,-,MHC_I,100953138,LOC100953138,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1587263,1587535,-,MHC_I,100953138,LOC100953138,mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1701039,1701320,-,IgC1_MHC_I_alpha3,ENSOGAG00000004146,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1701894,1702172,-,MHC_I,ENSOGAG00000004146,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1702356,1702715,-,MHC_I,ENSOGAG00000004146,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1808433,1808723,-,IgC1_MHC_I_alpha3,ENSOGAG00000016630,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1809286,1809561,-,MHC_I,ENSOGAG00000016630,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1809803,1810075,-,MHC_I,ENSOGAG00000016630,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1865850,1866151,-,IgC1_MHC_Ia_HLA-B,100955009,LOC100955009,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1866738,1866872,-,MHC_I,100955009,LOC100955009,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1866875,1867015,-,MHC_I,100955009,LOC100955009,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1867251,1867525,-,MHC_I,100955009,LOC100955009,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1905767,1906117,-,IgC1_MHC_I_alpha3,ENSOGAG00000027064;100955634,NA;LOC100955634,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1906641,1906907,-,MHC_I,ENSOGAG00000027064;100955634,NA;LOC100955634,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1907170,1907406,-,MHC_I,ENSOGAG00000027064;100955634,NA;LOC100955634,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1939349,1939642,-,IgC1_MHC_I_alpha3,ENSOGAG00000026635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1940217,1940483,-,MHC_I,ENSOGAG00000026635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1940719,1940982,-,MHC_I,ENSOGAG00000026635,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,1972898,1973052,-,IgC1_MHC_I_alpha3,GL873550.1_2:1,GL873550.1_2:1,NA,NA,FALSE
MHCI,bushbaby,GL873550.1,2028374,2028670,-,IgC1_MHC_I_alpha3,ENSOGAG00000011712,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2029244,2029510,-,MHC_I,ENSOGAG00000011712,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2029750,2030073,-,MHC_I,ENSOGAG00000011712,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2032804,2032938,-,MHC_I,GL873550.1_3:1,GL873550.1_3:1,NA,NA,FALSE
MHCI,bushbaby,GL873550.1,2114742,2115035,-,IgC1_MHC_I_alpha3,ENSOGAG00000031855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2115608,2115889,-,MHC_I,ENSOGAG00000031855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2116528,2116800,-,MHC_I,ENSOGAG00000031855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2172245,2172523,-,IgC1_MHC_I_alpha3,ENSOGAG00000006768,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2173099,2173365,-,MHC_I,ENSOGAG00000006768,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2173600,2173884,-,MHC_I,ENSOGAG00000006768,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2248488,2248784,-,IgC1_MHC_I_alpha3,ENSOGAG00000034304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2249359,2249529,-,MHC_I,ENSOGAG00000034304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2249898,2250170,-,MHC_I,ENSOGAG00000034304,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2342845,2343123,-,IgC1_MHC_I_alpha3,ENSOGAG00000034852,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2343706,2343972,-,MHC_I,ENSOGAG00000034852,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873550.1,2344190,2344462,-,MHC_I,ENSOGAG00000034852,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bushbaby,GL873690.1,633145,633489,-,IgC1_MHC_I_alpha3,ENSOGAG00000008315;100961793,NA;LOC100961793,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873690.1,635051,635350,-,MHC_I,ENSOGAG00000008315;100961793,NA;LOC100961793,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873690.1,636053,636316,-,MHC_I,ENSOGAG00000008315;100961793,NA;LOC100961793,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bushbaby,GL873742.1,378629,378918,-,IgC1_MHC_I_alpha3,100950481,LOC100950481,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873742.1,379459,379725,-,MHC_I,100950481,LOC100950481,pseudogene,aa_OG0000000,TRUE
MHCI,bushbaby,GL873742.1,379970,380227,-,MHC_I,100950481,LOC100950481,pseudogene,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,221929,222129,+,IgC1_MHC_I_alpha3,105855356,LOC105855356,pseudogene,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,237136,237354,+,MHC_I,105855357,LOC105855357,pseudogene,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,238291,238572,+,IgC1_MHC_I_alpha3,105855357,LOC105855357,pseudogene,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,589233,589499,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,mouse.lemur,6,1381863,1382147,-,IgC1_MHC_I_alpha3,105858107,LOC105858107,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,1382731,1382886,-,MHC_I,105858107,LOC105858107,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,1383303,1383406,-,MHC_I,105858107,LOC105858107,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,6,2126673,2126983,-,IgC1_MHC_Ia_HLA-B,6_2:1,6_2:1,NA,NA,FALSE
MHCI,mouse.lemur,6,3912649,3912744,-,IgC1_MHC_Ia_H2Db_H2Ld,6_2:2,6_2:2,NA,NA,FALSE
MHCI,mouse.lemur,6,3915550,3915645,-,IgC1_MHC_Ia_H2Db_H2Ld,6_2:3,6_2:3,NA,NA,FALSE
MHCI,mouse.lemur,6,106315441,106315653,-,MHC_I,6_2:4,6_2:4,NA,NA,FALSE
MHCI,mouse.lemur,20,833290,833574,-,IgC1_MHC_I_alpha3,ENSMICG00000043829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,834164,834433,-,MHC_I,ENSMICG00000043829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,834667,834939,-,MHC_I,ENSMICG00000043829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,854076,854144,-,IgC1_MHC_I_alpha3,109729797,LOC109729797,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,864323,864604,-,IgC1_MHC_I_alpha3,109729797,LOC109729797,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,869864,870136,-,MHC_I,105855952,LOC105855952,mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,877872,878381,-,IgC1_MHC_I_alpha3,ENSMICG00000045393,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,878969,879166,-,MHC_I,ENSMICG00000045393;109729797,NA;LOC109729797,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,879178,879303,-,IgC1_MHC_I_alpha3,ENSMICG00000045393,NA,NA,NA,FALSE
MHCI,mouse.lemur,20,879886,880158,-,MHC_I,ENSMICG00000045393,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,880391,880663,-,MHC_I,ENSMICG00000045393,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,880922,881104,-,MHC_I,ENSMICG00000045393,NA,NA,NA,FALSE
MHCI,mouse.lemur,20,968232,968504,+,MHC_I,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,968831,969124,+,MHC_I,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,969715,969999,+,IgC1_MHC_I_alpha3,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,978422,978694,+,MHC_I,ENSMICG00000037817,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,978919,979188,+,MHC_I,ENSMICG00000037817,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,979775,980287,+,IgC1_MHC_I_alpha3,ENSMICG00000037817,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,989102,989374,+,MHC_I,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,989612,989881,+,MHC_I,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,990471,990980,+,IgC1_MHC_I_alpha3,ENSMICG00000047281,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,999112,999384,+,MHC_I,105870769,LOC105870769,misc_RNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,999610,999879,+,MHC_I,105870769,LOC105870769,misc_RNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1000444,1000914,+,MHC_I,105870769,LOC105870769,misc_RNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1001141,1001410,+,MHC_I,ENSMICG00000047281;ENSMICG00000041938;105870769,NA;LOC105870769,NA,NA,FALSE
MHCI,mouse.lemur,20,1001971,1002510,+,IgC1_MHC_I_alpha3,ENSMICG00000047281;ENSMICG00000041938;105870769,NA;LOC105870769,protein_coding;misc_RNA,aa_OG0000000;aa_OG0018025,TRUE
MHCI,mouse.lemur,20,1007045,1007317,+,MHC_I,ENSMICG00000047281;105870767,NA;LOC105870767,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1007543,1007812,+,MHC_I,ENSMICG00000047281;105870767,NA;LOC105870767,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1008374,1008694,+,IgC1_MHC_I_alpha3,ENSMICG00000047281;105870767,NA;LOC105870767,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1018152,1018424,+,MHC_I,ENSMICG00000044726;105870762,NA;LOC105870762,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1018685,1018954,+,MHC_I,ENSMICG00000044726;105870762,NA;LOC105870762,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1019544,1019846,+,IgC1_MHC_I_alpha3,ENSMICG00000044726;105870762,NA;LOC105870762,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mouse.lemur,20,1030367,1030666,+,IgC1_MHC_I_alpha3,20_4:1,20_4:1,NA,NA,FALSE
MHCI,mouse.lemur,20,1039698,1039955,+,MHC_I,20_4:2,20_4:2,NA,NA,FALSE
MHCI,mouse.lemur,20,1040190,1040459,+,MHC_I,20_4:2,20_4:2,NA,NA,FALSE
MHCI,mouse.lemur,20,1041060,1041233,+,IgC1_MHC_I_alpha3,20_4:2,20_4:2,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ018983.1,11523,11831,-,IgC1_MHC_I_alpha3,105807219,LOC105807219,mRNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ018983.1,55474,55712,+,IgC1_MHC_I_alpha3,KQ018983.1_1:1,KQ018983.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ019832.1,1826337,1826555,-,IgC1_MHC_Ia_H-2Dd,KQ019832.1_1:1,KQ019832.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ023781.1,25822,26079,+,MHC_I,ENSPCOG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,26319,26585,+,MHC_I,ENSPCOG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,27182,27466,+,IgC1_MHC_I_alpha3,ENSPCOG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,128577,128837,+,MHC_I,KQ023781.1_1:1,KQ023781.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ023781.1,772792,773076,-,IgC1_MHC_I_alpha3,ENSPCOG00000006645;105817284,NA;LOC105817284,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,773723,774007,-,MHC_I,ENSPCOG00000006645;105817284,NA;LOC105817284,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,774184,774498,-,MHC_I,ENSPCOG00000006645;105817284,NA;LOC105817284,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,884291,884534,-,IgC1_MHC_I_alpha3,KQ023781.1_2:1,KQ023781.1_2:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ023781.1,1075107,1075316,+,IgC1_MHC_I_alpha3,KQ023781.1_2:2,KQ023781.1_2:2,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ023781.1,1081377,1081598,+,IgC1_MHC_I_alpha3,105817268,LOC105817268,mRNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1084960,1085217,+,MHC_I,ENSPCOG00000018346;105817294,NA;LOC105817294,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1085464,1085730,+,MHC_I,ENSPCOG00000018346;105817294,NA;LOC105817294,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1086300,1086584,+,IgC1_MHC_I_alpha3,ENSPCOG00000018346;105817294,NA;LOC105817294,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1173484,1173645,+,IgC1_MHC_I_alpha3,KQ023781.1_3:1,KQ023781.1_3:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ023781.1,1372688,1372996,-,IgC1_MHC_I_alpha3,ENSPCOG00000027344,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1373588,1373854,-,MHC_I,ENSPCOG00000027344,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ023781.1,1374091,1374351,-,MHC_I,ENSPCOG00000027344,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,606510,606911,+,IgC1_MHC_I_alpha3,KQ024025.1_1:1,KQ024025.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ024025.1,629380,629664,+,MHC_I,ENSPCOG00000024034,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,629899,630165,+,MHC_I,ENSPCOG00000024034,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,630763,631041,+,IgC1_MHC_I_alpha3,ENSPCOG00000024034,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,674125,674355,+,IgC1_MHC_I_alpha3,KQ024025.1_2:1,KQ024025.1_2:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ024025.1,1357260,1357532,+,MHC_I,ENSPCOG00000019061,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,1357763,1358029,+,MHC_I,ENSPCOG00000019061,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024025.1,1358626,1358910,+,IgC1_MHC_I_alpha3,ENSPCOG00000019061,NA,protein_coding,aa_OG0000000,TRUE
MHCI,coquerels.sifaka,KQ024214.1,953995,954207,+,MHC_I,KQ024214.1_1:1,KQ024214.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ026579.1,676991,677281,+,IgC1_MHC_I_alpha3,KQ026579.1_1:1,KQ026579.1_1:1,NA,NA,FALSE
MHCI,coquerels.sifaka,KQ026579.1,726441,726679,-,IgC1_MHC_Ia_HLA-B,KQ026579.1_1:2,KQ026579.1_1:2,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,AGCE01148620.1,13731,14000,-,MHC_I,AGCE01148620.1_1:1,AGCE01148620.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378122.1,29875163,29875420,-,IgC1_MHC_Ia_HLA-B,JH378122.1_1:1,JH378122.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378128.1,94191,94475,+,IgC1_MHC_I_alpha3,101038644,LOC101038644,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,131755,132021,+,MHC_I,101033054,LOC101033054,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,132261,132527,+,MHC_I,101033054,LOC101033054,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378128.1,132896,133144,+,MHC_I,101033054,LOC101033054,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378128.1,133399,133665,+,MHC_I,101033054,LOC101033054,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,134247,134564,+,IgC1_MHC_I_alpha3,ENSSBOG00000033748;101033054,NA;LOC101033054,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,237030,237302,+,MHC_I,ENSSBOG00000033748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,237545,237811,+,MHC_I,ENSSBOG00000033748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,238395,238673,+,IgC1_MHC_I_alpha3,ENSSBOG00000033748,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,265410,265670,+,MHC_I,ENSSBOG00000019400;101040242,NA;LOC101040242,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,265911,266186,+,MHC_I,ENSSBOG00000019400;101040242,NA;LOC101040242,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,266742,267047,+,IgC1_MHC_I_alpha3,ENSSBOG00000019400;101040242,NA;LOC101040242,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,297680,297925,+,MHC_I,ENSSBOG00000019400,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,298170,298436,+,MHC_I,ENSSBOG00000019400,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,298993,299289,+,IgC1_MHC_I_alpha3,ENSSBOG00000019400,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,343309,343458,+,IgC1_MHC_I_alpha3,JH378128.1_2:1,JH378128.1_2:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378128.1,413787,414041,+,MHC_I,101040877,LOC101040877,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,414286,414552,+,MHC_I,101040877,LOC101040877,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378128.1,415109,415405,+,IgC1_MHC_I_alpha3,101040877,LOC101040877,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378143.1,4193315,4193525,+,IgC1_MHC_I_alpha3,JH378143.1_1:1,JH378143.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378166.1,1534522,1534885,-,IgC1_MHC_I_alpha3,101035914,LOC101035914,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378166.1,1534891,1534989,-,MHC_I,101035914,LOC101035914,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378166.1,1537121,1537420,-,MHC_I,101035914,LOC101035914,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378271.1,1281567,1281764,-,MHC_I,JH378271.1_1:1,JH378271.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378327.1,715135,715419,-,IgC1_MHC_I_alpha3,ENSSBOG00000019728,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378327.1,715996,716313,-,MHC_I,ENSSBOG00000019728,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378327.1,716618,716878,-,MHC_I,ENSSBOG00000019728,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,822,1106,+,IgC1_MHC_I_alpha3,ENSSBOG00000029031;101046108,NA;LOC101046108,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,37358,37618,-,MHC_I,ENSSBOG00000024016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,95552,95830,-,IgC1_MHC_I_alpha3,ENSSBOG00000024016;101043856,NA;LOC101043856,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,96418,96681,-,MHC_I,ENSSBOG00000024016;101043856,NA;LOC101043856,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,96928,97188,-,MHC_I,ENSSBOG00000024016;101043856,NA;LOC101043856,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,150686,150997,-,IgC1_MHC_I_alpha3,104650386,LOC104650386,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,151595,151855,-,MHC_I,104650386,LOC104650386,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,153284,153541,-,MHC_I,ENSSBOG00000024016;104650386,NA;LOC104650386,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,165125,165457,-,IgC1_MHC_I_alpha3,ENSSBOG00000022370;101042893,NA;LOC101042893,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,165989,166237,-,MHC_I,ENSSBOG00000022370;101042893,NA;LOC101042893,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,166638,166895,-,MHC_I,ENSSBOG00000024016;101042893,NA;LOC101042893,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,208740,208955,-,MHC_I,JH378336.1_1:1,JH378336.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,231534,231683,-,IgC1_MHC_I_alpha3,JH378336.1_1:2,JH378336.1_1:2,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,274891,275172,-,IgC1_MHC_I_alpha3,ENSSBOG00000024016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,275739,276005,-,MHC_I,ENSSBOG00000024016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,276322,276582,-,MHC_I,ENSSBOG00000024016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,300854,301096,-,MHC_I,JH378336.1_2:1,JH378336.1_2:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,333342,333620,-,IgC1_MHC_I_alpha3,JH378336.1_2:2,JH378336.1_2:2,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,334204,334470,-,MHC_I,JH378336.1_2:2,JH378336.1_2:2,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,361013,361294,-,IgC1_MHC_Ia_HLA-B,ENSSBOG00000022174;101046412,NA;LOC101046412,protein_coding;pseudogene,rna_OG0127993;aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,361860,362151,-,MHC_I,ENSSBOG00000022174;101046412,NA;LOC101046412,protein_coding;pseudogene,rna_OG0127993;aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,362406,362642,-,MHC_I,ENSSBOG00000022174;101046412,NA;LOC101046412,protein_coding;pseudogene,rna_OG0127993;aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,419423,419719,-,IgC1_MHC_I_alpha3,104650390,LOC104650390,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,420336,420602,-,MHC_I,104650390,LOC104650390,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,455276,455530,-,IgC1_MHC_I_alpha3,104650387,LOC104650387,ncRNA,rna_OG0028569,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,455688,455828,-,MHC_I,104650387,LOC104650387,ncRNA,rna_OG0028569,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,481784,482062,-,IgC1_MHC_I_alpha3,101043216,LOC101043216,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,482664,482930,-,MHC_I,101043216,LOC101043216,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,483169,483441,-,MHC_I,101043216,LOC101043216,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,534868,535017,-,IgC1_MHC_I_alpha3,JH378336.1_3:1,JH378336.1_3:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378336.1,574133,574411,-,IgC1_MHC_I_alpha3,ENSSBOG00000021084,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,574986,575252,-,MHC_I,ENSSBOG00000021084,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378336.1,575490,575750,-,MHC_I,ENSSBOG00000021084,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,14393,14608,+,MHC_I,101052351,LOC101052351,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,14844,15110,+,MHC_I,101052351,LOC101052351,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,15693,15988,+,IgC1_MHC_I_alpha3,101052351,LOC101052351,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,81659,81874,+,MHC_I,101052994,LOC101052994,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,82516,82884,+,IgC1_MHC_I_alpha3,101052994,LOC101052994,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,123989,124249,+,MHC_I,ENSSBOG00000036107,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,124507,124770,+,MHC_I,ENSSBOG00000036107,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,125380,125658,+,IgC1_MHC_I_alpha3,ENSSBOG00000036107,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,170688,170816,+,MHC_I,101053318,LOC101053318,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,171417,171718,+,IgC1_MHC_I_alpha3,101053318,LOC101053318,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378341.1,382306,382536,-,IgC1_MHC_Ia_HLA-F,JH378341.1_1:1,JH378341.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378341.1,508932,509222,+,IgC1_MHC_I_alpha3,104650398,LOC104650398,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,24817,24897,+,MHC_I,101041111,LOC101041111,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,25519,25806,+,IgC1_MHC_I_alpha3,101041111,LOC101041111,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,51684,51827,+,MHC_I,JH378364.1_1:1,JH378364.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378364.1,51967,52227,+,IgC1_MHC_Ia_HLA-F,JH378364.1_1:1,JH378364.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378364.1,132370,132492,+,MHC_I,101041426,LOC101041426,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,132737,132997,+,MHC_I,ENSSBOG00000030843;101041426,NA;LOC101041426,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,133598,133891,+,IgC1_MHC_I_alpha3,ENSSBOG00000030843;101041426,NA;LOC101041426,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378364.1,157296,157457,+,MHC_I,JH378364.1_2:1,JH378364.1_2:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378364.1,158229,158429,+,IgC1_MHC_I_alpha3,JH378364.1_2:1,JH378364.1_2:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378377.1,62042,62197,-,IgC1_MHC_Ia_HLA-F,101029995,LOC101029995,misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378377.1,62854,63120,-,MHC_I,ENSSBOG00000015677;101029995,NA;LOC101029995,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378377.1,63362,63679,-,MHC_I,ENSSBOG00000015677;101029995,NA;LOC101029995,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378377.1,78903,79130,-,MHC_I,104650428,LOC104650428,pseudogene,aa_OG0000013,TRUE
MHCI,bolivian.squirrel.monkey,JH378377.1,99710,99970,-,IgC1_MHC_I_alpha3,101030940,LOC101030940,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378388.1,6295,6579,-,IgC1_MHC_I_alpha3,101047682,LOC101047682,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378388.1,7184,7384,-,MHC_I,101047682,LOC101047682,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378388.1,47872,48142,-,IgC1_MHC_I_alpha3,JH378388.1_1:1,JH378388.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378404.1,19728,19976,+,MHC_I,ENSSBOG00000021922,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378404.1,20231,20506,+,MHC_I,ENSSBOG00000021922,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378404.1,21197,21475,+,IgC1_MHC_I_alpha3,ENSSBOG00000021922,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378409.1,37351,37611,+,MHC_I,101035576,LOC101035576,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378420.1,11736,12029,+,IgC1_MHC_I_alpha3,101040674,LOC101040674,mRNA,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378442.1,16337,16546,-,IgC1_MHC_I_alpha3,JH378442.1_1:1,JH378442.1_1:1,NA,NA,FALSE
MHCI,bolivian.squirrel.monkey,JH378449.1,14918,14992,+,MHC_I,101046733,LOC101046733,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378449.1,14995,15126,+,MHC_I,101046733,LOC101046733,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378449.1,15630,15913,+,IgC1_MHC_I_alpha3,101046733,LOC101046733,pseudogene,aa_OG0000000,TRUE
MHCI,bolivian.squirrel.monkey,JH378488.1,5866,6144,-,IgC1_MHC_I_alpha3,101050865,LOC101050865,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389450.1,15086520,15086774,+,MHC_I,ENSCCAG00000029403;108299891,NA;LOC108299891,protein_coding;pseudogene,aa_OG0000000;aa_OG0000002,TRUE
MHCI,capuchin,KV389450.1,15087013,15087279,+,MHC_I,ENSCCAG00000029403;108299891,NA;LOC108299891,protein_coding;pseudogene,aa_OG0000000;aa_OG0000002,TRUE
MHCI,capuchin,KV389450.1,15087849,15088175,+,IgC1_MHC_I_alpha3,ENSCCAG00000029403;108299891,NA;LOC108299891,protein_coding;pseudogene,aa_OG0000000;aa_OG0000002,TRUE
MHCI,capuchin,KV389450.1,15231833,15232111,+,IgC1_MHC_I_alpha3,108300118,LOC108300118,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389527.1,220076,220795,+,MHC_I,108310058,LOC108310058,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389833.1,1612778,1613023,-,IgC1_MHC_I_alpha3,KV389833.1_1:1,KV389833.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV389866.1,485287,485571,-,IgC1_MHC_I_alpha3,ENSCCAG00000025807,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,486139,486453,-,MHC_I,ENSCCAG00000025807,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,486694,486966,-,MHC_I,ENSCCAG00000025807,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,567462,567770,-,IgC1_MHC_I_alpha3,ENSCCAG00000029615,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,568384,568650,-,MHC_I,ENSCCAG00000029615,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,569309,569575,-,MHC_I,ENSCCAG00000029615,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,652863,653123,+,MHC_I,108290651,LOC108290651,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,653346,653609,+,MHC_I,108290651,LOC108290651,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,654545,654838,+,IgC1_MHC_I_alpha3,108290651,LOC108290651,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,759702,759959,+,IgC1_MHC_Ia_HLA-B,KV389866.1_2:1,KV389866.1_2:1,NA,NA,FALSE
MHCI,capuchin,KV389866.1,965959,966108,-,IgC1_MHC_Ib_HLA-Cw3-4,KV389866.1_2:2,KV389866.1_2:2,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1009110,1009388,-,IgC1_MHC_I_alpha3,ENSCCAG00000037512;108290621,NA;LOC108290621,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1009986,1010249,-,MHC_I,ENSCCAG00000037512;108290621,NA;LOC108290621,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1010509,1010769,-,MHC_I,ENSCCAG00000037512;108290621,NA;LOC108290621,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1047678,1047971,-,IgC1_MHC_I_alpha3,108290580,LOC108290580,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1048569,1048843,-,MHC_I,108290580,LOC108290580,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1049078,1049296,-,MHC_I,108290580,LOC108290580,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1100370,1100609,-,IgC1_MHC_I_alpha3,108290652,LOC108290652,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1101462,1101629,-,MHC_I,ENSCCAG00000019819;108290652,NA;LOC108290652,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1101888,1102160,-,MHC_I,ENSCCAG00000019819;108290652,NA;LOC108290652,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1140294,1140578,-,IgC1_MHC_I_alpha3,108290647,LOC108290647,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1141173,1141439,-,MHC_I,108290647,LOC108290647,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1141672,1141865,-,MHC_I,108290647,LOC108290647,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1177918,1178196,-,IgC1_MHC_I_alpha3,ENSCCAG00000030847;108290624,NA;LOC108290624,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1178773,1179048,-,MHC_I,ENSCCAG00000030847;108290624,NA;LOC108290624,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1179304,1179561,-,MHC_I,ENSCCAG00000030847;108290624,NA;LOC108290624,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1203863,1203955,-,IgC1_MHC_I_alpha3,KV389866.1_4:1,KV389866.1_4:1,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1203967,1204176,-,IgC1_MHC_I_alpha3,KV389866.1_4:1,KV389866.1_4:1,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1247600,1247884,-,IgC1_MHC_I_alpha3,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1248536,1248802,-,MHC_I,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1249068,1249346,-,MHC_I,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1266319,1266588,-,MHC_I,108290581,LOC108290581,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1266837,1267105,-,MHC_I,108290581,LOC108290581,mRNA,aa_OG0000013,TRUE
MHCI,capuchin,KV389866.1,1290985,1291320,-,IgC1_MHC_I_alpha3,108290625,LOC108290625,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1291893,1292156,-,MHC_I,108290625,LOC108290625,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1292400,1292672,-,MHC_I,108290625,LOC108290625,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1327997,1328301,-,IgC1_MHC_I_alpha3,KV389866.1_6:1,KV389866.1_6:1,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1348812,1349376,-,IgC1_MHC_I_alpha3,KV389866.1_6:2,KV389866.1_6:2,NA,NA,FALSE
MHCI,capuchin,KV389866.1,1375705,1375989,-,IgC1_MHC_I_alpha3,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1376594,1376857,-,MHC_I,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1377103,1377438,-,MHC_I,ENSCCAG00000037839,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1411835,1412113,-,IgC1_MHC_I_alpha3,108290620,LOC108290620,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1412706,1412975,-,MHC_I,108290620,LOC108290620,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389866.1,1413230,1413502,-,MHC_I,108290620,LOC108290620,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV389895.1,162279,163010,-,IgC1_MHC_Ia_HLA-B,ENSCCAG00000029802;108291835,NA;LOC108291835,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390150.1,258205,258526,+,MHC_I,108296558,LOC108296558,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390150.1,258833,259105,+,MHC_I,108296558,LOC108296558,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390150.1,259664,259906,+,IgC1_MHC_I_alpha3,108296558,LOC108296558,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390225.1,59784,60057,+,IgC1_MHC_I_alpha3,108297412,LOC108297412,ncRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390225.1,97809,98081,+,MHC_I,ENSCCAG00000037963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390225.1,98324,98590,+,MHC_I,ENSCCAG00000037963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390225.1,99156,99455,+,IgC1_MHC_I_alpha3,ENSCCAG00000037963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,15135,15422,-,IgC1_MHC_I_alpha3,ENSCCAG00000021361;108298050,NA;LOC108298050,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,15972,16238,-,MHC_I,108298050,LOC108298050,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,16477,16749,-,MHC_I,ENSCCAG00000010928;108298050,NA;LOC108298050,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,46862,47098,-,MHC_I,108298056,LOC108298056,ncRNA,rna_OG0028569,TRUE
MHCI,capuchin,KV390303.1,89862,89918,-,IgC1_MHC_I_alpha3,ENSCCAG00000021361,NA,NA,NA,FALSE
MHCI,capuchin,KV390303.1,90752,91018,-,MHC_I,ENSCCAG00000021361,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,91256,91513,-,MHC_I,ENSCCAG00000021361,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,115513,115827,-,IgC1_MHC_Ia_HLA-B,ENSCCAG00000023079;108298054,NA;LOC108298054,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,116365,116640,-,MHC_I,108298054,LOC108298054,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,116865,117194,-,MHC_I,ENSCCAG00000023079;108298054,NA;LOC108298054,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,145327,145602,-,IgC1_MHC_I_alpha3,108298051,LOC108298051,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,146159,146425,-,MHC_I,108298051,LOC108298051,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,215798,216076,-,IgC1_MHC_I_alpha3,ENSCCAG00000022212,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,216654,216920,-,MHC_I,ENSCCAG00000022212,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390303.1,217158,217442,-,MHC_I,ENSCCAG00000022212,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390370.1,156504,156759,+,MHC_I,108298361,LOC108298361,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390370.1,157114,157332,+,MHC_I,108298361,LOC108298361,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390370.1,157334,157384,+,MHC_I,108298361,LOC108298361,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390370.1,157943,158119,+,IgC1_MHC_I_alpha3,108298361,LOC108298361,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,557,835,+,IgC1_MHC_I_alpha3,108298404,LOC108298404,mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,25808,26047,+,MHC_I,108298405,LOC108298405,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,26248,26511,+,MHC_I,108298405,LOC108298405,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,27079,27370,+,IgC1_MHC_I_alpha3,108298405,LOC108298405,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,68088,68363,+,MHC_I,108298407,LOC108298407,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390379.1,68933,69211,+,IgC1_MHC_I_alpha3,108298407,LOC108298407,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390402.1,5675,6019,-,IgC1_MHC_I_alpha3,KV390402.1_1:1,KV390402.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390402.1,7159,7314,-,MHC_I,KV390402.1_1:2,KV390402.1_1:2,NA,NA,FALSE
MHCI,capuchin,KV390402.1,61860,62138,-,IgC1_MHC_I_alpha3,ENSCCAG00000024137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390402.1,62710,62973,-,MHC_I,ENSCCAG00000024137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390402.1,63206,63457,-,MHC_I,ENSCCAG00000024137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390402.1,110924,111085,-,MHC_I,ENSCCAG00000024137;108298499,NA;LOC108298499,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390403.1,78317,78595,-,IgC1_MHC_I_alpha3,ENSCCAG00000024249,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390403.1,79176,79442,-,MHC_I,ENSCCAG00000024249,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390403.1,79685,79960,-,MHC_I,ENSCCAG00000024249,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390403.1,114461,114736,-,IgC1_MHC_I_alpha3,108298503,LOC108298503,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390476.1,7283,7555,+,MHC_I,ENSCCAG00000026941,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390476.1,7794,8060,+,MHC_I,ENSCCAG00000026941,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390476.1,8619,8915,+,IgC1_MHC_I_alpha3,ENSCCAG00000026941,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390476.1,57862,57993,+,IgC1_MHC_I_alpha3,KV390476.1_1:1,KV390476.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390487.1,17202,17480,+,MHC_I,ENSCCAG00000020296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390487.1,17716,17982,+,MHC_I,ENSCCAG00000020296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390487.1,18576,18854,+,IgC1_MHC_I_alpha3,ENSCCAG00000020296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390487.1,66224,66373,+,IgC1_MHC_I_alpha3,KV390487.1_1:1,KV390487.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390494.1,9146,9322,-,IgC1_MHC_I_alpha3,KV390494.1_1:1,KV390494.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390494.1,9881,9931,-,MHC_I,KV390494.1_1:1,KV390494.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390494.1,9933,10127,-,MHC_I,KV390494.1_1:1,KV390494.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390539.1,3856,3975,-,MHC_I,KV390539.1_1:1,KV390539.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390539.1,25001,25132,-,IgC1_MHC_I_alpha3,KV390539.1_1:2,KV390539.1_1:2,NA,NA,FALSE
MHCI,capuchin,KV390547.1,41351,41482,+,IgC1_MHC_I_alpha3,KV390547.1_1:1,KV390547.1_1:1,NA,NA,FALSE
MHCI,capuchin,KV390553.1,8295,8585,-,IgC1_MHC_I_alpha3,ENSCCAG00000022695,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390553.1,9169,9435,-,MHC_I,ENSCCAG00000022695,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390553.1,9673,9945,-,MHC_I,ENSCCAG00000022695,NA,protein_coding,aa_OG0000000,TRUE
MHCI,capuchin,KV390565.1,30649,30957,+,IgC1_MHC_I_alpha3,108298855,LOC108298855,misc_RNA,aa_OG0000000,TRUE
MHCI,capuchin,KV390674.1,10557,10817,-,IgC1_MHC_I_alpha3,108298948,LOC108298948,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390674.1,11444,11718,-,MHC_I,108298948,LOC108298948,pseudogene,aa_OG0000000,TRUE
MHCI,capuchin,KV390674.1,11960,12232,-,MHC_I,108298948,LOC108298948,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ195754.1,1171,1473,-,IgC1_MHC_I_alpha3,ENSANAG00000020962,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ195754.1,2045,2272,-,MHC_I,ENSANAG00000020962;105711395,NA;LOC105711395,NA,NA,FALSE
MHCI,mas.night.monkey,KZ195754.1,2528,2860,-,MHC_I,ENSANAG00000020962;105711395,NA;LOC105711395,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ195773.1,7502,7780,-,IgC1_MHC_I_alpha3,105716043,LOC105716043,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ195964.1,5568,5849,-,IgC1_MHC_I_alpha3,KZ195964.1_1:1,KZ195964.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ195964.1,6613,6804,-,MHC_I,KZ195964.1_1:1,KZ195964.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ196050.1,4019286,4019496,-,IgC1_MHC_I_alpha3,KZ196050.1_1:1,KZ196050.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ198223.1,1665,1925,+,MHC_I,105729137,LOC105729137,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198223.1,2171,2434,+,MHC_I,105729137,LOC105729137,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198223.1,3004,3297,+,IgC1_MHC_I_alpha3,105729137,LOC105729137,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,11571,11855,-,IgC1_MHC_I_alpha3,KZ198595.1_1:1,KZ198595.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ198595.1,42769,43053,-,IgC1_MHC_I_alpha3,105708756,LOC105708756,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,43609,43875,-,MHC_I,105708756,LOC105708756,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,44118,44381,-,MHC_I,105708756,LOC105708756,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,59818,60241,-,IgC1_MHC_Ib_HLA-Cw3-4,105708755,LOC105708755,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,60844,61110,-,MHC_I,105708755,LOC105708755,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,61356,61695,-,MHC_I,105708755,LOC105708755,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,89079,89357,-,IgC1_MHC_I_alpha3,ENSANAG00000021564,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,89961,90227,-,MHC_I,ENSANAG00000021564,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,90466,90738,-,MHC_I,ENSANAG00000021564,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,112718,112953,-,IgC1_MHC_I_alpha3,KZ198595.1_2:1,KZ198595.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ198595.1,113098,113196,-,MHC_I,KZ198595.1_2:1,KZ198595.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ198595.1,159288,159548,+,MHC_I,ENSANAG00000034939;105708761,NA;LOC105708761,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198595.1,159787,160053,+,MHC_I,ENSANAG00000034939;105708761,NA;LOC105708761,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198626.1,283962,284543,-,IgC1_MHC_Ia_HLA-B,ENSANAG00000001909;105732618,NA;LOC105732618,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ198853.1,1458,1517,-,IgC1_MHC_I_alpha3,105709156,LOC105709156,pseudogene,rna_OG0044319,TRUE
MHCI,mas.night.monkey,KZ198853.1,1519,2109,-,MHC_I,105709156,LOC105709156,pseudogene,rna_OG0044319,TRUE
MHCI,mas.night.monkey,KZ199068.1,10438,10713,-,MHC_I,105712288,LOC105712288,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199068.1,10938,11216,-,MHC_I,105712289,LOC105712289,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,11155,11532,-,IgC1_MHC_I_alpha3,ENSANAG00000023291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,12129,12395,-,MHC_I,ENSANAG00000023291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,12649,12921,-,MHC_I,ENSANAG00000023291,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,85013,85297,-,IgC1_MHC_I_alpha3,105734311,LOC105734311,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,85922,86188,-,MHC_I,105734311,LOC105734311,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,86720,86986,-,MHC_I,105734311,LOC105734311,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,181485,181751,+,MHC_I,105734300,LOC105734300,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,182672,182965,+,IgC1_MHC_I_alpha3,105734300,LOC105734300,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199961.1,291484,291759,+,IgC1_MHC_Ia_HLA-B,KZ199961.1_2:1,KZ199961.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,95973,96280,-,IgC1_MHC_Ia_HLA-B,KZ199963.1_1:1,KZ199963.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,96826,97107,-,MHC_I,KZ199963.1_1:1,KZ199963.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,153844,154122,-,IgC1_MHC_I_alpha3,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,154711,154974,-,MHC_I,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,155233,155505,-,MHC_I,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,175773,175997,+,IgC1_MHC_1b_Qa-1b,KZ199963.1_2:1,KZ199963.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,193635,193913,-,IgC1_MHC_I_alpha3,ENSANAG00000030339;105705755,NA;LOC105705755,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,194514,194777,-,MHC_I,ENSANAG00000030339;105705755,NA;LOC105705755,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,195034,195309,-,MHC_I,ENSANAG00000030339;105705755,NA;LOC105705755,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,233209,233539,-,IgC1_MHC_I_alpha3,105705742,LOC105705742,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,234087,234352,-,MHC_I,105705742,LOC105705742,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,234595,234810,-,MHC_I,105705742,LOC105705742,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,265546,265832,-,IgC1_MHC_I_alpha3,KZ199963.1_3:1,KZ199963.1_3:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,266550,266741,-,MHC_I,KZ199963.1_3:1,KZ199963.1_3:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,284832,285110,-,IgC1_MHC_I_alpha3,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,285714,285980,-,MHC_I,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,286219,286479,-,MHC_I,ENSANAG00000030339,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,325390,325716,-,IgC1_MHC_I_alpha3,KZ199963.1_4:1,KZ199963.1_4:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,325831,325971,-,MHC_I,KZ199963.1_4:1,KZ199963.1_4:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ199963.1,369280,369375,-,IgC1_MHC_Ia_HLA-F,105705756,LOC105705756,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,370029,370295,-,MHC_I,105705756,LOC105705756,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ199963.1,370537,370800,-,MHC_I,105705756,LOC105705756,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ200969.1,5011645,5012096,-,IgC1_MHC_I_alpha3,105708125,LOC105708125,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,2848,3108,+,MHC_I,ENSANAG00000026893,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,3348,3614,+,MHC_I,ENSANAG00000026893,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,4216,4494,+,IgC1_MHC_I_alpha3,ENSANAG00000026893,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,44797,44993,+,IgC1_MHC_I_alpha3,KZ201388.1_1:1,KZ201388.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ201388.1,59242,59505,+,MHC_I,ENSANAG00000030343,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,59747,60013,+,MHC_I,ENSANAG00000030343,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,60668,60952,+,IgC1_MHC_I_alpha3,ENSANAG00000030343,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,115896,116036,+,MHC_I,KZ201388.1_2:1,KZ201388.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ201388.1,116115,116390,+,IgC1_MHC_I_alpha3,KZ201388.1_2:1,KZ201388.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ201388.1,164879,165202,-,IgC1_MHC_I_alpha3,105708963,LOC105708963,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,166099,166365,-,MHC_I,105708963,LOC105708963,NA,NA,FALSE
MHCI,mas.night.monkey,KZ201388.1,166605,166721,-,MHC_I,105708963,LOC105708963,NA,NA,FALSE
MHCI,mas.night.monkey,KZ201388.1,174721,174987,-,MHC_I,105708963,LOC105708963,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ201388.1,175226,175498,-,MHC_I,105708963,LOC105708963,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ202147.1,7702,7956,+,MHC_I,KZ202147.1_1:1,KZ202147.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ203175.1,9010,9294,-,IgC1_MHC_I_alpha3,105711154,LOC105711154,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ203234.1,18196,18342,+,IgC1_MHC_I_alpha3,KZ203234.1_1:1,KZ203234.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ203767.1,2,67,+,MHC_I,KZ203767.1_1:1,KZ203767.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ203792.1,4215859,4216564,-,MHC_I,ENSANAG00000028510;105714460,NA;LOC105714460,protein_coding;pseudogene,rna_OG0050248;aa_OG0018025,TRUE
MHCI,mas.night.monkey,KZ203792.1,16044012,16044738,-,MHC_I,ENSANAG00000026162;105732907,NA;LOC105732907,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ203810.1,207835,208122,-,IgC1_MHC_I_alpha3,ENSANAG00000020632;105705485,NA;LOC105705485,protein_coding;mRNA,aa_OG0000000;aa_OG0000001,TRUE
MHCI,mas.night.monkey,KZ204743.1,82839,83141,-,IgC1_MHC_I_alpha3,ENSANAG00000022542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,83710,83976,-,MHC_I,ENSANAG00000022542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,84218,84478,-,MHC_I,ENSANAG00000022542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,111230,111334,-,MHC_I,KZ204743.1_1:1,KZ204743.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,111370,111411,-,MHC_I,KZ204743.1_1:1,KZ204743.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,129502,129780,-,IgC1_MHC_I_alpha3,ENSANAG00000029494,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,130358,130624,-,MHC_I,ENSANAG00000029494,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,130863,131135,-,MHC_I,ENSANAG00000029494,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,157391,157659,-,IgC1_MHC_I_alpha3,105728052,LOC105728052,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,158223,158489,-,MHC_I,105728052,LOC105728052,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,158712,159002,-,MHC_I,105728052,LOC105728052,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,194765,195037,-,IgC1_MHC_I_alpha3,110567264,LOC110567264,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,331540,331836,-,IgC1_MHC_I_alpha3,ENSANAG00000028031,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,332413,332679,-,MHC_I,ENSANAG00000028031,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,332918,333175,-,MHC_I,ENSANAG00000028031,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,391375,391648,-,IgC1_MHC_I_alpha3,105728062,LOC105728062,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,392222,392497,-,MHC_I,105728062,LOC105728062,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,431133,431222,-,MHC_I,KZ204743.1_2:1,KZ204743.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,435592,435864,-,MHC_I,105728062,LOC105728062,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,514309,514440,-,IgC1_MHC_I_alpha3,KZ204743.1_3:1,KZ204743.1_3:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,581176,581472,-,IgC1_MHC_I_alpha3,ENSANAG00000021180,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,582019,582285,-,MHC_I,ENSANAG00000021180,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,582525,582785,-,MHC_I,ENSANAG00000021180,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,629403,629681,-,IgC1_MHC_I_alpha3,105728060,LOC105728060,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,630251,630525,-,MHC_I,105728060,LOC105728060,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,630751,631029,-,MHC_I,105728060,LOC105728060,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,672727,673006,-,IgC1_MHC_I_alpha3,ENSANAG00000024049;105728063,NA;LOC105728063,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,673575,673841,-,MHC_I,ENSANAG00000024049;105728063,NA;LOC105728063,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,674083,674355,-,MHC_I,105728063,LOC105728063,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,743519,743829,-,IgC1_MHC_I_alpha3,KZ204743.1_4:1,KZ204743.1_4:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,769639,769968,-,IgC1_MHC_I_alpha3,KZ204743.1_4:2,KZ204743.1_4:2,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,800786,801067,-,IgC1_MHC_I_alpha3,ENSANAG00000021996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,801634,801909,-,MHC_I,ENSANAG00000021996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,802134,802550,-,MHC_I,ENSANAG00000021996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,837958,838242,-,IgC1_MHC_I_alpha3,ENSANAG00000021854,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,838824,839090,-,MHC_I,ENSANAG00000021854,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,839334,839591,-,MHC_I,ENSANAG00000021854,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,926268,926588,-,IgC1_MHC_I_alpha3,KZ204743.1_5:1,KZ204743.1_5:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,927693,927851,-,MHC_I,KZ204743.1_5:2,KZ204743.1_5:2,NA,NA,FALSE
MHCI,mas.night.monkey,KZ204743.1,987089,987367,-,IgC1_MHC_I_alpha3,ENSANAG00000026542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,987945,988208,-,MHC_I,ENSANAG00000026542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,988434,988706,-,MHC_I,ENSANAG00000026542,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,1021016,1021285,-,IgC1_MHC_I_alpha3,105728049,LOC105728049,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,1021876,1022010,-,MHC_I,105728049,LOC105728049,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ204743.1,1022232,1022490,-,MHC_I,105728049,LOC105728049,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,39816,40109,-,IgC1_MHC_Ib_HLA-Cw3-4,105734215,LOC105734215,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,40676,40939,-,MHC_I,105734215,LOC105734215,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,41183,41426,-,MHC_I,105734215,LOC105734215,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,66356,66622,-,MHC_I,105734215,LOC105734215,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,66866,67126,-,MHC_I,105734215,LOC105734215,misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,93006,93284,-,IgC1_MHC_I_alpha3,ENSANAG00000026873;105734211,NA;LOC105734211,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,93865,94128,-,MHC_I,ENSANAG00000026873;105734211,NA;LOC105734211,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,94375,94635,-,MHC_I,ENSANAG00000026873;105734211,NA;LOC105734211,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,131849,132139,-,IgC1_MHC_I_alpha3,ENSANAG00000021479;105734214,NA;LOC105734214,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,132720,132981,-,MHC_I,ENSANAG00000021479;105734214,NA;LOC105734214,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,133228,133488,-,MHC_I,ENSANAG00000021479;105734214,NA;LOC105734214,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,171287,171598,-,IgC1_MHC_I_alpha3,105734213,LOC105734213,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,172188,172298,-,MHC_I,105734213,LOC105734213,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,172300,172452,-,MHC_I,105734213,LOC105734213,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,172691,172960,-,MHC_I,105734213,LOC105734213,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,197017,197196,-,MHC_I,KZ205170.1_2:1,KZ205170.1_2:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,203359,203631,-,IgC1_MHC_I_alpha3,105734210,LOC105734210,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,204218,204475,-,MHC_I,105734210,LOC105734210,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,204713,204817,-,MHC_I,105734210,LOC105734210,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,204820,204957,-,MHC_I,105734210,LOC105734210,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,239455,239670,-,MHC_I,105734210,LOC105734210,pseudogene,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,315309,315602,-,IgC1_MHC_I_alpha3,ENSANAG00000037021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,316174,316437,-,MHC_I,ENSANAG00000037021,NA,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,316682,316942,-,MHC_I,ENSANAG00000037021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205170.1,339427,339645,-,MHC_I,KZ205170.1_4:1,KZ205170.1_4:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,346741,346983,-,MHC_I,KZ205170.1_4:2,KZ205170.1_4:2,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,378086,378322,-,MHC_I,KZ205170.1_4:3,KZ205170.1_4:3,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205170.1,408204,408350,-,IgC1_MHC_I_alpha3,KZ205170.1_4:4,KZ205170.1_4:4,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205172.1,25172,25471,-,IgC1_MHC_I_alpha3,KZ205172.1_1:1,KZ205172.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205172.1,25527,25667,-,MHC_I,KZ205172.1_1:1,KZ205172.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205651.1,51746,52035,+,IgC1_MHC_I_alpha3,KZ205651.1_1:1,KZ205651.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ205651.1,119321,119587,+,MHC_I,ENSANAG00000022773,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205651.1,119831,120097,+,MHC_I,ENSANAG00000022773,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205651.1,120680,120958,+,IgC1_MHC_I_alpha3,ENSANAG00000022773,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205651.1,154266,154526,+,MHC_I,105709075,LOC105709075,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205651.1,154770,155042,+,MHC_I,105709075,LOC105709075,mRNA,aa_OG0000000,TRUE
MHCI,mas.night.monkey,KZ205651.1,155462,155710,+,MHC_I,ENSANAG00000034419;110567490,NA;LOC110567490,protein_coding;mRNA,aa_OG0019859,TRUE
MHCI,mas.night.monkey,KZ205651.1,155954,156226,+,MHC_I,ENSANAG00000034419;110567490,NA;LOC110567490,protein_coding;mRNA,aa_OG0019859,TRUE
MHCI,mas.night.monkey,KZ206040.1,6498,6761,-,MHC_I,105734586,LOC105734586,mRNA,aa_OG0022749,TRUE
MHCI,mas.night.monkey,KZ206040.1,47934,48376,-,IgC1_MHC_I_alpha3,KZ206040.1_1:1,KZ206040.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ206040.1,48486,48584,-,MHC_I,KZ206040.1_1:1,KZ206040.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ206352.1,19959,20057,+,IgC1_MHC_I_alpha3,KZ206352.1_1:1,KZ206352.1_1:1,NA,NA,FALSE
MHCI,mas.night.monkey,KZ207785.1,11496,11678,-,MHC_I,KZ207785.1_1:1,KZ207785.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,JZLG01007371.1,455,726,-,MHC_I,105587356,LOC105587356,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,JZLG01007371.1,971,1222,-,MHC_I,105587356,LOC105587356,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011220.1,20747,20983,+,MHC_I,KQ011220.1_1:1,KQ011220.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011220.1,21751,22065,+,IgC1_MHC_I_alpha3,KQ011220.1_1:1,KQ011220.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011220.1,108297,108410,+,MHC_I,KQ011220.1_1:2,KQ011220.1_1:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011220.1,108437,108571,+,MHC_I,KQ011220.1_1:2,KQ011220.1_1:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011220.1,799787,800080,-,IgC1_MHC_I_alpha3,ENSCATG00000043871,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011220.1,800652,800792,-,MHC_I,ENSCATG00000043871,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011220.1,800803,800970,-,MHC_I,ENSCATG00000043871,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011220.1,801762,802019,-,MHC_I,ENSCATG00000043871,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,4016,4090,-,IgC1_MHC_Ia_HLA-B,105600106,LOC105600106,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,5351,5395,-,MHC_I,105600106,LOC105600106,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,5640,5897,-,MHC_I,105600106,LOC105600106,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,143428,143580,-,IgC1_MHC_Ib_HLA-E,KQ011239.1_2:1,KQ011239.1_2:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,207203,207385,+,IgC1_MHC_I_alpha3,105600101,LOC105600101,ncRNA,aa_OG0019920,TRUE
MHCI,sooty.mangabey,KQ011239.1,242430,242704,-,IgC1_MHC_I_alpha3,ENSCATG00000034036;105600100,NA;LOC105600100,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,243294,243577,-,MHC_I,105600100,LOC105600100,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,243823,244095,-,MHC_I,ENSCATG00000034036;105600100,NA;LOC105600100,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,256697,256972,-,IgC1_MHC_Ib_HLA-Cw3-4,KQ011239.1_3:1,KQ011239.1_3:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,257408,257665,-,MHC_I,KQ011239.1_3:1,KQ011239.1_3:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,257906,258140,-,MHC_I,KQ011239.1_3:1,KQ011239.1_3:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,532492,532770,-,IgC1_MHC_I_alpha3,105600085,LOC105600085,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,533373,533663,-,MHC_I,105600085,LOC105600085,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,533888,534127,-,MHC_I,105600085,LOC105600085,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,574502,574903,-,IgC1_MHC_Ia_HLA-B,105600108,LOC105600108,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,575577,575669,-,MHC_I,105600108,LOC105600108,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,588132,588416,-,IgC1_MHC_I_alpha3,ENSCATG00000024616,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,589014,589280,-,MHC_I,ENSCATG00000024616,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,589521,589670,-,MHC_I,ENSCATG00000024616,NA,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,639447,639648,+,IgC1_MHC_I_alpha3,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,642567,642783,-,IgC1_MHC_I_alpha3,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,645046,645328,-,IgC1_MHC_I_alpha3,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,645919,646011,-,MHC_I,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,646031,646090,-,MHC_I,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,646095,646193,-,MHC_I,KQ011239.1_4:3,KQ011239.1_4:3,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,657085,657359,-,IgC1_MHC_I_alpha3,ENSCATG00000040030;105600082,NA;LOC105600082,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,657966,658232,-,MHC_I,ENSCATG00000040030;105600082,NA;LOC105600082,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,658474,658746,-,MHC_I,ENSCATG00000040030;105600082,NA;LOC105600082,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,670196,670450,-,IgC1_MHC_I_alpha3,105600081,LOC105600081,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,670931,671098,-,IgC1_MHC_Ia_HLA-B,105600081,LOC105600081,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,671700,671951,-,MHC_I,105600081,LOC105600081,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,672145,672402,-,MHC_I,105600081,LOC105600081,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,705102,705527,-,IgC1_MHC_Ia_HLA-B,KQ011239.1_5:1,KQ011239.1_5:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,706049,706309,-,MHC_I,KQ011239.1_5:1,KQ011239.1_5:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,765429,765569,-,IgC1_MHC_I_alpha3,KQ011239.1_5:2,KQ011239.1_5:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,765577,765723,-,IgC1_MHC_Ia_HLA-B,KQ011239.1_5:2,KQ011239.1_5:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,766319,766402,-,MHC_I,KQ011239.1_5:2,KQ011239.1_5:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,766405,766569,-,MHC_I,KQ011239.1_5:2,KQ011239.1_5:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,784027,784306,-,IgC1_MHC_I_alpha3,105600079,LOC105600079,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011239.1,792033,792365,-,IgC1_MHC_I_alpha3,KQ011239.1_6:1,KQ011239.1_6:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,793379,793660,-,MHC_I,KQ011239.1_6:1,KQ011239.1_6:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011239.1,822708,823022,-,IgC1_MHC_Ia_HLA-G,105600109,LOC105600109,pseudogene,aa_OG0023094,TRUE
MHCI,sooty.mangabey,KQ011239.1,823557,823730,-,MHC_I,105600109,LOC105600109,pseudogene,aa_OG0023094,TRUE
MHCI,sooty.mangabey,KQ011239.1,842810,843025,-,MHC_I,105600109,LOC105600109,pseudogene,aa_OG0023094,TRUE
MHCI,sooty.mangabey,KQ011239.1,843273,843540,-,MHC_I,ENSCATG00000013650;105600109,NA;LOC105600109,protein_coding;pseudogene,aa_OG0000000;aa_OG0023094,TRUE
MHCI,sooty.mangabey,KQ011393.1,637711,637983,+,MHC_I,ENSCATG00000006997,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011393.1,638221,638487,+,MHC_I,ENSCATG00000006997,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011393.1,639070,639384,+,IgC1_MHC_I_alpha3,ENSCATG00000006997,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011393.1,690198,690443,+,MHC_I,KQ011393.1_1:1,KQ011393.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011393.1,691145,691490,+,IgC1_MHC_I_alpha3,KQ011393.1_1:1,KQ011393.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ011393.1,743027,743230,+,MHC_I,ENSCATG00000033544;105600900,NA;LOC105600900,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011393.1,743746,743853,+,MHC_I,105600900,LOC105600900,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011393.1,744473,744760,+,IgC1_MHC_Ia_HLA-G,105600900,LOC105600900,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ011984.1,424634,424956,-,IgC1_MHC_I_alpha3,KQ011984.1_1:1,KQ011984.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012144.1,65661,65933,+,MHC_I,ENSCATG00000011704;105573805,NA;LOC105573805,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012144.1,66176,66451,+,MHC_I,ENSCATG00000011704;105573805,NA;LOC105573805,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012144.1,67023,67307,+,IgC1_MHC_I_alpha3,ENSCATG00000011704;ENSCATG00000005373;105573805,NA;LOC105573805,protein_coding;miRNA;misc_RNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,sooty.mangabey,KQ012144.1,154657,154929,+,MHC_I,ENSCATG00000030350;105573804,NA;LOC105573804,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012144.1,155172,155438,+,MHC_I,ENSCATG00000030350;105573804,NA;LOC105573804,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012144.1,156019,156297,+,IgC1_MHC_I_alpha3,ENSCATG00000030350;105573804,NA;LOC105573804,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012242.1,55760,56038,-,IgC1_MHC_I_alpha3,ENSCATG00000031274,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012242.1,56585,56851,-,MHC_I,ENSCATG00000031274,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012242.1,57095,57367,-,MHC_I,ENSCATG00000031274,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012242.1,91195,91482,-,IgC1_MHC_I_alpha3,ENSCATG00000032584;ENSCATG00000005358,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,sooty.mangabey,KQ012242.1,92065,92331,-,MHC_I,ENSCATG00000032584,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012242.1,92574,92846,-,MHC_I,ENSCATG00000032584,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012333.1,226004,226225,-,IgC1_MHC_Ib_HLA-E,KQ012333.1_1:1,KQ012333.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012337.1,54205,54492,-,IgC1_MHC_I_alpha3,ENSCATG00000035331;ENSCATG00000005346,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,sooty.mangabey,KQ012337.1,55074,55340,-,MHC_I,ENSCATG00000035331,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012337.1,55583,55855,-,MHC_I,ENSCATG00000035331,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012337.1,128395,128646,-,IgC1_MHC_I_alpha3,105575032,LOC105575032,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012337.1,129223,129489,-,MHC_I,105575032,LOC105575032,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012337.1,129732,130004,-,MHC_I,ENSCATG00000035331;105575032,NA;LOC105575032,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012343.1,68010,68546,-,IgC1_MHC_I_alpha3,ENSCATG00000013945;105575295,NA;LOC105575295,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012343.1,68861,69127,-,MHC_I,ENSCATG00000013945;105575295,NA;LOC105575295,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012343.1,69370,69642,-,MHC_I,ENSCATG00000013945;105575295,NA;LOC105575295,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,17749,17901,+,MHC_I,KQ012357.1_1:1,KQ012357.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012357.1,35439,35711,+,MHC_I,ENSCATG00000009551;105575609,NA;LOC105575609,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,35954,36220,+,MHC_I,ENSCATG00000009551;105575609,NA;LOC105575609,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,36789,37058,+,IgC1_MHC_I_alpha3,ENSCATG00000009551;105575609,NA;LOC105575609,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,57027,57266,+,MHC_I,105575610,LOC105575610,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,57847,58125,+,IgC1_MHC_I_alpha3,105575610,LOC105575610,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012357.1,62940,63206,+,MHC_I,105575610,LOC105575610,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012361.1,23304,23387,-,MHC_I,105575630,LOC105575630,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012361.1,23399,23518,-,MHC_I,105575630,LOC105575630,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012361.1,45094,45372,-,IgC1_MHC_I_alpha3,ENSCATG00000025033;105575630,NA;LOC105575630,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012361.1,46244,46510,-,MHC_I,ENSCATG00000025033;105575630,NA;LOC105575630,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012361.1,46736,46996,-,MHC_I,ENSCATG00000025033;105575630,NA;LOC105575630,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012388.1,17740,17997,+,MHC_I,105576339,LOC105576339,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012388.1,18240,18557,+,MHC_I,105576339,LOC105576339,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012388.1,19134,19235,+,IgC1_MHC_Ia_HLA-B,105576339,LOC105576339,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012388.1,20003,20092,-,IgC1_MHC_Ia_HLA-B,105576339,LOC105576339,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012388.1,43027,43128,+,IgC1_MHC_Ia_HLA-B,KQ012388.1_1:2,KQ012388.1_1:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012404.1,115361,115657,+,MHC_I,105576631,LOC105576631,misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012404.1,115911,116156,+,MHC_I,105576631,LOC105576631,misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012404.1,116758,117036,+,IgC1_MHC_I_alpha3,ENSCATG00000001736;105576631,NA;LOC105576631,protein_coding;misc_RNA,aa_OG0018025;aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012404.1,157462,157734,+,MHC_I,ENSCATG00000008665,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012404.1,157976,158242,+,MHC_I,ENSCATG00000008665,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012404.1,158824,159111,+,IgC1_MHC_I_alpha3,ENSCATG00000008665;ENSCATG00000008746,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,sooty.mangabey,KQ012413.1,21297,21577,-,IgC1_MHC_Ia_HLA-B,KQ012413.1_1:1,KQ012413.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,22195,22443,-,MHC_I,KQ012413.1_1:1,KQ012413.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,30209,30493,-,IgC1_MHC_I_alpha3,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,31096,31362,-,MHC_I,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,31603,31875,-,MHC_I,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,81387,81662,-,IgC1_MHC_Ia_HLA-B,KQ012413.1_2:1,KQ012413.1_2:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,82255,82524,-,MHC_I,KQ012413.1_2:1,KQ012413.1_2:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,94566,94844,-,IgC1_MHC_I_alpha3,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,95447,95713,-,MHC_I,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,95956,96228,-,MHC_I,ENSCATG00000037329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,146881,147109,+,IgC1_MHC_I_alpha3,KQ012413.1_3:2,KQ012413.1_3:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,150009,150291,-,IgC1_MHC_I_alpha3,KQ012413.1_3:2,KQ012413.1_3:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,150884,151135,-,MHC_I,KQ012413.1_3:2,KQ012413.1_3:2,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012413.1,174064,174350,-,IgC1_MHC_I_alpha3,105576707,LOC105576707,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,174948,175214,-,MHC_I,105576707,LOC105576707,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012413.1,175457,175729,-,MHC_I,ENSCATG00000037329;105576707,NA;LOC105576707,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012414.1,47609,47881,+,MHC_I,ENSCATG00000029630,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012414.1,48124,48390,+,MHC_I,ENSCATG00000029630,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012414.1,48971,49258,+,IgC1_MHC_I_alpha3,ENSCATG00000029630;ENSCATG00000015546,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,sooty.mangabey,KQ012421.1,22,288,-,MHC_I,KQ012421.1_1:1,KQ012421.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012426.1,27892,28164,+,MHC_I,ENSCATG00000030075;105576907,NA;LOC105576907,protein_coding;mRNA,aa_OG0035325;aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012426.1,28404,28669,+,MHC_I,ENSCATG00000030075;105576907,NA;LOC105576907,protein_coding;mRNA,aa_OG0035325;aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012426.1,29251,29517,+,IgC1_MHC_Ia_HLA-B,ENSCATG00000030075;105576907,NA;LOC105576907,protein_coding;mRNA,aa_OG0035325;aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012426.1,51634,51795,+,MHC_I,105576907,LOC105576907,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012426.1,52374,52661,+,IgC1_MHC_I_alpha3,ENSCATG00000016273;105576907,NA;LOC105576907,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012427.1,9134,9406,+,MHC_I,105576908,LOC105576908,misc_RNA,rna_OG0035915,TRUE
MHCI,sooty.mangabey,KQ012427.1,11167,11280,+,IgC1_MHC_I_alpha3,105576908,LOC105576908,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012427.1,21879,21965,+,MHC_I,105576908,LOC105576908,misc_RNA,rna_OG0035915,TRUE
MHCI,sooty.mangabey,KQ012427.1,22574,22996,+,IgC1_MHC_Ia_HLA-B,105576908,LOC105576908,misc_RNA,rna_OG0035915,TRUE
MHCI,sooty.mangabey,KQ012454.1,57129,57402,+,MHC_I,ENSCATG00000028439;105578065,NA;LOC105578065,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012454.1,57645,57821,+,MHC_I,ENSCATG00000028439;105578065,NA;LOC105578065,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012454.1,57841,57909,+,MHC_I,ENSCATG00000028439;105578065,NA;LOC105578065,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012454.1,58542,58829,+,IgC1_MHC_I_alpha3,ENSCATG00000028439;105578065,NA;LOC105578065,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012533.1,16760,16876,+,MHC_I,KQ012533.1_1:1,KQ012533.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012533.1,16897,16998,+,MHC_I,KQ012533.1_1:1,KQ012533.1_1:1,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012533.1,38215,38487,+,MHC_I,ENSCATG00000038275;105579405,NA;LOC105579405,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012533.1,38730,38996,+,MHC_I,ENSCATG00000038275;105579405,NA;LOC105579405,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012533.1,39578,39856,+,IgC1_MHC_I_alpha3,ENSCATG00000038275;105579405,NA;LOC105579405,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012533.1,58412,58683,+,MHC_I,ENSCATG00000030601;105579407,NA;LOC105579407,protein_coding;misc_RNA,aa_OG0019859;rna_OG0046156,TRUE
MHCI,sooty.mangabey,KQ012533.1,58925,59191,+,MHC_I,ENSCATG00000030601;105579407,NA;LOC105579407,protein_coding;misc_RNA,aa_OG0019859;rna_OG0046156,TRUE
MHCI,sooty.mangabey,KQ012533.1,59759,59914,+,IgC1_MHC_Ia_HLA-B,105579407,LOC105579407,misc_RNA,rna_OG0046156,TRUE
MHCI,sooty.mangabey,KQ012551.1,20573,20785,+,MHC_I,ENSCATG00000039633;105579752,NA;LOC105579752,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012551.1,21027,21293,+,MHC_I,ENSCATG00000039633;105579752,NA;LOC105579752,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012551.1,21830,22144,+,IgC1_MHC_I_alpha3,ENSCATG00000039633;105579752,NA;LOC105579752,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012585.1,5267,5545,-,IgC1_MHC_I_alpha3,105580838,LOC105580838,misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012585.1,6118,6384,-,MHC_I,ENSCATG00000035834;105580838,NA;LOC105580838,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012585.1,6610,6870,-,MHC_I,ENSCATG00000035834;105580838,NA;LOC105580838,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012611.1,17700,17792,+,MHC_I,105581305,LOC105581305,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012611.1,18655,18942,+,IgC1_MHC_Ia_HLA-G,105581305,LOC105581305,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012718.1,6157,6387,+,MHC_I,105583409,LOC105583409,NA,NA,FALSE
MHCI,sooty.mangabey,KQ012718.1,6967,7296,+,IgC1_MHC_I_alpha3,105583409,LOC105583409,mRNA,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012821.1,2179,2307,-,MHC_I,105584983,LOC105584983,pseudogene,aa_OG0000000,TRUE
MHCI,sooty.mangabey,KQ012821.1,2312,2413,-,MHC_I,105584983,LOC105584983,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973039.1,35381,35677,-,IgC1_MHC_I_alpha3,ENSMLEG00000039700;105540194,NA;LOC105540194,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973039.1,36241,36429,-,MHC_I,ENSMLEG00000039700;105540194,NA;LOC105540194,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973039.1,104628,104870,-,MHC_I,ENSMLEG00000039700;105540194,NA;LOC105540194,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973039.1,146019,146267,-,MHC_I,ENSMLEG00000039700;105540194,NA;LOC105540194,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973117.1,11330,11467,+,MHC_I,105549538,LOC105549538,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,38746,39059,+,MHC_I,105550886,LOC105550886,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,39297,39431,+,MHC_I,105550886,LOC105550886,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,39433,39561,+,MHC_I,105550886,LOC105550886,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,40164,40442,+,IgC1_MHC_I_alpha3,105550886,LOC105550886,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,41384,41662,+,IgC1_MHC_I_alpha3,105550886,LOC105550886,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,135084,135356,+,MHC_I,ENSMLEG00000041129,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,135599,135865,+,MHC_I,ENSMLEG00000041129,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,136406,136690,+,IgC1_MHC_I_alpha3,ENSMLEG00000041129,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,162772,163065,+,MHC_I,ENSMLEG00000024640;105550892,NA;LOC105550892,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,163624,163903,+,IgC1_MHC_I_alpha3,105550892,LOC105550892,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,164146,164412,+,MHC_I,ENSMLEG00000041129;105550892,NA;LOC105550892,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973135.1,164969,165250,+,IgC1_MHC_I_alpha3,ENSMLEG00000024640;105550892,NA;LOC105550892,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973152.1,20432,20494,-,IgC1_MHC_I_alpha3,KN973152.1_1:1,KN973152.1_1:1,NA,NA,FALSE
MHCI,drill,KN973152.1,26671,26763,-,MHC_I,KN973152.1_1:2,KN973152.1_1:2,NA,NA,FALSE
MHCI,drill,KN973152.1,52726,52956,-,MHC_I,105552303,LOC105552303,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973246.1,34814,35101,+,IgC1_MHC_I_alpha3,ENSMLEG00000029063;ENSMLEG00000012167,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,drill,KN973246.1,41307,41492,+,MHC_I,105533259,LOC105533259,mRNA,aa_OG0019859,TRUE
MHCI,drill,KN973246.1,41735,42001,+,MHC_I,105533259,LOC105533259,mRNA,aa_OG0019859,TRUE
MHCI,drill,KN973246.1,110387,110623,+,MHC_I,KN973246.1_1:1,KN973246.1_1:1,NA,NA,FALSE
MHCI,drill,KN973246.1,111391,111670,+,IgC1_MHC_I_alpha3,KN973246.1_1:1,KN973246.1_1:1,NA,NA,FALSE
MHCI,drill,KN973273.1,129255,129505,-,IgC1_MHC_I_alpha3,105533527,LOC105533527,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973273.1,130113,130379,-,MHC_I,ENSMLEG00000032723;105533527,NA;LOC105533527,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973273.1,130622,130894,-,MHC_I,ENSMLEG00000032723;105533527,NA;LOC105533527,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,10399,10665,+,MHC_I,ENSMLEG00000032324;105533653,NA;LOC105533653,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,10913,11104,+,MHC_I,105533653,LOC105533653,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,29415,29675,+,MHC_I,ENSMLEG00000038419;105533651,NA;LOC105533651,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,29899,30165,+,MHC_I,105533651,LOC105533651,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,30746,31059,+,IgC1_MHC_I_alpha3,ENSMLEG00000038419,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,65944,66225,+,MHC_I,KN973288.1_1:1,KN973288.1_1:1,NA,NA,FALSE
MHCI,drill,KN973288.1,67217,67549,+,IgC1_MHC_I_alpha3,KN973288.1_1:2,KN973288.1_1:2,NA,NA,FALSE
MHCI,drill,KN973288.1,75232,75511,+,IgC1_MHC_I_alpha3,105533651,LOC105533651,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,77900,77986,+,IgC1_MHC_I_alpha3,KN973288.1_2:1,KN973288.1_2:1,NA,NA,FALSE
MHCI,drill,KN973288.1,91766,92142,+,MHC_I,105533654,LOC105533654,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,92614,92760,+,IgC1_MHC_Ia_HLA-B,105533654,LOC105533654,NA,NA,FALSE
MHCI,drill,KN973288.1,92768,92908,+,IgC1_MHC_I_alpha3,105533654,LOC105533654,NA,NA,FALSE
MHCI,drill,KN973288.1,146792,146854,+,MHC_I,105533650;105533654,LOC105533650;LOC105533654,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,147457,147735,+,IgC1_MHC_I_alpha3,105533650;105533654,LOC105533650;LOC105533654,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,156768,157028,+,MHC_I,105533650;105533655,LOC105533650;LOC105533655,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,157550,157975,+,IgC1_MHC_Ia_HLA-B,105533650;105533655,LOC105533650;LOC105533655,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,190311,190565,+,MHC_I,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,190759,191012,+,MHC_I,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,191614,191781,+,IgC1_MHC_Ia_HLA-B,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,192263,192517,+,IgC1_MHC_I_alpha3,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,209644,209853,+,MHC_I,105533650;105533649,LOC105533650;LOC105533649,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,210461,210735,+,IgC1_MHC_I_alpha3,105533650;105533649,LOC105533650;LOC105533649,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,224515,224589,+,MHC_I,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973288.1,226003,226285,+,IgC1_MHC_I_alpha3,105533650,LOC105533650,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973318.1,1167880,1167984,+,IgC1_MHC_H-2_TLA,KN973318.1_1:1,KN973318.1_1:1,NA,NA,FALSE
MHCI,drill,KN973381.1,4110,4376,-,IgC1_MHC_I_alpha3,105534484,LOC105534484,misc_RNA,rna_OG0035915,TRUE
MHCI,drill,KN973381.1,36794,36946,+,MHC_I,ENSMLEG00000034050;105534483,NA;LOC105534483,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973381.1,36952,37053,+,MHC_I,ENSMLEG00000034050;105534483,NA;LOC105534483,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973381.1,37277,37543,+,MHC_I,ENSMLEG00000034050;105534483,NA;LOC105534483,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973381.1,43196,43483,+,IgC1_MHC_Ia_HLA-G,ENSMLEG00000034050;105534483,NA;LOC105534483,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973381.1,101909,102331,-,IgC1_MHC_Ia_HLA-B,105534484,LOC105534484,misc_RNA,rna_OG0035915,TRUE
MHCI,drill,KN973381.1,102854,103102,-,MHC_I,105534484,LOC105534484,misc_RNA,rna_OG0035915,TRUE
MHCI,drill,KN973381.1,112478,112756,-,IgC1_MHC_I_alpha3,105534485,LOC105534485,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973381.1,113359,113439,-,MHC_I,105534485,LOC105534485,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973415.1,46389,46634,+,MHC_I,105534696,LOC105534696,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973415.1,47217,47357,+,IgC1_MHC_Ia_HLA-B,105534696,LOC105534696,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973475.1,29904,30068,+,MHC_I,105535299,LOC105535299,mRNA,aa_OG0028312,TRUE
MHCI,drill,KN973475.1,30380,30652,+,MHC_I,ENSMLEG00000028633,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973475.1,30890,31156,+,MHC_I,ENSMLEG00000028633,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973475.1,31739,32023,+,IgC1_MHC_I_alpha3,ENSMLEG00000028633,NA,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN973475.1,78514,78759,+,MHC_I,KN973475.1_1:1,KN973475.1_1:1,NA,NA,FALSE
MHCI,drill,KN973475.1,79463,79808,+,IgC1_MHC_I_alpha3,KN973475.1_1:1,KN973475.1_1:1,NA,NA,FALSE
MHCI,drill,KN973475.1,99494,99919,-,IgC1_MHC_Ia_HLA-B,105535301,LOC105535301,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973475.1,100441,100689,-,MHC_I,105535301,LOC105535301,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973484.1,6265,6432,-,MHC_I,105535329,LOC105535329,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973484.1,14932,15120,-,MHC_I,105535327,LOC105535327,mRNA,aa_OG0019859,TRUE
MHCI,drill,KN973571.1,66407,66697,-,IgC1_MHC_I_alpha3,ENSMLEG00000012116;105535984,NA;LOC105535984,miRNA;misc_RNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,drill,KN973571.1,67272,67538,-,MHC_I,105535984,LOC105535984,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973571.1,67781,67867,-,MHC_I,105535984,LOC105535984,misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973582.1,2492,2737,+,MHC_I,105536048,LOC105536048,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973582.1,3318,3605,+,IgC1_MHC_I_alpha3,ENSMLEG00000012220;105536048,NA;LOC105536048,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,drill,KN973582.1,39243,39296,+,MHC_I,105536048,LOC105536048,NA,NA,FALSE
MHCI,drill,KN973582.1,39878,40165,+,IgC1_MHC_I_alpha3,105536048,LOC105536048,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN973645.1,31232,31474,+,MHC_I,105536453,LOC105536453,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973645.1,32039,32478,+,IgC1_MHC_Ia_HLA-B,105536453,LOC105536453,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973645.1,96574,96846,+,MHC_I,ENSMLEG00000031607;105536450,NA;LOC105536450,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973645.1,97089,97355,+,MHC_I,ENSMLEG00000031607;105536450,NA;LOC105536450,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973645.1,97953,98239,+,IgC1_MHC_I_alpha3,ENSMLEG00000031607;105536450,NA;LOC105536450,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN973681.1,12352,12423,+,MHC_I,KN973681.1_1:1,KN973681.1_1:1,NA,NA,FALSE
MHCI,drill,KN973681.1,54443,54682,+,MHC_I,KN973681.1_1:2,KN973681.1_1:2,NA,NA,FALSE
MHCI,drill,KN973782.1,16222,16512,-,IgC1_MHC_I_alpha3,ENSMLEG00000037451;105537382,NA;LOC105537382,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973782.1,17102,17360,-,MHC_I,ENSMLEG00000037451;105537382,NA;LOC105537382,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973782.1,17612,17713,-,MHC_I,ENSMLEG00000037451;105537382,NA;LOC105537382,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973782.1,17715,17852,-,MHC_I,ENSMLEG00000037451;105537382,NA;LOC105537382,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973782.1,17854,17925,-,MHC_I,ENSMLEG00000037451;105537382,NA;LOC105537382,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN973782.1,18238,18496,-,MHC_I,105537382,LOC105537382,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN974477.1,887,1180,+,IgC1_MHC_I_alpha3,105541160,LOC105541160,mRNA,aa_OG0000000,TRUE
MHCI,drill,KN974618.1,8941,9133,+,IgC1_MHC_I_alpha3,KN974618.1_1:1,KN974618.1_1:1,NA,NA,FALSE
MHCI,drill,KN974618.1,13439,13718,-,IgC1_MHC_I_alpha3,KN974618.1_1:2,KN974618.1_1:2,NA,NA,FALSE
MHCI,drill,KN975766.1,7743,7988,+,MHC_I,KN975766.1_1:1,KN975766.1_1:1,NA,NA,FALSE
MHCI,drill,KN975766.1,8687,9032,+,IgC1_MHC_I_alpha3,KN975766.1_1:1,KN975766.1_1:1,NA,NA,FALSE
MHCI,drill,KN978064.1,44569,44826,+,MHC_I,ENSMLEG00000005547,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN978064.1,45070,45387,+,MHC_I,ENSMLEG00000005547,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN978064.1,45960,46253,+,IgC1_MHC_I_alpha3,ENSMLEG00000005547,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,125350,125562,-,IgC1_MHC_Ib_HLA-E,KN978855.1_1:1,KN978855.1_1:1,NA,NA,FALSE
MHCI,drill,KN978855.1,196187,196369,+,IgC1_MHC_I_alpha3,KN978855.1_1:2,KN978855.1_1:2,NA,NA,FALSE
MHCI,drill,KN978855.1,232964,233239,-,IgC1_MHC_I_alpha3,105554863,LOC105554863,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,233838,234109,-,MHC_I,105554863,LOC105554863,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,234354,234605,-,MHC_I,105554863,LOC105554863,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,246494,246769,-,IgC1_MHC_Ib_HLA-Cw3-4,105554865,LOC105554865,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,247205,247453,-,MHC_I,105554865,LOC105554865,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,247701,247832,-,MHC_I,105554865,LOC105554865,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,247834,247950,-,MHC_I,105554865,LOC105554865,pseudogene,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,593370,593651,-,IgC1_MHC_I_alpha3,ENSMLEG00000041868;105554854,NA;LOC105554854,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,594249,594507,-,MHC_I,ENSMLEG00000041868;105554854,NA;LOC105554854,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,594754,594988,-,MHC_I,ENSMLEG00000041868;105554854,NA;LOC105554854,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,594990,595058,-,MHC_I,ENSMLEG00000041868;105554854,NA;LOC105554854,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,630231,630524,-,IgC1_MHC_Ia_HLA-B,KN978855.1_2:1,KN978855.1_2:1,NA,NA,FALSE
MHCI,drill,KN978855.1,631124,631204,-,MHC_I,KN978855.1_2:1,KN978855.1_2:1,NA,NA,FALSE
MHCI,drill,KN978855.1,631230,631373,-,MHC_I,KN978855.1_2:1,KN978855.1_2:1,NA,NA,FALSE
MHCI,drill,KN978855.1,638586,638864,-,IgC1_MHC_I_alpha3,ENSMLEG00000041868;105554853,NA;LOC105554853,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,639457,639645,-,MHC_I,ENSMLEG00000041868;105554853,NA;LOC105554853,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,drill,KN978855.1,713757,713949,+,IgC1_MHC_I_alpha3,KN978855.1_3:1,KN978855.1_3:1,NA,NA,FALSE
MHCI,drill,KN978855.1,716898,717213,-,IgC1_MHC_I_alpha3,KN978855.1_3:2,KN978855.1_3:2,NA,NA,FALSE
MHCI,drill,KN978855.1,717769,718020,-,MHC_I,KN978855.1_3:2,KN978855.1_3:2,NA,NA,FALSE
MHCI,drill,KN979237.1,236998,237219,-,IgC1_MHC_Ib_HLA-E,KN979237.1_1:1,KN979237.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,4,26086220,26086591,+,IgC1_MHC_I_alpha3,4_1:1,4_1:1,NA,NA,FALSE
MHCI,olive.baboon,4,29439250,29439522,+,MHC_I,ENSPANG00000007708,PACA-F,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29439760,29440026,+,MHC_I,ENSPANG00000007708,PACA-F,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29440609,29440893,+,IgC1_MHC_I_alpha3,ENSPANG00000007708,PACA-F,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29475804,29476049,+,MHC_I,4_2:1,4_2:1,NA,NA,FALSE
MHCI,olive.baboon,4,29476755,29477100,+,IgC1_MHC_I_alpha3,4_2:1,4_2:1,NA,NA,FALSE
MHCI,olive.baboon,4,29482281,29482553,+,MHC_I,ENSPANG00000007406,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29482789,29483055,+,MHC_I,ENSPANG00000007406,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29483648,29483926,+,IgC1_MHC_I_alpha3,ENSPANG00000007406,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29489490,29489642,+,MHC_I,4_3:1,4_3:1,NA,NA,FALSE
MHCI,olive.baboon,4,29489660,29489740,+,MHC_I,4_3:1,4_3:1,NA,NA,FALSE
MHCI,olive.baboon,4,29490340,29490405,+,IgC1_MHC_Ia_HLA-B,4_3:1,4_3:1,NA,NA,FALSE
MHCI,olive.baboon,4,29490408,29490632,+,IgC1_MHC_I_alpha3,4_3:1,4_3:1,NA,NA,FALSE
MHCI,olive.baboon,4,29529495,29529806,+,MHC_I,ENSPANG00000004307;101015560,NA;LOC101015560,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29530033,29530323,+,MHC_I,ENSPANG00000004307;101015560,NA;LOC101015560,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29530891,29531205,+,IgC1_MHC_I_alpha3,ENSPANG00000004307;101015560,NA;LOC101015560,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29805664,29805898,+,MHC_I,4_4:1,4_4:1,NA,NA,FALSE
MHCI,olive.baboon,4,29806139,29806396,+,MHC_I,4_4:1,4_4:1,NA,NA,FALSE
MHCI,olive.baboon,4,29806940,29807116,+,IgC1_MHC_Ib_HLA-Cw3-4,4_4:1,4_4:1,NA,NA,FALSE
MHCI,olive.baboon,4,29819630,29819902,+,MHC_I,101022999,LOC101022999,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29820148,29820431,+,MHC_I,101022999,LOC101022999,NA,NA,FALSE
MHCI,olive.baboon,4,29821021,29821296,+,IgC1_MHC_I_alpha3,101022999,LOC101022999,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,29857358,29857543,-,IgC1_MHC_I_alpha3,103883590,LOC103883590,ncRNA,aa_OG0019920,TRUE
MHCI,olive.baboon,4,29919042,29919194,+,IgC1_MHC_Ib_HLA-E,4_6:1,4_6:1,NA,NA,FALSE
MHCI,olive.baboon,4,30041697,30041954,+,MHC_I,ENSPANG00000001215,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,30042197,30042514,+,MHC_I,ENSPANG00000001215,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,30043087,30043380,+,IgC1_MHC_I_alpha3,ENSPANG00000001215,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,4,30721355,30721489,-,MHC_I,4_7:1,4_7:1,NA,NA,FALSE
MHCI,olive.baboon,4,30721516,30721629,-,MHC_I,4_7:1,4_7:1,NA,NA,FALSE
MHCI,olive.baboon,4,30802129,30802407,-,IgC1_MHC_I_alpha3,ENSPANG00000031285;101009503,NA;LOC101009503,protein_coding;mRNA,aa_OG0018025;aa_OG0000000,TRUE
MHCI,olive.baboon,4,30803009,30803272,-,MHC_I,101009503,LOC101009503,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,30803510,30803806,-,MHC_I,101009503,LOC101009503,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,4,30940795,30941117,+,IgC1_MHC_I_alpha3,4_8:1,4_8:1,NA,NA,FALSE
MHCI,olive.baboon,4,32241346,32241567,+,IgC1_MHC_Ib_HLA-E,4_8:2,4_8:2,NA,NA,FALSE
MHCI,olive.baboon,4,113000952,113001125,-,MHC_I,4_8:3,4_8:3,NA,NA,FALSE
MHCI,olive.baboon,AHZZ02099701.1,2241,2489,+,MHC_I,AHZZ02099701.1_1:1,AHZZ02099701.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,AHZZ02099701.1,3014,3436,+,IgC1_MHC_Ia_HLA-B,AHZZ02099701.1_1:1,AHZZ02099701.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,AHZZ02110117.1,4837,4989,+,MHC_I,101002609,LOC101002609,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,AHZZ02110117.1,4998,5093,+,MHC_I,101002609,LOC101002609,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,AHZZ02110117.1,5340,5606,+,MHC_I,101002609,LOC101002609,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,AHZZ02110117.1,6218,6508,+,IgC1_MHC_Ia_HLA-G,101002609,LOC101002609,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ093122.1,286,558,-,MHC_I,KZ093122.1_1:1,KZ093122.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ094055.1,8817,9095,-,IgC1_MHC_I_alpha3,ENSPANG00000034280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ094055.1,9698,9964,-,MHC_I,ENSPANG00000034280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ094055.1,10205,10477,-,MHC_I,ENSPANG00000034280,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,8257,8529,+,MHC_I,ENSPANG00000032171;101026217,NA;LOC101026217,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,8773,9039,+,MHC_I,ENSPANG00000032171;101026217,NA;LOC101026217,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,9586,9870,+,IgC1_MHC_I_alpha3,ENSPANG00000032171;101026217,NA;LOC101026217,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,51264,51524,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,51749,52015,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,52588,52866,+,IgC1_MHC_I_alpha3,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,78352,78534,+,MHC_I,KZ097448.1_1:1,KZ097448.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097448.1,78555,78656,+,MHC_I,KZ097448.1_1:1,KZ097448.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097448.1,96361,96633,+,MHC_I,ENSPANG00000034531;100997583,NA;LOC100997583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,96876,97142,+,MHC_I,ENSPANG00000034531;100997583,NA;LOC100997583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,97723,98010,+,IgC1_MHC_I_alpha3,ENSPANG00000034531;ENSPANG00000032570;100997583,NA;LOC100997583,protein_coding;miRNA;misc_RNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,olive.baboon,KZ097448.1,115321,115593,+,MHC_I,ENSPANG00000030071;101021987,NA;LOC101021987,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,115830,116096,+,MHC_I,ENSPANG00000030071;101021987,NA;LOC101021987,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,116678,116956,+,IgC1_MHC_I_alpha3,ENSPANG00000030071;101021987,NA;LOC101021987,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,136065,136337,+,MHC_I,ENSPANG00000036111,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,136579,136845,+,MHC_I,ENSPANG00000036111,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,137416,137709,+,IgC1_MHC_I_alpha3,ENSPANG00000036111;ENSPANG00000030895,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,olive.baboon,KZ097448.1,189004,189318,+,MHC_I,KZ097448.1_2:1,KZ097448.1_2:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097448.1,189566,189832,+,MHC_I,KZ097448.1_2:1,KZ097448.1_2:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097448.1,253539,253811,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,254054,254320,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,254895,255188,+,IgC1_MHC_I_alpha3,ENSPANG00000030071;ENSPANG00000035967,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,olive.baboon,KZ097448.1,306302,306574,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,306817,307083,+,MHC_I,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097448.1,307654,307947,+,IgC1_MHC_I_alpha3,ENSPANG00000030071,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,2935,3153,+,IgC1_MHC_I_alpha3,KZ097471.1_1:1,KZ097471.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,11679,11957,-,IgC1_MHC_I_alpha3,ENSPANG00000034965;101007570,NA;LOC101007570,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,12562,12828,-,MHC_I,ENSPANG00000034965;101007570,NA;LOC101007570,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,13073,13345,-,MHC_I,ENSPANG00000034965;101007570,NA;LOC101007570,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,42690,42950,+,MHC_I,ENSPANG00000031191,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,43178,43444,+,MHC_I,ENSPANG00000031191,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,44041,44346,+,IgC1_MHC_Ia_HLA-G,ENSPANG00000031191,NA,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,73059,73340,+,MHC_I,KZ097471.1_2:2,KZ097471.1_2:2,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,74350,74682,+,IgC1_MHC_I_alpha3,KZ097471.1_2:2,KZ097471.1_2:2,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,81841,81912,+,MHC_I,KZ097471.1_2:3,KZ097471.1_2:3,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,82054,82333,+,IgC1_MHC_I_alpha3,KZ097471.1_2:3,KZ097471.1_2:3,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,98156,98311,+,MHC_I,KZ097471.1_2:4,KZ097471.1_2:4,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,98323,98406,+,MHC_I,KZ097471.1_2:4,KZ097471.1_2:4,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,99003,99294,+,IgC1_MHC_Ia_HLA-B,KZ097471.1_2:4,KZ097471.1_2:4,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,147057,147329,+,MHC_I,ENSPANG00000032510,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,147568,147834,+,MHC_I,ENSPANG00000032510,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,148706,148984,+,IgC1_MHC_I_alpha3,ENSPANG00000032510,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,160498,160752,+,MHC_I,KZ097471.1_3:1,KZ097471.1_3:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,161355,161612,+,IgC1_MHC_Ia_HLA-B,KZ097471.1_3:1,KZ097471.1_3:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,213265,213537,+,MHC_I,101008284,LOC101008284,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097471.1,213780,214046,+,MHC_I,101008284,LOC101008284,NA,NA,FALSE
MHCI,olive.baboon,KZ097471.1,214644,214930,+,IgC1_MHC_I_alpha3,101008284,LOC101008284,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097548.1,15017,15295,-,IgC1_MHC_I_alpha3,ENSPANG00000036005,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097548.1,15876,16142,-,MHC_I,ENSPANG00000036005,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097548.1,16385,16645,-,MHC_I,ENSPANG00000036005,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097548.1,37298,37543,-,MHC_I,KZ097548.1_1:1,KZ097548.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097548.1,37791,38057,-,MHC_I,KZ097548.1_1:1,KZ097548.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ097660.1,4253,4519,-,MHC_I,ENSPANG00000035471;101005045,NA;LOC101005045,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097660.1,4760,5032,-,MHC_I,ENSPANG00000035471;101005045,NA;LOC101005045,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097734.1,10313,10591,-,IgC1_MHC_I_alpha3,ENSPANG00000035427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097734.1,11162,11428,-,MHC_I,ENSPANG00000035427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097734.1,11671,11943,-,MHC_I,ENSPANG00000035427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097951.1,5219,5491,+,MHC_I,ENSPANG00000032309;101004929,NA;LOC101004929,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097951.1,5732,5998,+,MHC_I,ENSPANG00000032309;101004929,NA;LOC101004929,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ097951.1,6562,6867,+,IgC1_MHC_I_alpha3,ENSPANG00000032309;ENSPANG00000032550;101004929,NA;LOC101004929,protein_coding;miRNA;mRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,olive.baboon,KZ098505.1,10886,11158,+,MHC_I,ENSPANG00000029409,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098505.1,11401,11668,+,MHC_I,ENSPANG00000029409,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098505.1,12249,12542,+,IgC1_MHC_I_alpha3,ENSPANG00000029409,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098505.1,14288,14491,+,MHC_I,108584316,LOC108584316,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098505.1,14733,14999,+,MHC_I,108584316,LOC108584316,mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098774.1,21193,21471,-,IgC1_MHC_I_alpha3,ENSPANG00000035284;101003522,NA;LOC101003522,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098774.1,22052,22318,-,MHC_I,ENSPANG00000035284;101003522,NA;LOC101003522,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098774.1,22561,22833,-,MHC_I,ENSPANG00000035284;101003522,NA;LOC101003522,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ098775.1,8686,8919,+,IgC1_MHC_I_alpha3,KZ098775.1_1:1,KZ098775.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ099042.1,5705,5977,+,MHC_I,ENSPANG00000033063;101012036,NA;LOC101012036,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099042.1,6209,6475,+,MHC_I,ENSPANG00000033063,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099042.1,7075,7377,+,IgC1_MHC_Ia_HLA-G,ENSPANG00000033063,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,1162,1428,-,MHC_I,101013109,LOC101013109,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,1652,1912,-,MHC_I,101013109,LOC101013109,pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,26515,26730,-,MHC_I,ENSPANG00000033122;110742437,NA;LOC110742437,NA,NA,FALSE
MHCI,olive.baboon,KZ099055.1,26978,27244,-,MHC_I,ENSPANG00000033122;110742437,NA;LOC110742437,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,57687,57959,+,MHC_I,ENSPANG00000033994,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,58200,58466,+,MHC_I,ENSPANG00000033994,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,59069,59353,+,IgC1_MHC_I_alpha3,ENSPANG00000033994,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099055.1,68168,68416,+,MHC_I,KZ099055.1_2:1,KZ099055.1_2:1,NA,NA,FALSE
MHCI,olive.baboon,KZ099055.1,68938,69311,+,IgC1_MHC_Ia_HLA-B,KZ099055.1_2:1,KZ099055.1_2:1,NA,NA,FALSE
MHCI,olive.baboon,KZ099057.1,13850,14137,-,IgC1_MHC_I_alpha3,ENSPANG00000023606;ENSPANG00000035772,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,olive.baboon,KZ099057.1,14719,14985,-,MHC_I,ENSPANG00000023606,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099057.1,15228,15500,-,MHC_I,ENSPANG00000023606,NA,protein_coding,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099219.1,1352,1624,-,MHC_I,ENSPANG00000033980;101020363,NA;LOC101020363,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,olive.baboon,KZ099585.1,13528,13901,-,IgC1_MHC_Ia_HLA-B,KZ099585.1_1:1,KZ099585.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ099585.1,14424,14672,-,MHC_I,KZ099585.1_1:1,KZ099585.1_1:1,NA,NA,FALSE
MHCI,olive.baboon,KZ099631.1,362,610,+,IgC1_MHC_I_alpha3,KZ099631.1_1:1,KZ099631.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,56130381,56130632,+,MHC_I,4_1:1,4_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,137932853,137933074,-,IgC1_MHC_Ib_HLA-E,4_1:2,4_1:2,NA,NA,FALSE
MHCI,crab.eating.macaque,4,139369108,139369430,-,IgC1_MHC_I_alpha3,4_1:3,4_1:3,NA,NA,FALSE
MHCI,crab.eating.macaque,4,139500617,139500806,+,MHC_I,102138996,LOC102138996,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139501178,139501351,+,MHC_I,102138996,LOC102138996,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139501947,139502225,+,IgC1_MHC_I_alpha3,102138996,LOC102138996,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139527077,139527196,+,MHC_I,4_2:1,4_2:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,139527217,139527318,+,MHC_I,4_2:1,4_2:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,139548078,139548320,+,MHC_I,ENSMFAG00000037649,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139548724,139548936,+,MHC_I,ENSMFAG00000037649;102142617,NA;LOC102142617,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139549517,139549795,+,IgC1_MHC_I_alpha3,ENSMFAG00000037649;102142617,NA;LOC102142617,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139566775,139567047,+,MHC_I,ENSMFAG00000045172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139567290,139567556,+,MHC_I,ENSMFAG00000045172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139568139,139568417,+,IgC1_MHC_I_alpha3,ENSMFAG00000045172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139667925,139668187,+,MHC_I,107129573,LOC107129573,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139668436,139668681,+,MHC_I,102144295,LOC102144295,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,139669284,139669562,+,IgC1_MHC_I_alpha3,ENSMFAG00000039796;102144295,NA;LOC102144295,protein_coding;pseudogene,aa_OG0018025;aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140471322,140471615,-,IgC1_MHC_I_alpha3,ENSMFAG00000035330,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140472192,140472509,-,MHC_I,ENSMFAG00000035330,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140472752,140473009,-,MHC_I,ENSMFAG00000035330,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140591087,140591299,-,IgC1_MHC_Ib_HLA-E,4_3:1,4_3:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,140653495,140653671,+,IgC1_MHC_I_alpha3,4_3:2,4_3:2,NA,NA,FALSE
MHCI,crab.eating.macaque,4,140689746,140690021,-,IgC1_MHC_I_alpha3,ENSMFAG00000046125;102142486,NA;LOC102142486,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140690623,140690679,-,MHC_I,ENSMFAG00000046125;102142486,NA;LOC102142486,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140690688,140690894,-,MHC_I,ENSMFAG00000046125;102142486,NA;LOC102142486,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140691146,140691409,-,MHC_I,ENSMFAG00000046125;102142486,NA;LOC102142486,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,140702979,140703155,-,IgC1_MHC_Ib_HLA-Cw3-4,102145054,LOC102145054,mRNA,aa_OG0038001,TRUE
MHCI,crab.eating.macaque,4,140703700,140703957,-,MHC_I,102145054,LOC102145054,mRNA,aa_OG0038001,TRUE
MHCI,crab.eating.macaque,4,140704200,140704538,-,MHC_I,102145054,LOC102145054,mRNA;misc_RNA,aa_OG0038001,TRUE
MHCI,crab.eating.macaque,4,141044328,141044600,+,MHC_I,ENSMFAG00000000984,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,141045003,141045269,+,MHC_I,ENSMFAG00000000984,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,141045872,141046150,+,IgC1_MHC_I_alpha3,ENSMFAG00000000984,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,141058392,141058653,+,MHC_I,4_4:1,4_4:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,141059249,141059539,+,IgC1_MHC_Ia_HLA-B,4_4:1,4_4:1,NA,NA,FALSE
MHCI,crab.eating.macaque,4,141072454,141072792,-,IgC1_MHC_I_alpha3,4_4:2,4_4:2,NA,NA,FALSE
MHCI,crab.eating.macaque,4,141073496,141073741,-,MHC_I,4_4:2,4_4:2,NA,NA,FALSE
MHCI,crab.eating.macaque,4,141113386,141113670,-,IgC1_MHC_I_alpha3,ENSMFAG00000040925,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,141114253,141114519,-,MHC_I,ENSMFAG00000040925,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,141114757,141115029,-,MHC_I,ENSMFAG00000040925,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,4,144499922,144500293,-,IgC1_MHC_I_alpha3,4_5:1,4_5:1,NA,NA,FALSE
MHCI,crab.eating.macaque,AQIA01053157.1,1025,1303,+,IgC1_MHC_I_alpha3,ENSMFAG00000032513,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,AQIA01077575.1,3,68,+,IgC1_MHC_I_alpha3,AQIA01077575.1_1:1,AQIA01077575.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,AQIA01082246.1,6696,7028,-,IgC1_MHC_I_alpha3,ENSMFAG00000045054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,AQIA01082246.1,7526,7792,-,MHC_I,ENSMFAG00000045054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,AQIA01082246.1,8034,8306,-,MHC_I,ENSMFAG00000045054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145577.1,23904,23975,+,MHC_I,KE145577.1_1:1,KE145577.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,24117,24396,+,IgC1_MHC_I_alpha3,KE145577.1_1:1,KE145577.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,43058,43210,+,MHC_I,KE145577.1_1:2,KE145577.1_1:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,43897,44188,+,IgC1_MHC_Ia_HLA-B,KE145577.1_1:2,KE145577.1_1:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,104949,105221,+,MHC_I,ENSMFAG00000000580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145577.1,105461,105727,+,MHC_I,ENSMFAG00000000580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145577.1,106329,106607,+,IgC1_MHC_I_alpha3,ENSMFAG00000000580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145577.1,118537,118806,+,MHC_I,KE145577.1_2:1,KE145577.1_2:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,119405,119680,+,IgC1_MHC_Ia_HLA-B,KE145577.1_2:1,KE145577.1_2:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,182898,183149,+,MHC_I,KE145577.1_2:2,KE145577.1_2:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,183741,184023,+,IgC1_MHC_I_alpha3,KE145577.1_2:2,KE145577.1_2:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,186907,187108,-,IgC1_MHC_I_alpha3,KE145577.1_2:3,KE145577.1_2:3,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145577.1,199077,199278,-,IgC1_MHC_I_alpha3,KE145577.1_2:4,KE145577.1_2:4,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145584.1,22760,23185,-,IgC1_MHC_Ia_HLA-B,ENSMFAG00000040054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145584.1,23704,23952,-,MHC_I,ENSMFAG00000040054,NA,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145584.1,33275,33553,-,IgC1_MHC_I_alpha3,ENSMFAG00000040054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145584.1,34156,34422,-,MHC_I,ENSMFAG00000040054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145584.1,34662,34934,-,MHC_I,ENSMFAG00000040054,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145585.1,29012,29173,+,MHC_I,102132289,LOC102132289,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145585.1,29560,29826,+,MHC_I,102132289,LOC102132289,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145585.1,30407,30685,+,IgC1_MHC_I_alpha3,102132289,LOC102132289,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145589.1,24417,24677,+,MHC_I,ENSMFAG00000013071;102136749,NA;LOC102136749,protein_coding;pseudogene,aa_OG0000000;aa_OG0023094,TRUE
MHCI,crab.eating.macaque,KE145589.1,24901,25167,+,MHC_I,ENSMFAG00000013071;102136749,NA;LOC102136749,protein_coding;pseudogene,aa_OG0000000;aa_OG0023094,TRUE
MHCI,crab.eating.macaque,KE145589.1,25779,26066,+,IgC1_MHC_Ia_HLA-G,ENSMFAG00000013071;102136749,NA;LOC102136749,protein_coding;pseudogene,aa_OG0000000;aa_OG0023094,TRUE
MHCI,crab.eating.macaque,KE145590.1,42409,42669,+,MHC_I,102137874,LOC102137874,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145590.1,42920,43099,+,MHC_I,102137874,LOC102137874,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145591.1,18595,18867,+,MHC_I,ENSMFAG00000031967;102138883,NA;Mafa-B,protein_coding;mRNA,aa_OG0000000;aa_OG0032263,TRUE
MHCI,crab.eating.macaque,KE145591.1,19105,19371,+,MHC_I,102138883,Mafa-B,mRNA,aa_OG0032263,TRUE
MHCI,crab.eating.macaque,KE145592.1,8715,8957,+,MHC_I,KE145592.1_1:1,KE145592.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145592.1,9559,9834,+,IgC1_MHC_Ia_HLA-B,KE145592.1_1:1,KE145592.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145592.1,53653,53811,+,MHC_I,KE145592.1_1:2,KE145592.1_1:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145593.1,22944,23216,+,MHC_I,ENSMFAG00000001369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145593.1,23459,23725,+,MHC_I,ENSMFAG00000001369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145593.1,24305,24583,+,IgC1_MHC_I_alpha3,ENSMFAG00000001369,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145593.1,43259,43504,+,MHC_I,102140389,LOC102140389,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145597.1,4956,5222,-,MHC_I,102141449,LOC102141449,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145597.1,5470,5508,-,MHC_I,102141449,LOC102141449,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145597.1,5519,5629,-,MHC_I,102141449,LOC102141449,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145599.1,9319,9438,+,MHC_I,KE145599.1_1:1,KE145599.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145599.1,12425,12697,+,MHC_I,ENSMFAG00000037375,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145599.1,12940,13206,+,MHC_I,ENSMFAG00000037375,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145599.1,13787,14074,+,IgC1_MHC_I_alpha3,ENSMFAG00000037375;ENSMFAG00000014626,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,crab.eating.macaque,KE145600.1,3338,3400,+,MHC_I,KE145600.1_1:1,KE145600.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145600.1,4781,5068,+,IgC1_MHC_I_alpha3,ENSMFAG00000014463;102143405,NA;LOC102143405,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145600.1,22418,22690,+,MHC_I,ENSMFAG00000003690,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145600.1,22933,23199,+,MHC_I,ENSMFAG00000003690,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145600.1,23780,24067,+,IgC1_MHC_I_alpha3,ENSMFAG00000003690;ENSMFAG00000014486,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,crab.eating.macaque,KE145603.1,13356,13547,-,MHC_I,ENSMFAG00000047143;102145669,NA;LOC102145669,lincRNA;mRNA,aa_OG0038019;aa_OG0032056,TRUE
MHCI,crab.eating.macaque,KE145603.1,13794,14066,-,MHC_I,ENSMFAG00000047143;102145669,NA;LOC102145669,lincRNA;mRNA,aa_OG0038019;aa_OG0032056,TRUE
MHCI,crab.eating.macaque,KE145606.1,2082,2225,-,IgC1_MHC_I_alpha3,KE145606.1_1:1,KE145606.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145606.1,15049,15408,-,IgC1_MHC_I_alpha3,102146055,LOC102146055,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145606.1,15972,16220,-,MHC_I,102146055,LOC102146055,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145606.1,16469,16773,-,MHC_I,102146055,LOC102146055,misc_RNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145608.1,17840,18085,+,IgC1_MHC_Ib_HLA-Cw3-4,KE145608.1_1:1,KE145608.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145609.1,8232,8468,+,MHC_I,KE145609.1_1:1,KE145609.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145609.1,9236,9515,+,IgC1_MHC_I_alpha3,KE145609.1_1:1,KE145609.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE145612.1,10580,10849,+,MHC_I,102146424,LOC102146424,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE145612.1,11097,11288,+,MHC_I,107126529,LOC107126529,mRNA,aa_OG0038019,TRUE
MHCI,crab.eating.macaque,KE145621.1,2279,2615,+,IgC1_MHC_I_alpha3,KE145621.1_1:1,KE145621.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE146209.1,12201,12488,-,IgC1_MHC_I_alpha3,ENSMFAG00000044769;ENSMFAG00000014560,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,crab.eating.macaque,KE146209.1,13070,13336,-,MHC_I,ENSMFAG00000044769,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146209.1,13579,13851,-,MHC_I,ENSMFAG00000044769,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146299.1,4778,5044,+,MHC_I,102145933,LOC102145933,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146299.1,5627,5914,+,IgC1_MHC_I_alpha3,ENSMFAG00000014671;102145933,NA;LOC102145933,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146305.1,8888,9160,+,MHC_I,ENSMFAG00000035601,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146305.1,10385,10669,+,IgC1_MHC_I_alpha3,ENSMFAG00000035601;ENSMFAG00000014698;102116897,NA;LOC102116897,protein_coding;miRNA;mRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,crab.eating.macaque,KE146372.1,1901,2145,-,IgC1_MHC_I_alpha3,KE146372.1_1:1,KE146372.1_1:1,NA,NA,FALSE
MHCI,crab.eating.macaque,KE146372.1,3484,3738,-,MHC_I,KE146372.1_1:2,KE146372.1_1:2,NA,NA,FALSE
MHCI,crab.eating.macaque,KE146438.1,1236,1508,-,MHC_I,ENSMFAG00000042094;102116151,NA;LOC102116151,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146441.1,4088,4366,-,IgC1_MHC_I_alpha3,ENSMFAG00000041963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146441.1,4962,5255,-,MHC_I,ENSMFAG00000041963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146441.1,5500,5795,-,MHC_I,ENSMFAG00000041963,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146472.1,3961,4239,+,IgC1_MHC_I_alpha3,102121775,LOC102121775,mRNA,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146535.1,4394,4666,+,MHC_I,ENSMFAG00000038879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146535.1,4907,5173,+,MHC_I,ENSMFAG00000038879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146535.1,6095,6373,+,IgC1_MHC_I_alpha3,ENSMFAG00000038879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE146553.1,3463,3705,-,MHC_I,102135691,LOC102135691,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE147182.1,2241,2531,-,IgC1_MHC_I_alpha3,102131664,LOC102131664,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE147182.1,3122,3380,-,MHC_I,102131664,LOC102131664,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE147182.1,3627,3728,-,MHC_I,102131664,LOC102131664,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE147182.1,3730,3858,-,MHC_I,102131664,LOC102131664,pseudogene,aa_OG0000000,TRUE
MHCI,crab.eating.macaque,KE147182.1,3860,3931,-,MHC_I,102131664,LOC102131664,pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,55949991,55950125,+,MHC_I,4_1:1,4_1:1,NA,NA,FALSE
MHCI,macaque,4,55995665,55995853,-,MHC_I,4_1:2,4_1:2,NA,NA,FALSE
MHCI,macaque,4,56123380,56123631,+,MHC_I,4_1:3,4_1:3,NA,NA,FALSE
MHCI,macaque,4,136627576,136627797,-,IgC1_MHC_Ib_HLA-E,4_1:4,4_1:4,NA,NA,FALSE
MHCI,macaque,4,137999320,137999642,-,IgC1_MHC_I_alpha3,4_1:5,4_1:5,NA,NA,FALSE
MHCI,macaque,4,138134340,138134513,+,MHC_I,ENSMMUG00000063607;714466,NA;LOC714466,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138134516,138134635,+,MHC_I,ENSMMUG00000063607;714466,NA;LOC714466,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138134876,138135136,+,MHC_I,ENSMMUG00000063607;714466,NA;LOC714466,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138135739,138136017,+,IgC1_MHC_I_alpha3,ENSMMUG00000063607;714466,NA;LOC714466,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138274296,138274556,+,MHC_I,114677642,LOC114677642,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138274603,138275046,+,MHC_I,114677642,LOC114677642,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138275619,138275897,+,IgC1_MHC_I_alpha3,114677642,LOC114677642,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,138300794,138301030,+,MHC_I,114677645,LOC114677645,ncRNA,rna_OG0028569,TRUE
MHCI,macaque,4,138330113,138330385,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138330628,138330894,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138331476,138331766,+,IgC1_MHC_I_alpha3,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138481088,138481402,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138481645,138481911,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138482492,138482770,+,IgC1_MHC_I_alpha3,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138560463,138560735,+,MHC_I,714964,LOC714964,mRNA,aa_OG0000000,TRUE
MHCI,macaque,4,138560978,138561244,+,MHC_I,714964,LOC714964,mRNA,aa_OG0000000,TRUE
MHCI,macaque,4,138561824,138562100,+,IgC1_MHC_Ia_HLA-B,714964,LOC714964,mRNA,aa_OG0000000,TRUE
MHCI,macaque,4,138645800,138646072,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138646314,138646580,+,MHC_I,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138647158,138647445,+,IgC1_MHC_I_alpha3,ENSMMUG00000054038,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,138689846,138689998,+,MHC_I,4_2:1,4_2:1,NA,NA,FALSE
MHCI,macaque,4,138690801,138691081,+,IgC1_MHC_I_alpha3,4_2:2,4_2:2,NA,NA,FALSE
MHCI,macaque,4,138729897,138730133,-,IgC1_MHC_I_alpha3,4_2:3,4_2:3,NA,NA,FALSE
MHCI,macaque,4,139407526,139407819,-,IgC1_MHC_I_alpha3,ENSMMUG00000055242,MAMU-E,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139408392,139408709,-,MHC_I,ENSMMUG00000055242,MAMU-E,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139408952,139409290,-,MHC_I,ENSMMUG00000055242,MAMU-E,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139527068,139527280,-,IgC1_MHC_Ib_HLA-E,4_3:1,4_3:1,NA,NA,FALSE
MHCI,macaque,4,139588280,139588456,+,IgC1_MHC_I_alpha3,4_3:2,4_3:2,NA,NA,FALSE
MHCI,macaque,4,139623867,139624142,-,IgC1_MHC_I_alpha3,ENSMMUG00000053776;ENSMMUG00000060527;710452,NA;LOC710452,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,139624744,139625012,-,MHC_I,ENSMMUG00000060527;710452,NA;LOC710452,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,139625267,139625497,-,MHC_I,ENSMMUG00000053776;ENSMMUG00000060527;710452,NA;LOC710452,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,139637085,139637261,-,IgC1_MHC_Ib_HLA-Cw3-4,106997885,LOC106997885,mRNA,aa_OG0038001,TRUE
MHCI,macaque,4,139637811,139638068,-,MHC_I,106997885,LOC106997885,mRNA,aa_OG0038001,TRUE
MHCI,macaque,4,139638311,139638649,-,MHC_I,ENSMMUG00000060527;106997885,NA;LOC106997885,protein_coding;mRNA,aa_OG0000000;aa_OG0038001,TRUE
MHCI,macaque,4,139911223,139911513,-,IgC1_MHC_I_alpha3,ENSMMUG00000050761;699987,NA;LOC699987,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,139912107,139912337,-,MHC_I,ENSMMUG00000050761;699987,NA;LOC699987,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,139912617,139912931,-,MHC_I,ENSMMUG00000050761;114669808,NA;LOC114669808,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,139959963,139960256,-,IgC1_MHC_Ia_HLA-B,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139960862,139961147,-,MHC_I,ENSMMUG00000056914,MAMU-A,NA,NA,FALSE
MHCI,macaque,4,139973310,139973588,-,IgC1_MHC_I_alpha3,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139974191,139974457,-,MHC_I,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,139974698,139974970,-,MHC_I,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140023974,140024175,+,IgC1_MHC_I_alpha3,4_5:2,4_5:2,NA,NA,FALSE
MHCI,macaque,4,140027050,140027332,-,IgC1_MHC_I_alpha3,114677360,LOC114677360,mRNA,aa_OG0000000,TRUE
MHCI,macaque,4,140027924,140028175,-,MHC_I,114677360,LOC114677360,mRNA,aa_OG0000000,TRUE
MHCI,macaque,4,140040251,140040691,-,IgC1_MHC_I_alpha3,ENSMMUG00000050016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140041253,140041501,-,MHC_I,ENSMMUG00000050016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140041750,140042054,-,MHC_I,ENSMMUG00000050016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140081123,140081398,-,IgC1_MHC_Ia_HLA-B,4_6:1,4_6:1,NA,NA,FALSE
MHCI,macaque,4,140081997,140082266,-,MHC_I,4_6:1,4_6:1,NA,NA,FALSE
MHCI,macaque,4,140094199,140094477,-,IgC1_MHC_I_alpha3,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140095073,140095339,-,MHC_I,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140095579,140095851,-,MHC_I,ENSMMUG00000056914,MAMU-A,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140142636,140142927,-,IgC1_MHC_Ia_HLA-B,100429652,LOC100429652,pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,140143614,140143766,-,MHC_I,100429652,LOC100429652,pseudogene,aa_OG0000000,TRUE
MHCI,macaque,4,140159491,140159850,-,IgC1_MHC_I_alpha3,106995461,LOC106995461,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140159992,140160063,-,MHC_I,106995461,LOC106995461,NA,NA,FALSE
MHCI,macaque,4,140167605,140167896,-,IgC1_MHC_I_alpha3,4_7:2,4_7:2,NA,NA,FALSE
MHCI,macaque,4,140168603,140168857,-,MHC_I,4_7:3,4_7:3,NA,NA,FALSE
MHCI,macaque,4,140197747,140198034,-,IgC1_MHC_Ia_HLA-G,106995461,LOC106995461,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140198646,140198912,-,MHC_I,106995461,LOC106995461,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140218901,140219091,-,MHC_I,106995461,LOC106995461,NA,NA,FALSE
MHCI,macaque,4,140219338,140219610,-,MHC_I,106995461,LOC106995461,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140249752,140250024,+,MHC_I,ENSMMUG00000058325,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140250264,140250530,+,MHC_I,ENSMMUG00000058325,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140251133,140251411,+,IgC1_MHC_I_alpha3,ENSMMUG00000058325,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140260784,140261026,+,MHC_I,4_9:1,4_9:1,NA,NA,FALSE
MHCI,macaque,4,140262419,140262748,+,IgC1_MHC_Ia_HLA-B,ENSMMUG00000058325,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140293009,140293308,-,IgC1_MHC_Ia_HLA-G,106996077,LOC106996077,misc_RNA,rna_OG0185220,TRUE
MHCI,macaque,4,140293908,140294174,-,MHC_I,106996077,LOC106996077,misc_RNA,rna_OG0185220,TRUE
MHCI,macaque,4,140294398,140294658,-,MHC_I,ENSMMUG00000056914;106996077,MAMU-A;LOC106996077,protein_coding;misc_RNA,aa_OG0000000;rna_OG0185220,TRUE
MHCI,macaque,4,140346061,140346327,+,MHC_I,4_10:1,4_10:1,NA,NA,FALSE
MHCI,macaque,4,140346578,140346832,+,MHC_I,4_10:1,4_10:1,NA,NA,FALSE
MHCI,macaque,4,140347428,140347715,+,IgC1_MHC_I_alpha3,4_10:1,4_10:1,NA,NA,FALSE
MHCI,macaque,4,140357042,140357290,+,MHC_I,4_10:2,4_10:2,NA,NA,FALSE
MHCI,macaque,4,140357811,140358236,+,IgC1_MHC_Ia_HLA-B,4_10:2,4_10:2,NA,NA,FALSE
MHCI,macaque,4,140381015,140381353,-,IgC1_MHC_I_alpha3,4_10:3,4_10:3,NA,NA,FALSE
MHCI,macaque,4,140411079,140411396,-,IgC1_MHC_Ia_HLA-G,106992378,LOC106992378,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140411991,140412257,-,MHC_I,ENSMMUG00000043529;106992378,NA;LOC106992378,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140412480,140412740,-,MHC_I,ENSMMUG00000043529;106992378,NA;LOC106992378,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,4,140463363,140463635,+,MHC_I,ENSMMUG00000051745,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140463876,140464142,+,MHC_I,ENSMMUG00000051745,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140464745,140465023,+,IgC1_MHC_I_alpha3,ENSMMUG00000051745,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140472667,140473012,-,IgC1_MHC_I_alpha3,4_11:1,4_11:1,NA,NA,FALSE
MHCI,macaque,4,140473718,140473963,-,MHC_I,4_11:2,4_11:2,NA,NA,FALSE
MHCI,macaque,4,140511366,140511650,-,IgC1_MHC_I_alpha3,ENSMMUG00000008799,MAMU-F,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140512233,140512499,-,MHC_I,ENSMMUG00000008799,MAMU-F,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,140512743,140513021,-,MHC_I,ENSMMUG00000008799,MAMU-F,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,4,143917349,143917720,-,IgC1_MHC_I_alpha3,4_12:1,4_12:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,10552,10773,+,IgC1_MHC_I_alpha3,ML143117.1_1:1,ML143117.1_1:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,58727,59006,-,IgC1_MHC_I_alpha3,ML143117.1_1:2,ML143117.1_1:2,NA,NA,FALSE
MHCI,macaque,ML143117.1,59768,60013,-,MHC_I,ML143117.1_1:3,ML143117.1_1:3,NA,NA,FALSE
MHCI,macaque,ML143117.1,98229,98516,-,IgC1_MHC_I_alpha3,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,99096,99362,-,MHC_I,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,99605,99877,-,MHC_I,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,160070,160399,-,IgC1_MHC_I_alpha3,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,160981,161247,-,MHC_I,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,161490,161762,-,MHC_I,ENSMMUG00000050829,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,190494,190685,-,MHC_I,ENSMMUG00000063356,NA,lncRNA,aa_OG0038019,TRUE
MHCI,macaque,ML143117.1,190932,191201,-,MHC_I,ENSMMUG00000063356,NA,lncRNA,aa_OG0038019,TRUE
MHCI,macaque,ML143117.1,479616,479894,-,IgC1_MHC_I_alpha3,ML143117.1_2:1,ML143117.1_2:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,480476,480742,-,MHC_I,ML143117.1_2:1,ML143117.1_2:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,480985,481257,-,MHC_I,ML143117.1_2:1,ML143117.1_2:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,500197,500490,-,IgC1_MHC_I_alpha3,ENSMMUG00000064139,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,501069,501335,-,MHC_I,ENSMMUG00000064139,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,501578,501850,-,MHC_I,ENSMMUG00000064139,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,518655,518942,-,IgC1_MHC_I_alpha3,ENSMMUG00000064139;106995519,NA;LOC106995519,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,519524,519790,-,MHC_I,106995519,LOC106995519,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,520033,520290,-,MHC_I,106995519,LOC106995519,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,538277,538378,-,MHC_I,ML143117.1_3:1,ML143117.1_3:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,538399,538581,-,MHC_I,ML143117.1_3:1,ML143117.1_3:1,NA,NA,FALSE
MHCI,macaque,ML143117.1,563602,563880,-,IgC1_MHC_I_alpha3,723473,LOC723473,mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,564453,564719,-,MHC_I,ENSMMUG00000064139;723473,NA;LOC723473,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,564944,565204,-,MHC_I,ENSMMUG00000064139;723473,NA;LOC723473,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,607865,608158,-,IgC1_MHC_I_alpha3,ENSMMUG00000064139;719250,NA;LOC719250,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,608718,609011,-,MHC_I,719250,LOC719250,mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,609253,609525,-,MHC_I,719250,LOC719250,mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,628830,629162,-,IgC1_MHC_I_alpha3,719250,LOC719250,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,629660,629926,-,MHC_I,719250,LOC719250,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,630170,630442,-,MHC_I,719250,LOC719250,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,656706,656999,-,IgC1_MHC_I_alpha3,ENSMMUG00000064139;106996676,NA;LOC106996676,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,657580,657846,-,MHC_I,ENSMMUG00000064139;106996676,NA;LOC106996676,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,658089,658361,-,MHC_I,ENSMMUG00000064139;106996676,NA;LOC106996676,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,684988,685275,-,IgC1_MHC_I_alpha3,106992468,LOC106992468,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,685856,686117,-,MHC_I,106992468,LOC106992468,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,686425,686625,-,MHC_I,106992468,LOC106992468,misc_RNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,713403,713693,-,IgC1_MHC_I_alpha3,100424348,LOC100424348,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,714277,714543,-,MHC_I,100424348,LOC100424348,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,ML143117.1,714786,715058,-,MHC_I,100424348,LOC100424348,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,macaque,QNVO02001307.1,10719,10991,+,MHC_I,ENSMMUG00000064120,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02001307.1,11234,11500,+,MHC_I,ENSMMUG00000064120,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02001307.1,12080,12364,+,IgC1_MHC_I_alpha3,ENSMMUG00000064120,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,47962,48240,-,IgC1_MHC_I_alpha3,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,48822,49088,-,MHC_I,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,49329,49601,-,MHC_I,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,117662,117940,-,IgC1_MHC_I_alpha3,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,118522,118788,-,MHC_I,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,macaque,QNVO02002229.1,119029,119301,-,MHC_I,ENSMMUG00000052293,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ004664.1,2049191,2049328,+,MHC_I,KQ004664.1_1:1,KQ004664.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005374.1,24212,24502,-,IgC1_MHC_Ia_HLA-G,ENSMNEG00000006424;105491572,HLA-G;LOC105491572,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,25115,25378,-,MHC_I,ENSMNEG00000006424;105491572,HLA-G;LOC105491572,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,25619,25879,-,MHC_I,ENSMNEG00000006424;105491572,HLA-G;LOC105491572,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,56100,56351,+,MHC_I,105491570,LOC105491570,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,56950,57228,+,IgC1_MHC_I_alpha3,105491570,LOC105491570,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,69059,69397,-,IgC1_MHC_I_alpha3,KQ005374.1_1:1,KQ005374.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005374.1,70101,70346,-,MHC_I,KQ005374.1_1:1,KQ005374.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005374.1,105201,105485,-,IgC1_MHC_I_alpha3,ENSMNEG00000039482,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,106069,106335,-,MHC_I,ENSMNEG00000039482,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005374.1,106579,106857,-,MHC_I,ENSMNEG00000039482,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005642.1,15833,16003,+,MHC_I,KQ005642.1_1:1,KQ005642.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005998.1,845148,845423,-,IgC1_MHC_I_alpha3,KQ005998.1_1:1,KQ005998.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005998.1,992018,992752,+,MHC_I,105497654,LOC105497654,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,993355,993633,+,IgC1_MHC_I_alpha3,ENSMNEG00000033184;105497654,NA;LOC105497654,protein_coding;pseudogene,aa_OG0018025;aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1042804,1042860,+,MHC_I,105497659,LOC105497659,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1042901,1043068,+,MHC_I,105497659,LOC105497659,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1043672,1043965,+,IgC1_MHC_I_alpha3,105497659,LOC105497659,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1046178,1046450,+,MHC_I,ENSMNEG00000044496;105497653,NA;LOC105497653,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1046693,1046959,+,MHC_I,ENSMNEG00000044496;105497653,NA;LOC105497653,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1047541,1047834,+,IgC1_MHC_I_alpha3,ENSMNEG00000044496;ENSMNEG00000022987;105497653,NA;LOC105497653,protein_coding;miRNA;mRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1089634,1089906,+,MHC_I,ENSMNEG00000033279;105497650,NA;LOC105497650,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005998.1,1090630,1090902,+,MHC_I,ENSMNEG00000033279;105497650,NA;LOC105497650,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1091146,1091412,+,MHC_I,ENSMNEG00000033279;105497650,NA;LOC105497650,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1091910,1092242,+,IgC1_MHC_I_alpha3,ENSMNEG00000033279;105497650,NA;LOC105497650,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1093081,1093413,+,IgC1_MHC_I_alpha3,ENSMNEG00000033279;105497650,NA;LOC105497650,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ005998.1,1120469,1120741,+,MHC_I,ENSMNEG00000044496;105497649,NA;LOC105497649,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1120984,1121277,+,MHC_I,ENSMNEG00000044496;105497649,NA;LOC105497649,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1121829,1122113,+,IgC1_MHC_I_alpha3,ENSMNEG00000044496;105497649,NA;LOC105497649,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1196169,1196357,+,MHC_I,ENSMNEG00000044496;105497648,NA;LOC105497648,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1196685,1196741,+,MHC_I,ENSMNEG00000044496;105497648,NA;LOC105497648,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1196743,1196949,+,MHC_I,ENSMNEG00000044496;105497648,NA;LOC105497648,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1197531,1197818,+,IgC1_MHC_I_alpha3,ENSMNEG00000044496;ENSMNEG00000007840;105497648,NA;LOC105497648,protein_coding;miRNA;misc_RNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ005998.1,1246285,1246521,+,MHC_I,KQ005998.1_4:1,KQ005998.1_4:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006089.1,124,300,-,MHC_I,KQ006089.1_1:1,KQ006089.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,5047,5295,+,MHC_I,KQ006106.1_1:1,KQ006106.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,6679,7038,+,IgC1_MHC_I_alpha3,KQ006106.1_1:2,KQ006106.1_1:2,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,14713,14961,+,MHC_I,KQ006106.1_1:3,KQ006106.1_1:3,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,15508,15903,+,IgC1_MHC_I_alpha3,KQ006106.1_1:3,KQ006106.1_1:3,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,18790,18987,-,IgC1_MHC_I_alpha3,KQ006106.1_1:4,KQ006106.1_1:4,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,91255,91527,+,MHC_I,ENSMNEG00000039553;105498584,NA;MANE-A,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,91930,92196,+,MHC_I,ENSMNEG00000039553;105498584,NA;MANE-A,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,92816,93139,+,IgC1_MHC_I_alpha3,ENSMNEG00000039553;105498584,NA;MANE-A,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,104786,105047,+,MHC_I,KQ006106.1_2:1,KQ006106.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,105595,105933,+,IgC1_MHC_Ia_HLA-B,KQ006106.1_2:1,KQ006106.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,162162,162194,+,MHC_I,ENSMNEG00000044363;105498583,NA;LOC105498583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,162196,162324,+,MHC_I,ENSMNEG00000044363;105498583,NA;LOC105498583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,162326,162427,+,MHC_I,ENSMNEG00000044363;105498583,NA;LOC105498583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,162674,162932,+,MHC_I,105498583,LOC105498583,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,163522,163812,+,IgC1_MHC_I_alpha3,ENSMNEG00000044363;105498583,NA;LOC105498583,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,503670,504008,+,MHC_I,105498638,LOC105498638,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,504251,504508,+,MHC_I,105498638,LOC105498638,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,505053,505229,+,IgC1_MHC_Ib_HLA-Cw3-4,105498638,LOC105498638,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,517349,517612,+,MHC_I,105498601,LOC105498601,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,517864,518022,+,MHC_I,105498600,LOC105498600,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,518084,518140,+,MHC_I,105498600,LOC105498600,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,518742,519020,+,IgC1_MHC_I_alpha3,105498600;105498601,LOC105498600;LOC105498601,pseudogene;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,557549,557725,-,IgC1_MHC_I_alpha3,105498598,LOC105498598,ncRNA,aa_OG0019920,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,618717,618929,+,IgC1_MHC_Ib_HLA-E,KQ006106.1_3:1,KQ006106.1_3:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006106.1,743260,743532,+,MHC_I,ENSMNEG00000036536,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,743775,744092,+,MHC_I,ENSMNEG00000036536,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,744669,744962,+,IgC1_MHC_I_alpha3,ENSMNEG00000036536,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,777132,777371,+,MHC_I,ENSMNEG00000030835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,777386,777415,+,MHC_I,ENSMNEG00000030835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,777657,777974,+,MHC_I,ENSMNEG00000030835;105498640,NA;MANE-E,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006106.1,778547,778840,+,IgC1_MHC_I_alpha3,ENSMNEG00000030835;105498640,NA;MANE-E,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006534.1,46096,46375,-,IgC1_MHC_I_alpha3,KQ006534.1_1:1,KQ006534.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006534.1,225326,225592,-,MHC_I,105464109,MANE-B,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006534.1,225834,226106,-,MHC_I,105464109,MANE-B,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,19369,19680,+,MHC_I,105464139,LOC105464139,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,19923,20189,+,MHC_I,105464139,LOC105464139,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,20770,21048,+,IgC1_MHC_I_alpha3,105464139,LOC105464139,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,37976,38248,+,MHC_I,ENSMNEG00000043001;105464138,NA;MANE-B,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,38495,38761,+,MHC_I,ENSMNEG00000043001;105464138,NA;MANE-B,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,39342,39626,+,IgC1_MHC_I_alpha3,ENSMNEG00000043001;ENSMNEG00000016879;105464138,NA;MANE-B,protein_coding;miRNA;mRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,136561,136833,+,MHC_I,ENSMNEG00000043296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,137057,137323,+,MHC_I,ENSMNEG00000043296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,137903,138187,+,IgC1_MHC_I_alpha3,ENSMNEG00000043296,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,220485,220712,+,MHC_I,KQ006553.1_1:1,KQ006553.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006553.1,229062,229334,+,MHC_I,ENSMNEG00000043001,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,229572,229838,+,MHC_I,ENSMNEG00000043001,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,230421,230699,+,IgC1_MHC_I_alpha3,ENSMNEG00000043001,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006553.1,272171,272334,+,MHC_I,KQ006553.1_2:1,KQ006553.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006553.1,273090,273369,+,IgC1_MHC_I_alpha3,KQ006553.1_2:1,KQ006553.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006858.1,51449,51736,-,IgC1_MHC_I_alpha3,ENSMNEG00000039432;ENSMNEG00000015946,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ006858.1,52319,52585,-,MHC_I,ENSMNEG00000039432,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006858.1,52833,53105,-,MHC_I,ENSMNEG00000039432,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006858.1,126427,126711,-,IgC1_MHC_I_alpha3,ENSMNEG00000023163;105466242,NA;LOC105466242,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,33646,33978,+,MHC_I,ENSMNEG00000028255;105466477,NA;MANE-B,protein_coding;mRNA,aa_OG0019859,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,34221,34481,+,MHC_I,105466477,MANE-B,mRNA,aa_OG0019859,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,53368,53541,+,MHC_I,ENSMNEG00000028255,NA,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006979.1,53784,54053,+,MHC_I,ENSMNEG00000028255,NA,protein_coding,aa_OG0019859,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,59135,59407,+,MHC_I,ENSMNEG00000028282,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,59650,59916,+,MHC_I,ENSMNEG00000028282,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ006979.1,151087,151353,+,MHC_I,ENSMNEG00000028282;ENSMNEG00000023099,NA,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ006979.1,151935,152222,+,IgC1_MHC_I_alpha3,ENSMNEG00000028282;ENSMNEG00000023099,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,28803,29018,+,MHC_I,105466787,LOC105466787,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,29029,29067,+,MHC_I,105466787,LOC105466787,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,29317,29583,+,MHC_I,105466787,LOC105466787,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007058.1,30151,30425,+,IgC1_MHC_I_alpha3,105466787,LOC105466787,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007058.1,45165,45416,+,MHC_I,112424063,LOC112424063,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,46008,46290,+,IgC1_MHC_I_alpha3,112424063,LOC112424063,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,49230,49431,-,IgC1_MHC_I_alpha3,KQ007058.1_2:1,KQ007058.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007058.1,103345,103617,+,MHC_I,ENSMNEG00000040273;105466783,NA;LOC105466783,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,103857,104122,+,MHC_I,ENSMNEG00000040273;105466783,NA;LOC105466783,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,104723,105001,+,IgC1_MHC_I_alpha3,ENSMNEG00000040273;105466783,NA;LOC105466783,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,123140,123382,+,MHC_I,105466788,LOC105466788,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,123984,124259,+,IgC1_MHC_Ia_HLA-B,105466788,LOC105466788,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,176277,176542,+,MHC_I,105466781,LOC105466781,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007058.1,191534,191785,+,MHC_I,KQ007058.1_3:1,KQ007058.1_3:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007058.1,192377,192659,+,IgC1_MHC_I_alpha3,KQ007058.1_3:1,KQ007058.1_3:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007058.1,195535,195736,-,IgC1_MHC_I_alpha3,KQ007058.1_3:2,KQ007058.1_3:2,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,87715,87906,-,MHC_I,KQ007160.1_1:1,KQ007160.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,88206,88425,-,MHC_I,KQ007160.1_1:1,KQ007160.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,89290,89555,-,MHC_I,KQ007160.1_1:1,KQ007160.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,92718,92943,-,MHC_I,KQ007160.1_1:2,KQ007160.1_1:2,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,120998,121270,+,MHC_I,ENSMNEG00000034234,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007160.1,130463,130708,+,MHC_I,KQ007160.1_2:1,KQ007160.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007160.1,131233,131406,+,IgC1_MHC_Ia_HLA-B,KQ007160.1_2:1,KQ007160.1_2:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007189.1,10439,10600,-,MHC_I,KQ007189.1_1:1,KQ007189.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007189.1,68711,68991,-,IgC1_MHC_I_alpha3,105467296,LOC105467296,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007189.1,69743,70009,-,MHC_I,105467296,LOC105467296,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007189.1,70234,70494,-,MHC_I,105467296,LOC105467296,misc_RNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007189.1,122171,122464,-,IgC1_MHC_I_alpha3,ENSMNEG00000003137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007189.1,123023,123316,-,MHC_I,ENSMNEG00000003137,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007425.1,7635,7913,-,IgC1_MHC_I_alpha3,ENSMNEG00000041591;105467986,NA;Mane-B,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007425.1,8495,8668,-,MHC_I,ENSMNEG00000041591;105467986,NA;Mane-B,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007425.1,8871,9143,-,MHC_I,ENSMNEG00000041591;105467986,NA;Mane-B,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007691.1,55106,55393,+,IgC1_MHC_I_alpha3,ENSMNEG00000012448;105468977,NA;Mane-B,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,30073,30327,+,MHC_I,105469854,LOC105469854,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,31032,31320,+,IgC1_MHC_I_alpha3,105469854,LOC105469854,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,41894,41965,+,MHC_I,105469854,LOC105469854,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,42107,42466,+,IgC1_MHC_I_alpha3,105469854,LOC105469854,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,56029,56181,+,MHC_I,105469853,LOC105469853,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,56193,56276,+,MHC_I,105469853,LOC105469853,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,56868,57146,+,IgC1_MHC_Ia_HLA-B,105469853,LOC105469853,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,105990,106262,+,MHC_I,ENSMNEG00000034835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,106502,106768,+,MHC_I,ENSMNEG00000034835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,107364,107642,+,IgC1_MHC_I_alpha3,ENSMNEG00000034835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ007777.1,120414,120683,+,MHC_I,105469855,LOC105469855,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007777.1,121282,121557,+,IgC1_MHC_Ia_HLA-B,105469855,LOC105469855,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ007777.1,122004,122279,+,IgC1_MHC_Ia_HLA-B,105469855,LOC105469855,ncRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008059.1,7553,7838,+,MHC_I,KQ008059.1_1:1,KQ008059.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ008059.1,8449,8742,+,IgC1_MHC_Ia_HLA-B,KQ008059.1_1:1,KQ008059.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ008149.1,9005,9262,+,MHC_I,ENSMNEG00000000076,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008149.1,9499,9765,+,MHC_I,ENSMNEG00000000076,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008149.1,10346,10633,+,IgC1_MHC_I_alpha3,ENSMNEG00000000076;ENSMNEG00000012754,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,pig.tailed.macaque,KQ008306.1,35264,35551,-,IgC1_MHC_I_alpha3,KQ008306.1_1:1,KQ008306.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ008306.1,36197,36508,-,MHC_I,KQ008306.1_1:1,KQ008306.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ008478.1,10141,10212,+,MHC_I,105471721,LOC105471721,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008478.1,10785,10952,+,IgC1_MHC_Ia_HLA-F,105471721,LOC105471721,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008478.1,11959,12075,+,IgC1_MHC_I_alpha3,105471721,LOC105471721,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ008599.1,40980,41258,-,IgC1_MHC_I_alpha3,105472067,LOC105472067,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009016.1,471791,472012,+,IgC1_MHC_Ib_HLA-E,KQ009016.1_1:1,KQ009016.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ009052.1,13117,13374,-,MHC_I,105475246,Mane-E,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009239.1,116,332,-,MHC_I,KQ009239.1_1:1,KQ009239.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ009304.1,13781526,13781786,+,MHC_I,ENSMNEG00000035541;105481091,NA;LOC105481091,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009304.1,13782010,13782276,+,MHC_I,ENSMNEG00000035541;105481091,NA;LOC105481091,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009304.1,13782878,13783165,+,IgC1_MHC_I_alpha3,105481091,LOC105481091,pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009304.1,13841899,13842275,-,IgC1_MHC_Ia_HLA-B,KQ009304.1_1:1,KQ009304.1_1:1,NA,NA,FALSE
MHCI,pig.tailed.macaque,KQ009304.1,13856200,13856478,-,IgC1_MHC_I_alpha3,105481116,LOC105481116,mRNA,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009304.1,13895954,13896230,+,MHC_I,ENSMNEG00000038096;105481092,NA;LOC105481092,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,pig.tailed.macaque,KQ009304.1,13896475,13896666,+,MHC_I,105481093,LOC105481093,mRNA,aa_OG0038019,TRUE
MHCI,vervet.agm,9,92051140,92051373,+,IgC1_MHC_H-2_TLA,9_1:1,9_1:1,NA,NA,FALSE
MHCI,vervet.agm,15,91351242,91351481,+,IgC1_MHC_Ia_HLA-G,15_1:1,15_1:1,NA,NA,FALSE
MHCI,vervet.agm,17,39199684,39199989,-,IgC1_MHC_Ib_HLA-E,17_1:1,17_1:1,NA,NA,FALSE
MHCI,vervet.agm,17,40557482,40557745,+,MHC_I,103221792,LOC103221792,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40557996,40558253,+,MHC_I,103221792,LOC103221792,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40558855,40559133,+,IgC1_MHC_I_alpha3,103221792,LOC103221792,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40617346,40617618,+,MHC_I,17_2:1,17_2:1,NA,NA,FALSE
MHCI,vervet.agm,17,40617860,40618126,+,MHC_I,17_2:1,17_2:1,NA,NA,FALSE
MHCI,vervet.agm,17,40638833,40639105,+,MHC_I,ENSCSAG00000008482;103222360,NA;LOC103222360,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40639348,40639614,+,MHC_I,ENSCSAG00000008482;103222360,NA;LOC103222360,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40640193,40640387,+,IgC1_MHC_I_alpha3,ENSCSAG00000008482;103222360,NA;LOC103222360,NA,NA,FALSE
MHCI,vervet.agm,17,40709665,40709943,+,IgC1_MHC_I_alpha3,ENSCSAG00000008482;103222360,NA;LOC103222360,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40758849,40759121,+,MHC_I,103221786,LOC103221786,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40759364,40759639,+,MHC_I,103221786,LOC103221786,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40760212,40760499,+,IgC1_MHC_I_alpha3,ENSCSAG00000027144;103221786,NA;LOC103221786,miRNA;mRNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,vervet.agm,17,40811921,40812157,+,MHC_I,ENSCSAG00000008475;103222361,NA;LOC103222361,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40812401,40812667,+,MHC_I,ENSCSAG00000008475;103222361,NA;LOC103222361,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40813214,40813492,+,IgC1_MHC_I_alpha3,103222361,LOC103222361,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40818802,40818915,+,MHC_I,17_4:1,17_4:1,NA,NA,FALSE
MHCI,vervet.agm,17,40841759,40842031,+,MHC_I,103222362,LOC103222362,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40842274,40842567,+,MHC_I,103222362,LOC103222362,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40843127,40843405,+,IgC1_MHC_I_alpha3,103222362,LOC103222362,mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40869343,40869648,+,MHC_I,17_5:1,17_5:1,NA,NA,FALSE
MHCI,vervet.agm,17,40896158,40896430,+,MHC_I,103221783,LOC103221783,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40896672,40896938,+,MHC_I,103221783,LOC103221783,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40897520,40897807,+,IgC1_MHC_I_alpha3,ENSCSAG00000008475;ENSCSAG00000027655;103221783,NA;LOC103221783,protein_coding;miRNA;misc_RNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,vervet.agm,17,40916756,40917073,+,MHC_I,ENSCSAG00000008447,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40917316,40917582,+,MHC_I,ENSCSAG00000008447,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40918165,40918443,+,IgC1_MHC_I_alpha3,ENSCSAG00000008447,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40969363,40969635,+,MHC_I,103221779,LOC103221779,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40969878,40970138,+,MHC_I,103221779,LOC103221779,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,40970726,40971010,+,IgC1_MHC_I_alpha3,103221779,LOC103221779,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41028997,41029269,+,MHC_I,ENSCSAG00000008434;103221775,NA;LOC103221775,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41029511,41029777,+,MHC_I,ENSCSAG00000008434;103221775,NA;LOC103221775,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41030358,41030636,+,IgC1_MHC_I_alpha3,ENSCSAG00000008434;103221775,NA;LOC103221775,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41110343,41110615,+,MHC_I,ENSCSAG00000008426;103221773,NA;LOC103221773,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41110857,41111123,+,MHC_I,ENSCSAG00000008426;103221773,NA;LOC103221773,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41111704,41111982,+,IgC1_MHC_I_alpha3,ENSCSAG00000008426;103221773,NA;LOC103221773,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41184625,41184897,+,MHC_I,103221771,LOC103221771,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41185134,41185400,+,MHC_I,103221771,LOC103221771,misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41185982,41186269,+,IgC1_MHC_I_alpha3,ENSCSAG00000027429;103221771,NA;LOC103221771,miRNA;misc_RNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,vervet.agm,17,41224085,41224321,+,MHC_I,17_6:1,17_6:1,NA,NA,FALSE
MHCI,vervet.agm,17,41225097,41225264,+,IgC1_MHC_I_alpha3,17_6:1,17_6:1,NA,NA,FALSE
MHCI,vervet.agm,17,41943881,41944174,-,IgC1_MHC_I_alpha3,ENSCSAG00000008172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41944745,41945062,-,MHC_I,ENSCSAG00000008172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41945305,41945577,-,MHC_I,ENSCSAG00000008172,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41962953,41963246,-,IgC1_MHC_I_alpha3,ENSCSAG00000008166,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41963823,41964140,-,MHC_I,ENSCSAG00000008166,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,41964383,41964640,-,MHC_I,ENSCSAG00000008166,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42137270,42137482,-,IgC1_MHC_Ib_HLA-E,17_7:1,17_7:1,NA,NA,FALSE
MHCI,vervet.agm,17,42198245,42198421,+,IgC1_MHC_I_alpha3,17_7:2,17_7:2,NA,NA,FALSE
MHCI,vervet.agm,17,42229680,42229955,-,IgC1_MHC_I_alpha3,103221855,LOC103221855,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42230545,42230828,-,MHC_I,103221855,LOC103221855,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42231080,42231352,-,MHC_I,103221855,LOC103221855,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42242855,42243031,-,IgC1_MHC_Ib_HLA-Cw3-4,17_8:1,17_8:1,NA,NA,FALSE
MHCI,vervet.agm,17,42243575,42243832,-,MHC_I,17_8:1,17_8:1,NA,NA,FALSE
MHCI,vervet.agm,17,42246912,42247131,-,MHC_I,103222329,LOC103222329,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42496123,42496404,-,IgC1_MHC_I_alpha3,103221843,LOC103221843,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42497006,42497296,-,MHC_I,103221843,LOC103221843,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42497521,42497760,-,MHC_I,103221843,LOC103221843,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42497762,42497833,-,MHC_I,103221843,LOC103221843,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42631156,42631437,-,IgC1_MHC_I_alpha3,103221839,LOC103221839,NA,NA,FALSE
MHCI,vervet.agm,17,42632032,42632359,-,MHC_I,103221839,LOC103221839,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42632543,42632755,-,MHC_I,103221839,LOC103221839,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42676864,42677157,-,IgC1_MHC_Ia_HLA-B,17_10:1,17_10:1,NA,NA,FALSE
MHCI,vervet.agm,17,42677847,42678000,-,MHC_I,17_10:1,17_10:1,NA,NA,FALSE
MHCI,vervet.agm,17,42690142,42690420,-,IgC1_MHC_I_alpha3,ENSCSAG00000008095,Chsa-A,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42691024,42691290,-,MHC_I,ENSCSAG00000008095,Chsa-A,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42691530,42691802,-,MHC_I,ENSCSAG00000008095,Chsa-A,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42739146,42739436,-,IgC1_MHC_I_alpha3,17_11:1,17_11:1,NA,NA,FALSE
MHCI,vervet.agm,17,42740144,42740398,-,MHC_I,17_11:1,17_11:1,NA,NA,FALSE
MHCI,vervet.agm,17,42768838,42769140,-,IgC1_MHC_Ia_HLA-G,103221871,LOC103221871,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42769738,42770004,-,MHC_I,103221871,LOC103221871,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42770237,42770488,-,MHC_I,103221871,LOC103221871,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42793023,42793223,-,MHC_I,17_12:1,17_12:1,NA,NA,FALSE
MHCI,vervet.agm,17,42793471,42793738,-,MHC_I,17_12:1,17_12:1,NA,NA,FALSE
MHCI,vervet.agm,17,42821999,42822319,+,MHC_I,ENSCSAG00000008089;103221867,NA;LOC103221867,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42822560,42822826,+,MHC_I,ENSCSAG00000008089;103221867,NA;LOC103221867,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42823429,42823707,+,IgC1_MHC_I_alpha3,ENSCSAG00000008089;103221867,NA;LOC103221867,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42836281,42836541,+,MHC_I,17_13:1,17_13:1,NA,NA,FALSE
MHCI,vervet.agm,17,42837150,42837442,+,IgC1_MHC_Ia_HLA-B,17_13:1,17_13:1,NA,NA,FALSE
MHCI,vervet.agm,17,42860360,42860705,-,IgC1_MHC_I_alpha3,17_13:2,17_13:2,NA,NA,FALSE
MHCI,vervet.agm,17,42900727,42901011,-,IgC1_MHC_I_alpha3,ENSCSAG00000008083;103221863,HLA-F;LOC103221863,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42901594,42901860,-,MHC_I,ENSCSAG00000008083;103221863,HLA-F;LOC103221863,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,42902104,42902370,-,MHC_I,ENSCSAG00000008083;103221863,HLA-F;LOC103221863,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,vervet.agm,17,46183125,46183427,-,IgC1_MHC_I_alpha3,17_14:1,17_14:1,NA,NA,FALSE
MHCI,vervet.agm,AQIB01159186.1,2183,2476,-,IgC1_MHC_Ia_HLA-B,AQIB01159186.1_1:1,AQIB01159186.1_1:1,NA,NA,FALSE
MHCI,vervet.agm,AQIB01159186.1,3167,3317,-,MHC_I,AQIB01159186.1_1:1,AQIB01159186.1_1:1,NA,NA,FALSE
MHCI,vervet.agm,KE147669.1,14867,15160,-,IgC1_MHC_Ia_HLA-B,KE147669.1_1:1,KE147669.1_1:1,NA,NA,FALSE
MHCI,vervet.agm,KE147669.1,15851,16001,-,MHC_I,KE147669.1_1:1,KE147669.1_1:1,NA,NA,FALSE
MHCI,vervet.agm,KE148042.1,44772,45000,+,IgC1_MHC_I_alpha3,KE148042.1_1:1,KE148042.1_1:1,NA,NA,FALSE
MHCI,vervet.agm,KE148042.1,47911,48193,-,IgC1_MHC_I_alpha3,KE148042.1_1:2,KE148042.1_1:2,NA,NA,FALSE
MHCI,vervet.agm,KE148042.1,48784,49035,-,MHC_I,KE148042.1_1:2,KE148042.1_1:2,NA,NA,FALSE
MHCI,vervet.agm,KE148042.1,61235,61510,-,IgC1_MHC_I_alpha3,103247143,LOC103247143,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,62118,62385,-,MHC_I,103247143,LOC103247143,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,62650,62916,-,MHC_I,103247143,LOC103247143,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,74553,74675,-,IgC1_MHC_I_alpha3,103247141,LOC103247141,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,75490,75654,-,IgC1_MHC_Ia_HLA-B,103247141,LOC103247141,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,76256,76509,-,MHC_I,103247141,LOC103247141,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,76702,76957,-,MHC_I,103247141,LOC103247141,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,103448,103825,-,IgC1_MHC_Ia_HLA-B,103247145,LOC103247145,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,104341,104589,-,MHC_I,103247145,LOC103247145,pseudogene,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,113610,113888,-,IgC1_MHC_I_alpha3,ENSCSAG00000018298,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,114492,114758,-,MHC_I,ENSCSAG00000018298,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148042.1,114995,115270,-,MHC_I,ENSCSAG00000018298,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148043.1,16629,16901,+,MHC_I,ENSCSAG00000018299,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148043.1,17139,17405,+,MHC_I,ENSCSAG00000018299,NA,protein_coding,aa_OG0000000,TRUE
MHCI,vervet.agm,KE148043.1,17983,18270,+,IgC1_MHC_I_alpha3,ENSCSAG00000018299,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980163.1,2739227,2739367,+,IgC1_MHC_Ib_HLA-E,KN980163.1_1:1,KN980163.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980837.1,12380,12526,+,IgC1_MHC_Ia_HLA-F,KN980837.1_1:1,KN980837.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980895.1,15833,16117,-,IgC1_MHC_I_alpha3,ENSCANG00000033976,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980895.1,16671,16901,-,MHC_I,ENSCANG00000033976,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980895.1,233792,234100,+,IgC1_MHC_I_alpha3,KN980895.1_1:1,KN980895.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980895.1,1679151,1679399,+,IgC1_MHC_Ib_HLA-E,KN980895.1_1:2,KN980895.1_1:2,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,57417,57699,-,IgC1_MHC_I_alpha3,KN980906.1_1:1,KN980906.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,58291,58539,-,MHC_I,KN980906.1_1:1,KN980906.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,71061,71340,-,IgC1_MHC_I_alpha3,105513909,LOC105513909,misc_RNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,71482,71553,-,MHC_I,105513909,LOC105513909,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,78705,78995,-,IgC1_MHC_I_alpha3,KN980906.1_2:2,KN980906.1_2:2,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,79789,79953,-,MHC_I,KN980906.1_2:3,KN980906.1_2:3,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,80332,80442,-,MHC_I,KN980906.1_2:3,KN980906.1_2:3,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,115227,115508,-,IgC1_MHC_Ia_HLA-G,105513909,LOC105513909,misc_RNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,116106,116372,-,MHC_I,105513909,LOC105513909,misc_RNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,140538,140753,-,MHC_I,KN980906.1_3:1,KN980906.1_3:1,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,160923,161195,+,MHC_I,ENSCANG00000031132,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,161436,161702,+,MHC_I,ENSCANG00000031132,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,162302,162580,+,IgC1_MHC_I_alpha3,ENSCANG00000031132,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,175221,175499,-,IgC1_MHC_I_alpha3,KN980906.1_4:1,KN980906.1_4:1,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,176188,176433,-,MHC_I,KN980906.1_4:2,KN980906.1_4:2,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,244341,244640,-,IgC1_MHC_I_alpha3,ENSCANG00000043607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,245201,245470,-,MHC_I,ENSCANG00000043607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,245800,246072,-,MHC_I,ENSCANG00000043607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,284166,284469,-,IgC1_MHC_I_alpha3,KN980906.1_5:1,KN980906.1_5:1,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,319153,319284,-,IgC1_MHC_I_alpha3,KN980906.1_5:3,KN980906.1_5:3,NA,NA,FALSE
MHCI,angola.colobus,KN980906.1,320191,320457,-,MHC_I,ENSCANG00000021683,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980906.1,320701,320967,-,MHC_I,ENSCANG00000021683,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,5495,5731,+,MHC_I,ENSCANG00000030036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,5974,6240,+,MHC_I,ENSCANG00000030036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,6787,7071,+,IgC1_MHC_I_alpha3,ENSCANG00000030036;ENSCANG00000003275,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,angola.colobus,KN980916.1,26099,26371,+,MHC_I,105513934,LOC105513934,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,34635,34901,+,MHC_I,105513934,LOC105513934,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,35488,35772,+,IgC1_MHC_I_alpha3,ENSCANG00000043690;105513934,NA;LOC105513934,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,65957,66199,+,MHC_I,KN980916.1_1:1,KN980916.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,96087,96356,+,MHC_I,ENSCANG00000033174,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,96592,96838,+,MHC_I,ENSCANG00000033174,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,97420,97707,+,IgC1_MHC_I_alpha3,ENSCANG00000033174;ENSCANG00000009056,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,angola.colobus,KN980916.1,125022,125078,+,MHC_I,105513986,LOC105513986,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,125659,125937,+,IgC1_MHC_I_alpha3,105513986,LOC105513986,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,229503,229652,+,IgC1_MHC_I_alpha3,KN980916.1_2:1,KN980916.1_2:1,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,271241,271520,+,IgC1_MHC_I_alpha3,KN980916.1_2:2,KN980916.1_2:2,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,1125268,1125561,-,IgC1_MHC_I_alpha3,ENSCANG00000007194,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1126136,1126453,-,MHC_I,ENSCANG00000007194,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1126695,1126967,-,MHC_I,ENSCANG00000007194,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1190814,1191107,-,IgC1_MHC_I_alpha3,ENSCANG00000028775,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1191682,1191996,-,MHC_I,ENSCANG00000028775,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1192248,1192514,-,MHC_I,ENSCANG00000028775,NA,protein_coding,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1318820,1319032,-,IgC1_MHC_Ia_HLA-B,KN980916.1_3:1,KN980916.1_3:1,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,1418566,1418865,-,IgC1_MHC_Ia_HLA-B,105513978,LOC105513978,pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1419456,1419730,-,MHC_I,105513978,LOC105513978,pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1419976,1420314,-,MHC_I,ENSCANG00000021679;105513978,NA;LOC105513978,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1431825,1431986,-,IgC1_MHC_Ia_HLA-B,105513993,LOC105513993,pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1432556,1432702,-,MHC_I,105513993,LOC105513993,pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1433224,1433460,-,MHC_I,105513993,LOC105513993,pseudogene,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1718244,1718525,-,IgC1_MHC_I_alpha3,KN980916.1_4:1,KN980916.1_4:1,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,1778351,1778644,-,IgC1_MHC_Ia_HLA-B,KN980916.1_4:2,KN980916.1_4:2,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,1779331,1779495,-,MHC_I,KN980916.1_4:3,KN980916.1_4:3,NA,NA,FALSE
MHCI,angola.colobus,KN980916.1,1785093,1785389,-,IgC1_MHC_I_alpha3,105513995,LOC105513995,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1785987,1786160,-,MHC_I,105513995,LOC105513995,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980916.1,1786599,1786745,-,MHC_I,105513995,LOC105513995,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN980978.1,11615,11833,-,MHC_I,105514383,LOC105514383,mRNA,aa_OG0019859,TRUE
MHCI,angola.colobus,KN985185.1,6350,6535,-,MHC_I,KN985185.1_1:1,KN985185.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN985722.1,1017755,1017994,+,IgC1_MHC_I_M144,KN985722.1_1:1,KN985722.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN985737.1,48946,49059,-,IgC1_MHC_Ia_HLA-B,KN985737.1_1:1,KN985737.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN985737.1,76405,76638,-,IgC1_MHC_I_alpha3,105502148,LOC105502148,mRNA,aa_OG0000000,TRUE
MHCI,angola.colobus,KN985827.1,13937,14219,-,IgC1_MHC_I_alpha3,KN985827.1_1:1,KN985827.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN985827.1,14797,15045,-,MHC_I,KN985827.1_1:1,KN985827.1_1:1,NA,NA,FALSE
MHCI,angola.colobus,KN985827.1,15943,16132,-,MHC_I,KN985827.1_1:2,KN985827.1_1:2,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,581485,581751,+,MHC_I,ENSRBIG00000035680,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,581995,582261,+,MHC_I,ENSRBIG00000035680,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,582852,583136,+,IgC1_MHC_I_alpha3,ENSRBIG00000035680,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,626818,627145,+,IgC1_MHC_I_alpha3,MCGX01001883.1_1:2,MCGX01001883.1_1:2,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,663308,663562,+,MHC_I,ENSRBIG00000027463;108528432,NA;LOC108528432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,663790,664059,+,MHC_I,ENSRBIG00000027463;108528432,NA;LOC108528432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,664651,665067,+,IgC1_MHC_I_alpha3,ENSRBIG00000027463;108528432,NA;LOC108528432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,720418,720663,+,MHC_I,MCGX01001883.1_2:1,MCGX01001883.1_2:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,721655,722006,+,IgC1_MHC_I_alpha3,MCGX01001883.1_2:2,MCGX01001883.1_2:2,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,742986,743359,-,IgC1_MHC_Ia_HLA-B,108528406,LOC108528406,pseudogene,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,743885,744133,-,MHC_I,108528406,LOC108528406,pseudogene,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,752050,752328,-,IgC1_MHC_I_alpha3,ENSRBIG00000018203;108528433,NA;LOC108528433,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,752931,753197,-,MHC_I,ENSRBIG00000018203;108528433,NA;LOC108528433,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,753438,753710,-,MHC_I,ENSRBIG00000018203;108528433,NA;LOC108528433,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,783849,784115,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,784363,784554,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,808213,808251,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,808256,808492,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,808716,808982,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,809591,809869,+,IgC1_MHC_Ia_HLA-G,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,837329,837583,+,MHC_I,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,838287,838577,+,IgC1_MHC_I_alpha3,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,846165,846444,+,IgC1_MHC_I_alpha3,108528437,LOC108528437,pseudogene,aa_OG0023094,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,862207,862272,+,MHC_I,108528407,LOC108528407,pseudogene,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,862278,862340,+,MHC_I,108528407,LOC108528407,pseudogene,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,863031,863322,+,IgC1_MHC_I_alpha3,108528407,LOC108528407,pseudogene,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,910295,910558,+,MHC_I,MCGX01001883.1_3:1,MCGX01001883.1_3:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,910807,911073,+,MHC_I,MCGX01001883.1_3:1,MCGX01001883.1_3:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,911689,911958,+,IgC1_MHC_I_alpha3,MCGX01001883.1_3:1,MCGX01001883.1_3:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,929526,929801,+,MHC_I,MCGX01001883.1_3:2,MCGX01001883.1_3:2,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,932733,932925,-,IgC1_MHC_I_alpha3,MCGX01001883.1_3:3,MCGX01001883.1_3:3,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,985626,985898,+,MHC_I,ENSRBIG00000042912,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,986139,986405,+,MHC_I,ENSRBIG00000042912,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,987003,987281,+,IgC1_MHC_I_alpha3,ENSRBIG00000042912,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,992828,992992,+,MHC_I,MCGX01001883.1_4:1,MCGX01001883.1_4:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,992998,993078,+,MHC_I,MCGX01001883.1_4:1,MCGX01001883.1_4:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,993665,993967,+,IgC1_MHC_Ia_HLA-B,MCGX01001883.1_4:1,MCGX01001883.1_4:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,1036072,1036143,+,MHC_I,108528434,LOC108528434,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,1036145,1036378,+,MHC_I,108528434,LOC108528434,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,1036627,1036902,+,MHC_I,108528434,LOC108528434,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01001883.1,1037498,1037779,+,IgC1_MHC_I_alpha3,108528434,LOC108528434,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,1533,1817,-,IgC1_MHC_I_alpha3,ENSRBIG00000031140;ENSRBIG00000004987;108543097,NA;LOC108543097,protein_coding;miRNA;mRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,2400,2666,-,MHC_I,108543097,LOC108543097,mRNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,2903,3163,-,MHC_I,108543097,LOC108543097,mRNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,34929,35297,-,IgC1_MHC_I_alpha3,ENSRBIG00000031140;ENSRBIG00000004999;108543094,NA;LOC108543094,protein_coding;miRNA;misc_RNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,35872,36138,-,MHC_I,ENSRBIG00000035657;108543094,NA;LOC108543094,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,36388,36660,-,MHC_I,ENSRBIG00000035657;108543094,NA;LOC108543094,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,45809,46132,-,IgC1_MHC_I_alpha3,108543102,LOC108543102,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,46665,46931,-,MHC_I,ENSRBIG00000031140;108543102,NA;LOC108543102,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,47177,47503,-,MHC_I,ENSRBIG00000031140;108543102,NA;LOC108543102,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,114057,114344,-,IgC1_MHC_I_alpha3,ENSRBIG00000031140,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,114926,115192,-,MHC_I,ENSRBIG00000031140,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,115447,115719,-,MHC_I,ENSRBIG00000031140,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,124848,125354,-,IgC1_MHC_I_alpha3,108543100,LOC108543100,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,125927,126193,-,MHC_I,ENSRBIG00000031140;108543100,NA;LOC108543100,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,126433,126711,-,MHC_I,ENSRBIG00000031140;108543100,NA;LOC108543100,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,144544,144831,-,IgC1_MHC_I_alpha3,ENSRBIG00000005018;108543101,NA;LOC108543101,miRNA;misc_RNA,rna_OG0017629;aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,145411,145689,-,MHC_I,108543101,LOC108543101,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,145932,146204,-,MHC_I,ENSRBIG00000031140;108543101,NA;LOC108543101,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,195064,195348,-,IgC1_MHC_I_alpha3,ENSRBIG00000018682,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,195946,196212,-,MHC_I,ENSRBIG00000018682,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01008220.1,196455,196718,-,MHC_I,ENSRBIG00000018682,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01010691.1,167512,167616,-,IgC1_MHC_Ib_HLA-Cw3-4,MCGX01010691.1_1:1,MCGX01010691.1_1:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01017294.1,506455,506777,-,IgC1_MHC_I_alpha3,MCGX01017294.1_1:1,MCGX01017294.1_1:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,40289,40531,+,MHC_I,MCGX01022385.1_1:1,MCGX01022385.1_1:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,41299,41578,+,IgC1_MHC_I_alpha3,MCGX01022385.1_1:2,MCGX01022385.1_1:2,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,92159,92413,-,IgC1_MHC_I_alpha3,MCGX01022385.1_1:3,MCGX01022385.1_1:3,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,805722,806096,-,IgC1_MHC_I_alpha3,ENSRBIG00000036367,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,806671,806985,-,MHC_I,ENSRBIG00000036367,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,807232,807489,-,MHC_I,ENSRBIG00000036367,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,894454,894716,-,MHC_I,108522547,LOC108522547,pseudogene,aa_OG0005083,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,978948,979079,-,IgC1_MHC_Ib_HLA-E,MCGX01022385.1_2:1,MCGX01022385.1_2:1,NA,NA,FALSE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1074933,1075247,-,IgC1_MHC_I_alpha3,108522566,LOC108522566,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1075841,1076112,-,MHC_I,108522566,LOC108522566,misc_RNA,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1076358,1076696,-,MHC_I,ENSRBIG00000038175;108522566,NA;LOC108522566,protein_coding;misc_RNA,aa_OG0038282;aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1089657,1089818,-,IgC1_MHC_Ia_HLA-B,108522548,LOC108522548,pseudogene,aa_OG0005509,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1090389,1090643,-,MHC_I,108522548,LOC108522548,pseudogene,aa_OG0005509,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1091124,1091267,-,MHC_I,108522548,LOC108522548,pseudogene,aa_OG0005509,TRUE
MHCI,black.snub.nosed.monkey,MCGX01022385.1,1091528,1091767,-,MHC_I,108522548,LOC108522548,pseudogene,aa_OG0005509,TRUE
MHCI,black.snub.nosed.monkey,MCGX01072921.1,1097,1369,+,MHC_I,ENSRBIG00000018607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01072921.1,1612,1878,+,MHC_I,ENSRBIG00000018607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01072921.1,2460,2738,+,IgC1_MHC_I_alpha3,ENSRBIG00000018607,NA,protein_coding,aa_OG0000000,TRUE
MHCI,black.snub.nosed.monkey,MCGX01103164.1,1571,1705,-,IgC1_MHC_I_alpha3,108526124,LOC108526124,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,JABR01028479.1,15937,16155,+,MHC_I,JABR01028479.1_1:1,JABR01028479.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,JABR01028479.1,16914,17193,+,IgC1_MHC_I_alpha3,JABR01028479.1_1:1,JABR01028479.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,JABR01079529.1,4350,4634,-,IgC1_MHC_I_alpha3,ENSRROG00000010104,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,JABR01079529.1,5212,5478,-,MHC_I,ENSRROG00000010104,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,JABR01079529.1,5720,5992,-,MHC_I,ENSRROG00000010104,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,JABR01190330.1,823,1002,+,IgC1_MHC_Ia_HLA-B,JABR01190330.1_1:1,JABR01190330.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,JABR01192759.1,1386,1463,+,IgC1_MHC_Ia_HLA-F,JABR01192759.1_1:1,JABR01192759.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,JABR01194289.1,1309,1449,-,MHC_I,JABR01194289.1_1:1,JABR01194289.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN294796.1,15708,15980,+,MHC_I,ENSRROG00000013350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN294796.1,16221,16487,+,MHC_I,ENSRROG00000013350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN294796.1,28316,28390,+,MHC_I,ENSRROG00000013350,NA,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN294796.1,28395,28577,+,MHC_I,ENSRROG00000013350,NA,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN294796.1,29187,29602,+,IgC1_MHC_Ia_HLA-B,ENSRROG00000013350,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN294796.1,68167,68412,+,MHC_I,KN294796.1_2:1,KN294796.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN294796.1,68966,69295,+,IgC1_MHC_I_alpha3,KN294796.1_2:1,KN294796.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN295382.1,3589,3873,-,IgC1_MHC_I_alpha3,ENSRROG00000031660,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN295382.1,4471,4737,-,MHC_I,ENSRROG00000031660,NA,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN295382.1,4980,5243,-,MHC_I,ENSRROG00000031660,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN295382.1,56719,57041,+,IgC1_MHC_I_alpha3,KN295382.1_2:1,KN295382.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN295624.1,8762,8908,-,IgC1_MHC_I_alpha3,KN295624.1_1:1,KN295624.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN295624.1,10864,11097,-,MHC_I,KN295624.1_1:2,KN295624.1_1:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN295624.1,50811,51098,-,IgC1_MHC_I_alpha3,ENSRROG00000031916,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN295624.1,51681,51947,-,MHC_I,ENSRROG00000031916,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN295624.1,52184,52462,-,MHC_I,ENSRROG00000031916,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,3848,4114,+,MHC_I,KN296308.1_1:1,KN296308.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,4361,4576,+,MHC_I,KN296308.1_1:1,KN296308.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,5224,5529,+,IgC1_MHC_I_alpha3,KN296308.1_1:1,KN296308.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,17665,17940,+,MHC_I,KN296308.1_1:2,KN296308.1_1:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,20875,21067,-,IgC1_MHC_I_alpha3,KN296308.1_1:3,KN296308.1_1:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,73373,73507,+,MHC_I,ENSRROG00000043186,NA,protein_coding,aa_OG0023815,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,74110,74388,+,IgC1_MHC_I_alpha3,ENSRROG00000043186,NA,protein_coding,aa_OG0023815,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,81005,81169,+,MHC_I,KN296308.1_2:1,KN296308.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,81175,81255,+,MHC_I,KN296308.1_2:1,KN296308.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,81864,82142,+,IgC1_MHC_Ia_HLA-B,KN296308.1_2:1,KN296308.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,119947,120219,+,MHC_I,KN296308.1_2:2,KN296308.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,120466,120732,+,MHC_I,KN296308.1_2:2,KN296308.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,121294,121584,+,IgC1_MHC_I_alpha3,KN296308.1_2:2,KN296308.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,406865,407203,+,MHC_I,ENSRROG00000036835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,407449,407589,+,MHC_I,ENSRROG00000036835,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,407599,407849,+,MHC_I,ENSRROG00000036835,NA,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,408443,408757,+,IgC1_MHC_I_alpha3,ENSRROG00000036835,NA,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,505073,505204,+,IgC1_MHC_Ib_HLA-E,KN296308.1_3:2,KN296308.1_3:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,588363,588625,+,MHC_I,KN296308.1_3:3,KN296308.1_3:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,679104,679361,+,MHC_I,ENSRROG00000043028,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,679608,679922,+,MHC_I,ENSRROG00000043028,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,680497,680871,+,IgC1_MHC_I_alpha3,ENSRROG00000043028,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296308.1,1342809,1343084,-,MHC_I,KN296308.1_4:1,KN296308.1_4:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296308.1,1363952,1364200,+,IgC1_MHC_I_alpha3,KN296308.1_4:2,KN296308.1_4:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296733.1,2164,2448,-,IgC1_MHC_Ia_HLA-B,KN296733.1_1:1,KN296733.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296733.1,3104,3196,-,MHC_I,KN296733.1_1:1,KN296733.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN296733.1,15468,15788,-,IgC1_MHC_I_alpha3,ENSRROG00000029746,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296733.1,16344,16610,-,MHC_I,ENSRROG00000029746,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN296733.1,16849,17121,-,MHC_I,ENSRROG00000029746,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN297029.1,9505,9597,+,MHC_I,KN297029.1_1:1,KN297029.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN297029.1,10277,10561,+,IgC1_MHC_Ia_HLA-B,KN297029.1_1:1,KN297029.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN297109.1,888,1154,-,MHC_I,KN297109.1_1:1,KN297109.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN297760.1,10277,10618,-,IgC1_MHC_I_alpha3,ENSRROG00000011233;ENSRROG00000026444,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,golden.snub.nosed.monkey,KN297760.1,11060,11326,-,MHC_I,ENSRROG00000011233,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298102.1,29981,30253,+,MHC_I,ENSRROG00000028536,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298102.1,30722,30988,+,MHC_I,ENSRROG00000028536,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,351226,351492,+,MHC_I,ENSRROG00000036640,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,351736,352002,+,MHC_I,ENSRROG00000036640,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,352593,352877,+,IgC1_MHC_I_alpha3,ENSRROG00000036640,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,393998,394298,+,IgC1_MHC_I_alpha3,KN298363.1_1:2,KN298363.1_1:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,430572,430826,+,MHC_I,ENSRROG00000036427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,431054,431323,+,MHC_I,ENSRROG00000036427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,431915,432331,+,IgC1_MHC_I_alpha3,ENSRROG00000036427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,487527,487772,+,MHC_I,KN298363.1_2:1,KN298363.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,488704,489055,+,IgC1_MHC_I_alpha3,KN298363.1_2:1,KN298363.1_2:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,509091,509464,-,IgC1_MHC_Ia_HLA-B,KN298363.1_2:2,KN298363.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,509987,510235,-,MHC_I,KN298363.1_2:2,KN298363.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,518132,518410,-,IgC1_MHC_I_alpha3,ENSRROG00000032300,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,519013,519279,-,MHC_I,ENSRROG00000032300,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,519520,519792,-,MHC_I,ENSRROG00000032300,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298363.1,551292,551658,+,MHC_I,KN298363.1_3:1,KN298363.1_3:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,551906,552097,+,MHC_I,KN298363.1_3:1,KN298363.1_3:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,575318,575356,+,MHC_I,KN298363.1_3:2,KN298363.1_3:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,575373,575597,+,MHC_I,KN298363.1_3:2,KN298363.1_3:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,575821,576087,+,MHC_I,KN298363.1_3:2,KN298363.1_3:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,576693,576971,+,IgC1_MHC_Ia_HLA-G,KN298363.1_3:2,KN298363.1_3:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,605689,605943,+,MHC_I,KN298363.1_3:3,KN298363.1_3:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,606649,606939,+,IgC1_MHC_I_alpha3,KN298363.1_3:3,KN298363.1_3:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,614130,614201,+,MHC_I,KN298363.1_3:4,KN298363.1_3:4,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,614349,614619,+,IgC1_MHC_I_alpha3,KN298363.1_3:4,KN298363.1_3:4,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,629859,629924,+,MHC_I,KN298363.1_3:5,KN298363.1_3:5,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,629930,629992,+,MHC_I,KN298363.1_3:5,KN298363.1_3:5,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298363.1,630685,630976,+,IgC1_MHC_I_alpha3,KN298363.1_3:5,KN298363.1_3:5,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,KN298431.1,22742,23014,+,MHC_I,ENSRROG00000024659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298431.1,23258,23523,+,MHC_I,ENSRROG00000024659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298431.1,24070,24348,+,IgC1_MHC_I_alpha3,ENSRROG00000024659,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298431.1,73967,74269,+,MHC_I,ENSRROG00000003090,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298431.1,74495,74761,+,MHC_I,ENSRROG00000003090,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298431.1,75322,75600,+,IgC1_MHC_I_alpha3,ENSRROG00000003090,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298619.1,713,745,+,MHC_I,ENSRROG00000022057,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298619.1,747,986,+,MHC_I,ENSRROG00000022057,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298619.1,1236,1499,+,MHC_I,ENSRROG00000022057,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,KN298619.1,2036,2362,+,IgC1_MHC_Ia_HLA-G,ENSRROG00000022057,NA,protein_coding,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22882057,22882323,+,MHC_I,NC_044552.1_1:1,NC_044552.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22882567,22882833,+,MHC_I,NC_044552.1_1:1,NC_044552.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22883424,22883708,+,IgC1_MHC_I_alpha3,NC_044552.1_1:1,NC_044552.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22925254,22925499,+,MHC_I,NC_044552.1_1:2,NC_044552.1_1:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22926186,22926410,+,IgC1_MHC_I_alpha3,NC_044552.1_1:2,NC_044552.1_1:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22947400,22947773,-,IgC1_MHC_Ia_HLA-B,104676781,LOC104676781,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22948299,22948547,-,MHC_I,104676781,LOC104676781,ncRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22956445,22956723,-,IgC1_MHC_I_alpha3,104678084,LOC104678084,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22957327,22957593,-,MHC_I,104678084,LOC104678084,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22957834,22958106,-,MHC_I,104678084,LOC104678084,misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22988603,22988869,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,22989117,22989308,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23012475,23012513,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23012530,23012754,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23012978,23013244,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23013853,23014131,+,IgC1_MHC_Ia_HLA-G,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23042907,23043161,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23043867,23044157,+,IgC1_MHC_I_alpha3,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23051324,23051395,+,MHC_I,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23051543,23051813,+,IgC1_MHC_I_alpha3,104676776,LOC104676776,pseudogene,aa_OG0023094,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23067957,23068022,+,MHC_I,104676783,LOC104676783,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23068028,23068090,+,MHC_I,104676783,LOC104676783,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23068783,23069074,+,IgC1_MHC_I_alpha3,104676783,LOC104676783,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23113825,23114091,+,MHC_I,115896795,LOC115896795,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23114338,23114553,+,MHC_I,115896795,LOC115896795,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23115201,23115506,+,IgC1_MHC_I_alpha3,115896795,LOC115896795,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23127628,23127723,+,MHC_I,NC_044552.1_2:2,NC_044552.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23127731,23127817,+,MHC_I,NC_044552.1_2:2,NC_044552.1_2:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23130839,23131031,-,IgC1_MHC_I_alpha3,NC_044552.1_2:3,NC_044552.1_2:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23182987,23183259,+,MHC_I,104668434,LOC104668434,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23183500,23183766,+,MHC_I,104668434,LOC104668434,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23184364,23184642,+,IgC1_MHC_I_alpha3,104668434,LOC104668434,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23190203,23190277,+,MHC_I,NC_044552.1_3:1,NC_044552.1_3:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23190282,23190368,+,MHC_I,NC_044552.1_3:1,NC_044552.1_3:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23191056,23191325,+,IgC1_MHC_Ia_HLA-B,NC_044552.1_3:1,NC_044552.1_3:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23229020,23229292,+,MHC_I,104666177,LOC104666177,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23229539,23229805,+,MHC_I,104666177,LOC104666177,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23230367,23230657,+,IgC1_MHC_I_alpha3,104666177,LOC104666177,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23495762,23496001,+,MHC_I,115896905,LOC115896905,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23496262,23496516,+,MHC_I,115896905,LOC115896905,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23509109,23509447,+,MHC_I,104666164,LOC104666164,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23509693,23509964,+,MHC_I,104666164,LOC104666164,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23510558,23510872,+,IgC1_MHC_Ia_HLA-B,104666164,LOC104666164,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23605651,23605782,+,IgC1_MHC_Ib_HLA-E,NC_044552.1_5:1,NC_044552.1_5:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23691335,23691597,+,MHC_I,NC_044552.1_5:2,NC_044552.1_5:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23783353,23783610,+,MHC_I,NC_044552.1_5:3,NC_044552.1_5:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23783857,23784171,+,MHC_I,NC_044552.1_5:3,NC_044552.1_5:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,23784746,23785120,+,IgC1_MHC_I_alpha3,NC_044552.1_5:3,NC_044552.1_5:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24523272,24523551,-,IgC1_MHC_I_alpha3,NC_044552.1_5:4,NC_044552.1_5:4,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24525370,24525612,-,MHC_I,NC_044552.1_5:5,NC_044552.1_5:5,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24566611,24566898,-,IgC1_MHC_I_alpha3,104662919,LOC104662919,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24567481,24567747,-,MHC_I,104662919,LOC104662919,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24567984,24568262,-,MHC_I,104662919,LOC104662919,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24686543,24686821,-,IgC1_MHC_I_alpha3,104670209,LOC104670209,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24687405,24687671,-,MHC_I,104670209,LOC104670209,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24687918,24688190,-,MHC_I,104670209,LOC104670209,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24767407,24767691,-,IgC1_MHC_I_alpha3,104674706,LOC104674706,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24768273,24768539,-,MHC_I,104674706,LOC104674706,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24768789,24769061,-,MHC_I,104674706,LOC104674706,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24847424,24847717,-,IgC1_MHC_I_alpha3,104667934,LOC104667934,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24848299,24848565,-,MHC_I,104667934,LOC104667934,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24848820,24849092,-,MHC_I,104667934,LOC104667934,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24858344,24858622,-,IgC1_MHC_I_alpha3,104668193,LOC104668193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24859204,24859470,-,MHC_I,104668193,LOC104668193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24859713,24859985,-,MHC_I,104668193,LOC104668193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24877510,24877797,-,IgC1_MHC_I_alpha3,115897009,LOC115897009,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24878377,24878655,-,MHC_I,115897009,LOC115897009,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24878898,24879170,-,MHC_I,115897009,LOC115897009,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24925081,24925365,-,IgC1_MHC_I_alpha3,104661905,LOC104661905,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24925963,24926229,-,MHC_I,104661905,LOC104661905,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,24926472,24926735,-,MHC_I,104661905,LOC104661905,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,25071721,25071873,+,IgC1_MHC_I_alpha3,NC_044552.1_6:1,NC_044552.1_6:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,26431675,26431779,+,IgC1_MHC_Ib_HLA-Cw3-4,NC_044552.1_6:2,NC_044552.1_6:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39552464,39552742,-,IgC1_MHC_I_alpha3,104677653,LOC104677653,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39553323,39553589,-,MHC_I,104677653,LOC104677653,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39553832,39554107,-,MHC_I,104677653,LOC104677653,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39625671,39625949,-,IgC1_MHC_I_alpha3,104663249,LOC104663249,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39626531,39626794,-,MHC_I,104663249,LOC104663249,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39627038,39627310,-,MHC_I,104663249,LOC104663249,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39644889,39645176,-,IgC1_MHC_I_alpha3,104673193,LOC104673193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39645758,39646024,-,MHC_I,104673193,LOC104673193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39646273,39646677,-,MHC_I,104673193,LOC104673193,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39664067,39664378,-,MHC_I,NC_044552.1_7:1,NC_044552.1_7:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39689276,39689575,-,IgC1_MHC_I_alpha3,104677089,LOC104677089,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39690135,39690401,-,MHC_I,104677089,LOC104677089,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39690627,39690941,-,MHC_I,104677089,LOC104677089,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39743057,39743341,-,IgC1_MHC_I_alpha3,104676774,LOC104676774,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39743901,39744194,-,MHC_I,104676774,LOC104676774,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39744436,39744708,-,MHC_I,104676774,LOC104676774,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39763730,39764008,-,IgC1_MHC_I_alpha3,104677087,LOC104677087,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39764555,39764821,-,MHC_I,104677087,LOC104677087,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39765065,39765337,-,MHC_I,104677087,LOC104677087,pseudogene,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39790269,39790553,-,IgC1_MHC_I_alpha3,115896825,LOC115896825,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39791135,39791401,-,MHC_I,115896825,LOC115896825,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,39791645,39791917,-,MHC_I,115896825,LOC115896825,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NC_044552.1,65061544,65061849,+,IgC1_MHC_I_alpha3,NC_044552.1_8:1,NC_044552.1_8:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,65080924,65081190,+,MHC_I,NC_044552.1_8:2,NC_044552.1_8:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,65081399,65081653,+,MHC_I,NC_044552.1_8:2,NC_044552.1_8:2,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,65082762,65083058,+,IgC1_MHC_Ib_HLA-H,NC_044552.1_8:3,NC_044552.1_8:3,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,106825687,106825944,-,MHC_I,NC_044552.1_8:4,NC_044552.1_8:4,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,106925820,106926026,+,MHC_I,NC_044552.1_8:5,NC_044552.1_8:5,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,106944172,106944348,+,MHC_I,NC_044552.1_8:6,NC_044552.1_8:6,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,178406967,178407230,+,MHC_I,NC_044552.1_8:7,NC_044552.1_8:7,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,178446905,178447111,+,MHC_I,NC_044552.1_8:8,NC_044552.1_8:8,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,178462248,178462511,+,MHC_I,NC_044552.1_8:9,NC_044552.1_8:9,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,178498048,178498320,-,MHC_I,NC_044552.1_8:10,NC_044552.1_8:10,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NC_044552.1,178703283,178703417,-,MHC_I,NC_044552.1_8:11,NC_044552.1_8:11,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,8672,9451,+,MHC_I,104678248,LOC104678248,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,10036,10323,+,IgC1_MHC_I_alpha3,104678248,LOC104678248,mRNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,35830,36123,+,MHC_I,NW_022144299.1_1:1,NW_022144299.1_1:1,NA,NA,FALSE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,53709,53975,+,MHC_I,104668824,LOC104668824,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,54224,54488,+,MHC_I,104668824,LOC104668824,misc_RNA,aa_OG0000000,TRUE
MHCI,golden.snub.nosed.monkey,NW_022144299.1,55063,55347,+,IgC1_MHC_I_alpha3,104668824,LOC104668824,misc_RNA,aa_OG0000000,TRUE
MHCI,orangutan,3,44316366,44316575,+,IgC1_MHC_Ia_HLA-B,3_1:1,3_1:1,NA,NA,FALSE
MHCI,orangutan,6,27167519,27167881,+,IgC1_MHC_Ia_HLA-F,6_1:1,6_1:1,NA,NA,FALSE
MHCI,orangutan,6,30687318,30687575,+,MHC_I,ENSPPYG00000016398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30687818,30688084,+,MHC_I,ENSPPYG00000016398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30688678,30688962,+,IgC1_MHC_I_alpha3,ENSPPYG00000016398,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30775200,30775466,+,MHC_I,6_2:2,6_2:2,NA,NA,FALSE
MHCI,orangutan,6,30775713,30775904,+,MHC_I,6_2:2,6_2:2,NA,NA,FALSE
MHCI,orangutan,6,30876012,30876191,+,MHC_I,6_2:3,6_2:3,NA,NA,FALSE
MHCI,orangutan,6,30877717,30877989,+,MHC_I,6_2:4,6_2:4,NA,NA,FALSE
MHCI,orangutan,6,30887411,30887581,+,MHC_I,ENSPPYG00000016402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30887583,30887672,+,MHC_I,ENSPPYG00000016402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30887911,30888186,+,MHC_I,ENSPPYG00000016402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,30888778,30889065,+,IgC1_MHC_I_alpha3,ENSPPYG00000016402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31019203,31019373,+,IgC1_MHC_Ib_HLA-E,6_3:2,6_3:2,NA,NA,FALSE
MHCI,orangutan,6,31123403,31123663,+,MHC_I,6_3:3,6_3:3,NA,NA,FALSE
MHCI,orangutan,6,31199592,31199864,+,MHC_I,ENSPPYG00000016407,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31200106,31200378,+,MHC_I,ENSPPYG00000016407,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31200991,31201284,+,IgC1_MHC_I_alpha3,ENSPPYG00000016407,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31799227,31799541,-,IgC1_MHC_I_alpha3,6_4:1,6_4:1,NA,NA,FALSE
MHCI,orangutan,6,31838373,31838563,-,IgC1_MHC_I_alpha3,ENSPPYG00000016427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31839294,31839569,-,MHC_I,ENSPPYG00000016427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,31839820,31840092,-,MHC_I,ENSPPYG00000016427,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6,32013120,32013442,+,IgC1_MHC_I_alpha3,6_5:1,6_5:1,NA,NA,FALSE
MHCI,orangutan,6,153056583,153056798,+,MHC_I,6_5:2,6_5:2,NA,NA,FALSE
MHCI,orangutan,6,153129311,153129424,+,MHC_I,6_5:3,6_5:3,NA,NA,FALSE
MHCI,orangutan,6,153143143,153143256,+,MHC_I,6_5:4,6_5:4,NA,NA,FALSE
MHCI,orangutan,6,153165415,153165543,-,MHC_I,6_5:5,6_5:5,NA,NA,FALSE
MHCI,orangutan,6_random,723828,724088,+,MHC_I,6_random_1:1,6_random_1:1,NA,NA,FALSE
MHCI,orangutan,6_random,2026494,2026700,+,MHC_I,6_random_1:2,6_random_1:2,NA,NA,FALSE
MHCI,orangutan,6_random,2284231,2284377,-,IgC1_MHC_Ia_HLA-B,ENSPPYG00000017256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,2284981,2285247,-,MHC_I,ENSPPYG00000017256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,2285493,2285765,-,MHC_I,ENSPPYG00000017256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,3977554,3977778,-,MHC_I,ENSPPYG00000017260,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,7546328,7546600,+,MHC_I,ENSPPYG00000025931,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,7546847,7547122,+,MHC_I,ENSPPYG00000025931,NA,protein_coding,aa_OG0000000,TRUE
MHCI,orangutan,6_random,7547689,7547979,+,IgC1_MHC_I_alpha3,ENSPPYG00000025931,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,26694086,26694415,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,gorilla,6,30354728,30354985,+,MHC_I,6_1:2,6_1:2,NA,NA,FALSE
MHCI,gorilla,6,30414627,30414890,+,MHC_I,ENSGGOG00000037193,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30415132,30415377,+,MHC_I,ENSGGOG00000037193,NA,NA,NA,FALSE
MHCI,gorilla,6,30422435,30422589,+,MHC_I,6_2:2,6_2:2,NA,NA,FALSE
MHCI,gorilla,6,30423265,30423564,+,IgC1_MHC_Ia_HLA-B,6_2:3,6_2:3,NA,NA,FALSE
MHCI,gorilla,6,30463760,30464014,+,MHC_I,ENSGGOG00000008012,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30464244,30464510,+,MHC_I,ENSGGOG00000008012,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30465113,30465400,+,IgC1_MHC_Ia_HLA-G,ENSGGOG00000008012,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30528978,30529271,+,MHC_I,6_3:1,6_3:1,NA,NA,FALSE
MHCI,gorilla,6,30532375,30532635,+,MHC_I,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30532875,30533141,+,MHC_I,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30533733,30534011,+,IgC1_MHC_I_alpha3,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30540857,30541150,+,IgC1_MHC_Ib_HLA-Cw3-4,101152997,LOC101152997,pseudogene,aa_OG0004584,TRUE
MHCI,gorilla,6,30575236,30575541,+,MHC_I,6_4:1,6_4:1,NA,NA,FALSE
MHCI,gorilla,6,30576105,30576413,+,IgC1_MHC_I_alpha3,6_4:1,6_4:1,NA,NA,FALSE
MHCI,gorilla,6,30582164,30582349,+,MHC_I,6_4:2,6_4:2,NA,NA,FALSE
MHCI,gorilla,6,30591120,30591380,+,MHC_I,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30591619,30591894,+,MHC_I,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30592089,30592364,+,MHC_I,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30592997,30593296,+,IgC1_MHC_I_alpha3,ENSGGOG00000005772,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30612841,30613164,+,MHC_I,6_5:1,6_5:1,NA,NA,FALSE
MHCI,gorilla,6,30613583,30613834,+,MHC_I,6_5:1,6_5:1,NA,NA,FALSE
MHCI,gorilla,6,30614370,30614729,+,IgC1_MHC_Ia_HLA-B,6_5:1,6_5:1,NA,NA,FALSE
MHCI,gorilla,6,30678896,30679156,+,MHC_I,ENSGGOG00000038876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30679408,30679569,+,MHC_I,ENSGGOG00000038876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30679571,30679669,+,MHC_I,ENSGGOG00000038876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30680240,30680548,+,IgC1_MHC_I_alpha3,ENSGGOG00000038876,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,30958016,30958288,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,gorilla,6,30958532,30958579,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,gorilla,6,30958594,30958791,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,gorilla,6,30959393,30959671,+,IgC1_MHC_I_alpha3,6_6:1,6_6:1,NA,NA,FALSE
MHCI,gorilla,6,31050522,31050749,+,IgC1_MHC_Ib_HLA-E,6_6:2,6_6:2,NA,NA,FALSE
MHCI,gorilla,6,31151547,31151807,+,MHC_I,ENSGGOG00000012802,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,31152010,31152366,+,MHC_I,ENSGGOG00000012802,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,31152943,31153227,+,IgC1_MHC_I_alpha3,ENSGGOG00000012802,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,31838956,31839195,-,MHC_I,6_7:1,6_7:1,NA,NA,FALSE
MHCI,gorilla,6,31840979,31841254,-,MHC_I,6_7:2,6_7:2,NA,NA,FALSE
MHCI,gorilla,6,32028104,32028391,-,IgC1_MHC_I_alpha3,ENSGGOG00000006624;101147118,NA;LOC101147118,protein_coding;mRNA,aa_OG0000000;aa_OG0001144,TRUE
MHCI,gorilla,6,32028977,32029243,-,MHC_I,ENSGGOG00000006624;101147118,NA;LOC101147118,protein_coding;mRNA,aa_OG0000000;aa_OG0001144,TRUE
MHCI,gorilla,6,32029487,32029747,-,MHC_I,ENSGGOG00000006624;101147118,NA;LOC101147118,protein_coding;mRNA,aa_OG0000000;aa_OG0001144,TRUE
MHCI,gorilla,6,32035874,32036158,-,IgC1_MHC_I_alpha3,ENSGGOG00000006624;ENSGGOG00000040817,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,gorilla,6,32036732,32036998,-,MHC_I,ENSGGOG00000006624,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,32037242,32037502,-,MHC_I,ENSGGOG00000006624,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gorilla,6,32121355,32121650,+,IgC1_MHC_I_alpha3,6_8:1,6_8:1,NA,NA,FALSE
MHCI,gorilla,6,33561607,33561711,+,IgC1_MHC_Ib_HLA-Cw3-4,6_8:2,6_8:2,NA,NA,FALSE
MHCI,gorilla,7,76787575,76787841,+,MHC_I,7_1:1,7_1:1,NA,NA,FALSE
MHCI,gorilla,CABD030156219.1,1280,1534,+,MHC_I,CABD030156219.1_1:1,CABD030156219.1_1:1,NA,NA,FALSE
MHCI,gorilla,NW_022153938.1,2842,3102,+,MHC_I,115933301,LOC115933301,pseudogene,aa_OG0000000,TRUE
MHCI,gorilla,NW_022153938.1,3342,3614,+,MHC_I,115933301,LOC115933301,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,26565198,26565560,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,bonobo,6,30182579,30182836,+,MHC_I,ENSPPAG00000028356,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30183080,30183346,+,MHC_I,ENSPPAG00000028356,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30183935,30184243,+,IgC1_MHC_I_alpha3,ENSPPAG00000028356,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30251415,30251681,+,MHC_I,ENSPPAG00000038818;100993452,NA;LOC100993452,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30251921,30252166,+,MHC_I,100993452,LOC100993452,mRNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30259223,30259351,+,MHC_I,6_3:1,6_3:1,NA,NA,FALSE
MHCI,bonobo,6,30260027,30260326,+,IgC1_MHC_Ia_HLA-B,100993452,LOC100993452,mRNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30286801,30287067,+,MHC_I,ENSPPAG00000031248,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30287296,30287562,+,MHC_I,ENSPPAG00000031248,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30288165,30288452,+,IgC1_MHC_Ia_HLA-G,ENSPPAG00000031248,HLA-G,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30333935,30334192,+,MHC_I,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30334435,30334701,+,MHC_I,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30335285,30335569,+,IgC1_MHC_I_alpha3,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30342452,30342745,+,IgC1_MHC_Ib_HLA-Cw3-4,6_4:1,6_4:1,NA,NA,FALSE
MHCI,bonobo,6,30372234,30372545,+,MHC_I,100994473,LOC100994473,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,30372791,30373024,+,MHC_I,100994473,LOC100994473,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,30373668,30373969,+,IgC1_MHC_I_alpha3,100994473,LOC100994473,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,30379751,30379936,+,MHC_I,6_5:1,6_5:1,NA,NA,FALSE
MHCI,bonobo,6,30388356,30388616,+,MHC_I,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30388850,30389125,+,MHC_I,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30389696,30389980,+,IgC1_MHC_I_alpha3,ENSPPAG00000033438,Papa-A,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,30402182,30402433,+,MHC_I,100994810,LOC100994810,misc_RNA,rna_OG0035915,TRUE
MHCI,bonobo,6,30403022,30403306,+,IgC1_MHC_Ia_HLA-B,100994810,LOC100994810,misc_RNA,rna_OG0035915,TRUE
MHCI,bonobo,6,30451920,30452180,+,MHC_I,ENSPPAG00000033792;100979683,NA;LOC100979683,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30452415,30452591,+,MHC_I,ENSPPAG00000033792;100979683,NA;LOC100979683,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30452593,30452691,+,MHC_I,ENSPPAG00000033792;100979683,NA;LOC100979683,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30453235,30453575,+,IgC1_MHC_I_alpha3,ENSPPAG00000033792;100979683,NA;LOC100979683,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,bonobo,6,30908295,30908567,+,MHC_I,100983015,LOC100983015,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,30908817,30909078,+,MHC_I,100983015,LOC100983015,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,30909680,30909958,+,IgC1_MHC_I_alpha3,100983015,LOC100983015,pseudogene,aa_OG0000000,TRUE
MHCI,bonobo,6,31000222,31000455,+,IgC1_MHC_Ia_HLA-B,6_6:1,6_6:1,NA,NA,FALSE
MHCI,bonobo,6,31104517,31104777,+,MHC_I,ENSPPAG00000038211,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31104980,31105336,+,MHC_I,ENSPPAG00000038211,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31105913,31106197,+,IgC1_MHC_I_alpha3,ENSPPAG00000038211,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31787623,31787856,-,MHC_I,6_7:1,6_7:1,NA,NA,FALSE
MHCI,bonobo,6,31912235,31912528,-,IgC1_MHC_I_alpha3,ENSPPAG00000006130,HLA-C,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31913122,31913388,-,MHC_I,ENSPPAG00000006130,HLA-C,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31913631,31913891,-,MHC_I,ENSPPAG00000006130,HLA-C,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31950848,31951024,-,MHC_I,6_8:1,6_8:1,NA,NA,FALSE
MHCI,bonobo,6,31998227,31998505,-,IgC1_MHC_I_alpha3,ENSPPAG00000029716,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31999086,31999352,-,MHC_I,ENSPPAG00000029716,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,31999595,31999855,-,MHC_I,ENSPPAG00000029716,NA,protein_coding,aa_OG0000000,TRUE
MHCI,bonobo,6,32066925,32067220,+,IgC1_MHC_I_alpha3,6_9:1,6_9:1,NA,NA,FALSE
MHCI,bonobo,6,33581340,33581444,+,IgC1_MHC_Ib_HLA-Cw3-4,6_9:2,6_9:2,NA,NA,FALSE
MHCI,chimpanzee,6,26438143,26438505,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,chimpanzee,6,29948896,29949153,+,MHC_I,ENSPTRG00000017910,PATR-F,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,29949396,29949662,+,MHC_I,ENSPTRG00000017910,PATR-F,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,29950245,29950529,+,IgC1_MHC_I_alpha3,ENSPTRG00000017910,PATR-F,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30020732,30020998,+,MHC_I,ENSPTRG00000043460,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30021238,30021483,+,MHC_I,ENSPTRG00000043460,NA,NA,NA,FALSE
MHCI,chimpanzee,6,30028574,30028702,+,MHC_I,6_3:2,6_3:2,NA,NA,FALSE
MHCI,chimpanzee,6,30029378,30029677,+,IgC1_MHC_Ia_HLA-B,6_3:3,6_3:3,NA,NA,FALSE
MHCI,chimpanzee,6,30056156,30056422,+,MHC_I,ENSPTRG00000017908;VGNC:VGNC:11027,PATR-G;ABCF1,protein_coding,aa_OG0000000;aa_OG0007928,TRUE
MHCI,chimpanzee,6,30056651,30056917,+,MHC_I,ENSPTRG00000017908;VGNC:VGNC:11027,PATR-G;ABCF1,protein_coding,aa_OG0000000;aa_OG0007928,TRUE
MHCI,chimpanzee,6,30057520,30057807,+,IgC1_MHC_Ia_HLA-G,ENSPTRG00000017908;VGNC:VGNC:11027,PATR-G;ABCF1,protein_coding,aa_OG0000000;aa_OG0007928,TRUE
MHCI,chimpanzee,6,30103262,30103519,+,MHC_I,ENSPTRG00000017906;VGNC:VGNC:51992,PATR-H;ATAT1,protein_coding,aa_OG0000000;aa_OG0001580,TRUE
MHCI,chimpanzee,6,30103762,30104028,+,MHC_I,ENSPTRG00000017906;VGNC:VGNC:51992,PATR-H;ATAT1,protein_coding,aa_OG0000000;aa_OG0001580,TRUE
MHCI,chimpanzee,6,30104620,30104898,+,IgC1_MHC_I_alpha3,ENSPTRG00000017906;VGNC:VGNC:51992,PATR-H;ATAT1,protein_coding,aa_OG0000000;aa_OG0001580,TRUE
MHCI,chimpanzee,6,30111766,30112059,+,IgC1_MHC_Ib_HLA-Cw3-4,VGNC:VGNC:51992,ATAT1,protein_coding,aa_OG0001580,TRUE
MHCI,chimpanzee,6,30141591,30141902,+,MHC_I,6_4:1,6_4:1,NA,NA,FALSE
MHCI,chimpanzee,6,30142148,30142381,+,MHC_I,6_4:1,6_4:1,NA,NA,FALSE
MHCI,chimpanzee,6,30142984,30143328,+,IgC1_MHC_I_alpha3,6_4:2,6_4:2,NA,NA,FALSE
MHCI,chimpanzee,6,30149109,30149294,+,MHC_I,6_4:3,6_4:3,NA,NA,FALSE
MHCI,chimpanzee,6,30157729,30157989,+,MHC_I,ENSPTRG00000017912,HLA-A,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30158228,30158503,+,MHC_I,ENSPTRG00000017912,HLA-A,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30159074,30159358,+,IgC1_MHC_I_alpha3,ENSPTRG00000017912,HLA-A,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30171552,30171803,+,MHC_I,6_5:1,6_5:1,NA,NA,FALSE
MHCI,chimpanzee,6,30172392,30172676,+,IgC1_MHC_Ia_HLA-B,6_5:2,6_5:2,NA,NA,FALSE
MHCI,chimpanzee,6,30221736,30221996,+,MHC_I,ENSPTRG00000046552,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30222231,30222407,+,MHC_I,ENSPTRG00000046552,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30222409,30222507,+,MHC_I,ENSPTRG00000046552,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30223051,30223391,+,IgC1_MHC_I_alpha3,ENSPTRG00000046552,NA,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30480629,30480748,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,chimpanzee,6,30480765,30480812,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,chimpanzee,6,30480823,30480894,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,chimpanzee,6,30481049,30481285,+,MHC_I,6_6:1,6_6:1,NA,NA,FALSE
MHCI,chimpanzee,6,30484420,30484692,+,MHC_I,6_6:2,6_6:2,NA,NA,FALSE
MHCI,chimpanzee,6,30484942,30485203,+,MHC_I,6_6:2,6_6:2,NA,NA,FALSE
MHCI,chimpanzee,6,30485805,30486083,+,IgC1_MHC_I_alpha3,6_6:3,6_6:3,NA,NA,FALSE
MHCI,chimpanzee,6,30576204,30576440,+,IgC1_MHC_Ia_HLA-B,6_6:4,6_6:4,NA,NA,FALSE
MHCI,chimpanzee,6,30680534,30680806,+,MHC_I,ENSPTRG00000038986;107975447,PATR-E;LOC107975447,protein_coding;ncRNA,aa_OG0000000;aa_OG0038154,TRUE
MHCI,chimpanzee,6,30681009,30681365,+,MHC_I,ENSPTRG00000038986,PATR-E,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,30681942,30682226,+,IgC1_MHC_I_alpha3,ENSPTRG00000038986,PATR-E,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,31412767,31413000,-,MHC_I,6_7:1,6_7:1,NA,NA,FALSE
MHCI,chimpanzee,6,31414683,31414958,-,MHC_I,6_7:2,6_7:2,NA,NA,FALSE
MHCI,chimpanzee,6,31518692,31518976,-,IgC1_MHC_I_alpha3,ENSPTRG00000041261,PATR-C,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,31519571,31519837,-,MHC_I,ENSPTRG00000041261,PATR-C,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,31520081,31520353,-,MHC_I,ENSPTRG00000041261,PATR-C,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,31557323,31557499,-,MHC_I,6_8:1,6_8:1,NA,NA,FALSE
MHCI,chimpanzee,6,31557505,31557585,-,MHC_I,6_8:1,6_8:1,NA,NA,FALSE
MHCI,chimpanzee,6,31604969,31605247,-,IgC1_MHC_I_alpha3,ENSPTRG00000041261,PATR-C,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,6,31605829,31606095,-,MHC_I,ENSPTRG00000041261;VGNC:VGNC:52011;VGNC:VGNC:11133,PATR-C;GPSM3;NOTCH4,protein_coding,aa_OG0000000;aa_OG0012212;aa_OG0012090,TRUE
MHCI,chimpanzee,6,31606338,31606598,-,MHC_I,ENSPTRG00000041261;VGNC:VGNC:52011;VGNC:VGNC:11133,PATR-C;GPSM3;NOTCH4,protein_coding,aa_OG0000000;aa_OG0012212;aa_OG0012090,TRUE
MHCI,chimpanzee,6,31673956,31674251,+,IgC1_MHC_I_alpha3,6_9:1,6_9:1,NA,NA,FALSE
MHCI,chimpanzee,6,33218927,33219031,+,IgC1_MHC_Ib_HLA-Cw3-4,6_9:2,6_9:2,NA,NA,FALSE
MHCI,chimpanzee,AACZ04009384.1,2323,2475,+,MHC_I,AACZ04009384.1_1:1,AACZ04009384.1_1:1,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,832,1092,-,MHC_I,KV420846.1_1:1,KV420846.1_1:1,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,7360,7545,-,MHC_I,KV420846.1_1:2,KV420846.1_1:2,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,28909,29169,+,MHC_I,KV420846.1_1:3,KV420846.1_1:3,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,29413,29718,+,MHC_I,KV420846.1_1:3,KV420846.1_1:3,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,30285,30572,+,IgC1_MHC_I_alpha3,KV420846.1_1:3,KV420846.1_1:3,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,43721,43972,+,MHC_I,KV420846.1_1:4,KV420846.1_1:4,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,44569,44853,+,IgC1_MHC_Ia_HLA-B,KV420846.1_1:5,KV420846.1_1:5,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,97688,97966,-,IgC1_MHC_I_alpha3,ENSPTRG00000039521,PATR-AL,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,KV420846.1,98542,98817,-,MHC_I,ENSPTRG00000039521,PATR-AL,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,KV420846.1,99044,99304,-,MHC_I,ENSPTRG00000039521,PATR-AL,protein_coding,aa_OG0000000,TRUE
MHCI,chimpanzee,KV420846.1,131423,131713,-,IgC1_MHC_Ia_HLA-B,KV420846.1_2:1,KV420846.1_2:1,NA,NA,FALSE
MHCI,chimpanzee,KV420846.1,132661,132852,-,MHC_I,KV420846.1_2:2,KV420846.1_2:2,NA,NA,FALSE
MHCI,chimpanzee,KV420964.1,524129,524395,+,MHC_I,KV420964.1_1:1,KV420964.1_1:1,NA,NA,FALSE
MHCI,chimpanzee,NW_019937175.1,35647,35907,+,MHC_I,100608371,LOC100608371,pseudogene,aa_OG0000000,TRUE
MHCI,chimpanzee,NW_019937175.1,36151,36456,+,MHC_I,100608371,LOC100608371,pseudogene,aa_OG0000000,TRUE
MHCI,chimpanzee,NW_019937175.1,37023,37319,+,IgC1_MHC_I_alpha3,100608371,LOC100608371,pseudogene,aa_OG0000000,TRUE
MHCI,chimpanzee,NW_019937175.1,50458,50709,+,MHC_I,NW_019937175.1_1:1,NW_019937175.1_1:1,NA,NA,FALSE
MHCI,chimpanzee,NW_019937175.1,51306,51590,+,IgC1_MHC_Ia_HLA-B,NW_019937175.1_1:2,NW_019937175.1_1:2,NA,NA,FALSE
MHCI,chimpanzee,NW_019937175.1,104934,105194,+,MHC_I,NW_019937175.1_1:4,NW_019937175.1_1:4,NA,NA,FALSE
MHCI,chimpanzee,NW_019937175.1,105421,105696,+,MHC_I,NW_019937175.1_1:4,NW_019937175.1_1:4,NA,NA,FALSE
MHCI,chimpanzee,NW_019937175.1,106272,106550,+,IgC1_MHC_I_alpha3,NW_019937175.1_1:4,NW_019937175.1_1:4,NA,NA,FALSE
MHCI,gibbon,1a,74688425,74688697,+,MHC_I,ENSNLEG00000029996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74688941,74689207,+,MHC_I,ENSNLEG00000029996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74689801,74690058,+,IgC1_MHC_I_alpha3,ENSNLEG00000029996,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74723629,74723895,+,MHC_I,ENSNLEG00000028885,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74724481,74724759,+,IgC1_MHC_I_alpha3,ENSNLEG00000028885,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74736894,74737037,+,MHC_I,1a_2:1,1a_2:1,NA,NA,FALSE
MHCI,gibbon,1a,74737042,74737116,+,MHC_I,1a_2:1,1a_2:1,NA,NA,FALSE
MHCI,gibbon,1a,74737133,74737213,+,MHC_I,1a_2:1,1a_2:1,NA,NA,FALSE
MHCI,gibbon,1a,74737808,74738092,+,IgC1_MHC_Ia_HLA-B,1a_2:1,1a_2:1,NA,NA,FALSE
MHCI,gibbon,1a,74830930,74831202,+,MHC_I,ENSNLEG00000004728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74831448,74831714,+,MHC_I,ENSNLEG00000004728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,74832307,74832600,+,IgC1_MHC_I_alpha3,ENSNLEG00000004728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75056974,75057114,-,IgC1_MHC_Ia_HLA-B,1a_3:1,1a_3:1,NA,NA,FALSE
MHCI,gibbon,1a,75057700,75057963,-,MHC_I,1a_3:1,1a_3:1,NA,NA,FALSE
MHCI,gibbon,1a,75058225,75058503,-,MHC_I,1a_3:1,1a_3:1,NA,NA,FALSE
MHCI,gibbon,1a,75067317,75067592,+,MHC_I,ENSNLEG00000005023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75067841,75068103,+,MHC_I,ENSNLEG00000005023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75068700,75068981,+,IgC1_MHC_I_alpha3,ENSNLEG00000005023,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75096673,75096798,-,MHC_I,1a_4:1,1a_4:1,NA,NA,FALSE
MHCI,gibbon,1a,75159673,75159897,+,IgC1_MHC_I_alpha3,1a_4:2,1a_4:2,NA,NA,FALSE
MHCI,gibbon,1a,75282810,75283067,+,MHC_I,ENSNLEG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75283310,75283627,+,MHC_I,ENSNLEG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,75284201,75284488,+,IgC1_MHC_I_alpha3,ENSNLEG00000005053,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76036298,76036564,-,MHC_I,1a_5:1,1a_5:1,NA,NA,FALSE
MHCI,gibbon,1a,76102446,76102622,-,MHC_I,1a_5:2,1a_5:2,NA,NA,FALSE
MHCI,gibbon,1a,76140247,76140540,-,IgC1_MHC_I_alpha3,ENSNLEG00000026781;ENSNLEG00000033965,NA,protein_coding;miRNA,aa_OG0000000;rna_OG0017629,TRUE
MHCI,gibbon,1a,76141122,76141388,-,MHC_I,ENSNLEG00000026781,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76141631,76141837,-,MHC_I,ENSNLEG00000026781,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76141843,76141890,-,MHC_I,ENSNLEG00000026781,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76175405,76175683,-,IgC1_MHC_I_alpha3,ENSNLEG00000005839,HLA-B,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76176265,76176531,-,MHC_I,ENSNLEG00000005839,HLA-B,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76176774,76177034,-,MHC_I,ENSNLEG00000005839,HLA-B,protein_coding,aa_OG0000000,TRUE
MHCI,gibbon,1a,76221084,76221329,-,IgC1_MHC_I_alpha3,1a_6:1,1a_6:1,NA,NA,FALSE
MHCI,gibbon,1a,76221944,76222060,-,MHC_I,1a_6:2,1a_6:2,NA,NA,FALSE
MHCI,gibbon,1a,76235157,76235439,-,IgC1_MHC_I_alpha3,1a_6:3,1a_6:3,NA,NA,FALSE
MHCI,gibbon,1a,76236021,76236287,-,MHC_I,1a_6:3,1a_6:3,NA,NA,FALSE
MHCI,gibbon,1a,76307796,76308091,+,IgC1_MHC_I_alpha3,1a_6:4,1a_6:4,NA,NA,FALSE
MHCI,gibbon,1a,77710060,77710290,+,IgC1_MHC_Ia_HLA-B,1a_6:5,1a_6:5,NA,NA,FALSE
MHCI,gibbon,ADFV01143570.1,3288,3550,-,MHC_I,ADFV01143570.1_1:1,ADFV01143570.1_1:1,NA,NA,FALSE
MHCI,gibbon,ADFV01143570.1,5716,5793,-,MHC_I,ADFV01143570.1_1:2,ADFV01143570.1_1:2,NA,NA,FALSE
MHCI,gibbon,GL399134.1,8528,8731,+,MHC_I,GL399134.1_1:1,GL399134.1_1:1,NA,NA,FALSE
MHCI,gibbon,GL399134.1,9526,9804,+,IgC1_MHC_I_alpha3,GL399134.1_1:2,GL399134.1_1:2,NA,NA,FALSE
MHCI,gibbon,GL401918.2,1826,2092,-,MHC_I,GL401918.2_1:1,GL401918.2_1:1,NA,NA,FALSE
MHCI,gibbon,NW_022096133.1,24904,25182,-,IgC1_MHC_I_alpha3,115833827,LOC115833827,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096133.1,25764,26030,-,MHC_I,115833827,LOC115833827,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096133.1,26273,26534,-,MHC_I,115833827,LOC115833827,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,2253,2699,+,MHC_I,105739027,LOC105739027,pseudogene,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,3264,3551,+,IgC1_MHC_I_alpha3,105739027,LOC105739027,pseudogene,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,35435,35695,+,MHC_I,115833993,LOC115833993,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,35938,36204,+,MHC_I,115833993,LOC115833993,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,36787,37065,+,IgC1_MHC_I_alpha3,115833993,LOC115833993,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,115446,115622,-,MHC_I,NW_022096583.1_1:1,NW_022096583.1_1:1,NA,NA,FALSE
MHCI,gibbon,NW_022096583.1,163080,163358,-,IgC1_MHC_I_alpha3,115833994,LOC115833994,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,163938,164203,-,MHC_I,115833994,LOC115833994,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022096583.1,164445,164705,-,MHC_I,115833994,LOC115833994,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022097413.1,68828,69088,+,MHC_I,115834248,LOC115834248,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022097413.1,69331,69597,+,MHC_I,115834248,LOC115834248,misc_RNA,aa_OG0000000,TRUE
MHCI,gibbon,NW_022097413.1,70179,70472,+,IgC1_MHC_I_alpha3,115834248,LOC115834248,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,ABRT02018022.1,562,828,-,MHC_I,ABRT02018022.1_1:1,ABRT02018022.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02018022.1,2221,2424,-,MHC_I,ABRT02018022.1_1:2,ABRT02018022.1_1:2,NA,NA,FALSE
MHCI,tarsier,ABRT02018263.1,3683,3988,-,MHC_I,ABRT02018263.1_1:1,ABRT02018263.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02018302.1,201,371,-,MHC_I,ABRT02018302.1_1:1,ABRT02018302.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02038005.1,2564,2749,+,MHC_I,ABRT02038005.1_1:1,ABRT02038005.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02060213.1,2010,2195,-,MHC_I,ABRT02060213.1_1:1,ABRT02060213.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02150583.1,137,373,-,MHC_I,ABRT02150583.1_1:1,ABRT02150583.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02207952.1,207,308,-,MHC_I,ABRT02207952.1_1:1,ABRT02207952.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02253046.1,19,156,-,IgC1_MHC_I_alpha3,ABRT02253046.1_1:1,ABRT02253046.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02256077.1,2674,2871,+,MHC_I,ABRT02256077.1_1:1,ABRT02256077.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02270026.1,322,507,-,IgC1_MHC_I_alpha3,ABRT02270026.1_1:1,ABRT02270026.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02307670.1,7841,8146,+,MHC_I,ABRT02307670.1_1:1,ABRT02307670.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02338580.1,937,1140,+,MHC_I,ABRT02338580.1_1:1,ABRT02338580.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02338580.1,2533,2799,+,MHC_I,ABRT02338580.1_1:2,ABRT02338580.1_1:2,NA,NA,FALSE
MHCI,tarsier,ABRT02473005.1,36723,36863,+,MHC_I,ABRT02473005.1_1:1,ABRT02473005.1_1:1,NA,NA,FALSE
MHCI,tarsier,ABRT02473005.1,38241,38507,+,MHC_I,ABRT02473005.1_1:2,ABRT02473005.1_1:2,NA,NA,FALSE
MHCI,tarsier,KE922731.1,6191,6394,+,MHC_I,KE922731.1_1:1,KE922731.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE922731.1,7787,8053,+,MHC_I,KE922731.1_1:2,KE922731.1_1:2,NA,NA,FALSE
MHCI,tarsier,KE923374.1,18570,18755,-,MHC_I,KE923374.1_1:1,KE923374.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE931063.1,15047,15376,-,IgC1_MHC_I_alpha3,103251393,LOC103251393,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE931063.1,15926,16189,-,MHC_I,103251393,LOC103251393,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE931063.1,16645,16908,-,MHC_I,103251393,LOC103251393,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE935397.1,34451,34708,+,MHC_I,KE935397.1_1:1,KE935397.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE936407.1,34360,34458,-,MHC_I,KE936407.1_1:1,KE936407.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE936407.1,38445,38750,-,MHC_I,KE936407.1_1:2,KE936407.1_1:2,NA,NA,FALSE
MHCI,tarsier,KE937527.1,39361,39648,-,IgC1_MHC_I_alpha3,103256935,LOC103256935,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE937527.1,40232,40493,-,MHC_I,103256935,LOC103256935,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE937527.1,40662,40838,-,MHC_I,103256935,LOC103256935,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE939242.1,82396,82675,-,IgC1_MHC_Ia_RT1-Aa,KE939242.1_1:1,KE939242.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE939242.1,83236,83445,-,MHC_I,KE939242.1_1:1,KE939242.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE944024.1,118245,118373,+,MHC_I,ENSTSYG00000031908,NA,NA,NA,FALSE
MHCI,tarsier,KE944024.1,118596,118859,+,MHC_I,ENSTSYG00000031908,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE944024.1,119471,119779,+,IgC1_MHC_I_alpha3,ENSTSYG00000031908,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE944024.1,170562,171338,+,MHC_I,103268465,LOC103268465,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE944024.1,171866,172174,+,IgC1_MHC_I_alpha3,103268465,LOC103268465,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE944812.1,22621,22878,+,IgC1_MHC_I_alpha3,KE944812.1_1:1,KE944812.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE946478.1,44910,45281,-,IgC1_MHC_I_alpha3,ENSTSYG00000035911;103271436,NA;LOC103271436,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE946478.1,45902,46168,-,MHC_I,ENSTSYG00000035911;103271436,NA;LOC103271436,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE946478.1,46331,46645,-,MHC_I,ENSTSYG00000035911;103271436,NA;LOC103271436,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE946823.1,76574,76750,-,IgC1_MHC_Ia_HLA-B,KE946823.1_1:1,KE946823.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE947559.1,32492,32614,-,MHC_I,KE947559.1_1:1,KE947559.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE947559.1,32998,33141,-,MHC_I,KE947559.1_1:1,KE947559.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE947559.1,61346,61623,-,IgC1_MHC_I_alpha3,103272611,LOC103272611,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE947559.1,62194,62475,-,MHC_I,103272611,LOC103272611,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,162895,163164,+,IgC1_MHC_I_alpha3,KE948585.1_1:1,KE948585.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE948585.1,176998,177330,-,IgC1_MHC_I_alpha3,ENSTSYG00000026224,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,177873,178139,-,MHC_I,ENSTSYG00000026224,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,178378,178650,-,MHC_I,ENSTSYG00000026224,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,231565,231702,+,IgC1_MHC_I_alpha3,KE948585.1_2:1,KE948585.1_2:1,NA,NA,FALSE
MHCI,tarsier,KE948585.1,239428,239751,-,IgC1_MHC_I_alpha3,ENSTSYG00000030084;103273536,NA;LOC103273536,protein_coding;mRNA,aa_OG0018025;aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,240303,240614,-,MHC_I,103273536,LOC103273536,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE948585.1,240836,241093,-,MHC_I,103273536,LOC103273536,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949299.1,441491,441820,-,IgC1_MHC_I_alpha3,103274820,LOC103274820,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE949299.1,442360,442506,-,MHC_I,103274820,LOC103274820,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE949299.1,442511,442597,-,MHC_I,103274820,LOC103274820,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE949299.1,442879,442998,-,MHC_I,103274820,LOC103274820,NA,NA,FALSE
MHCI,tarsier,KE949691.1,71088,71438,-,IgC1_MHC_I_alpha3,103275158,LOC103275158,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,135457,135668,+,MHC_I,103275154,LOC103275154,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,135674,135724,+,MHC_I,103275154,LOC103275154,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,135964,136231,+,MHC_I,103275154,LOC103275154,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,136832,137173,+,IgC1_MHC_I_alpha3,103275154,LOC103275154,misc_RNA,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,191162,191434,+,MHC_I,ENSTSYG00000032676,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,191655,191921,+,MHC_I,ENSTSYG00000032676,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE949691.1,192513,192842,+,IgC1_MHC_I_alpha3,ENSTSYG00000032676,NA,protein_coding,aa_OG0000000,TRUE
MHCI,tarsier,KE950402.1,108055,108246,-,MHC_I,KE950402.1_1:1,KE950402.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE950402.1,114088,114360,-,MHC_I,KE950402.1_1:2,KE950402.1_1:2,NA,NA,FALSE
MHCI,tarsier,KE950642.1,40293,40553,-,MHC_I,KE950642.1_1:1,KE950642.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE950642.1,91595,91879,+,MHC_I,103276998,LOC103276998,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE950642.1,92120,92425,+,MHC_I,103276998,LOC103276998,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE950642.1,92935,93342,+,IgC1_MHC_I_alpha3,103276998,LOC103276998,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE950642.1,98356,98493,-,IgC1_MHC_I_alpha3,KE950642.1_2:1,KE950642.1_2:1,NA,NA,FALSE
MHCI,tarsier,KE950660.1,43358,43625,-,IgC1_MHC_I_alpha3,103277079,LOC103277079,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,44197,44413,-,MHC_I,103277079,LOC103277079,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,44693,44953,-,MHC_I,103277079,LOC103277079,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,63344,63481,+,IgC1_MHC_I_alpha3,KE950660.1_1:1,KE950660.1_1:1,NA,NA,FALSE
MHCI,tarsier,KE950660.1,71177,71287,-,IgC1_MHC_I_alpha3,KE950660.1_1:2,KE950660.1_1:2,NA,NA,FALSE
MHCI,tarsier,KE950660.1,72752,73009,-,MHC_I,103277080,LOC103277080,mRNA,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,210036,210314,-,IgC1_MHC_I_alpha3,103277082,LOC103277082,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,210825,211078,-,MHC_I,103277082,LOC103277082,pseudogene,aa_OG0000000,TRUE
MHCI,tarsier,KE950660.1,211250,211351,-,MHC_I,103277082,LOC103277082,pseudogene,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_1253,173770,174090,+,MHC_I,GeneScaffold_1253_1:1,GeneScaffold_1253_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_1253,204572,204790,+,IgC1_MHC_Ia_HLA-B,GeneScaffold_1253_1:2,GeneScaffold_1253_1:2,NA,NA,FALSE
MHCI,pika,GeneScaffold_3685,278085,278222,+,IgC1_MHC_Ib_HLA-H,GeneScaffold_3685_1:1,GeneScaffold_3685_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_4878,7694,7978,-,MHC_I,GeneScaffold_4878_1:1,GeneScaffold_4878_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,242122,242439,-,IgC1_MHC_I_alpha3,ENSOPRG00000001599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,242943,243206,-,MHC_I,ENSOPRG00000001599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,243443,243751,-,MHC_I,ENSOPRG00000001599,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,256871,257158,+,MHC_I,GeneScaffold_5137_1:1,GeneScaffold_5137_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,257371,257571,+,MHC_I,GeneScaffold_5137_1:1,GeneScaffold_5137_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,258243,258491,+,IgC1_MHC_I_alpha3,GeneScaffold_5137_1:1,GeneScaffold_5137_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,276056,276339,+,MHC_I,ENSOPRG00000018198,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,276533,276805,+,MHC_I,ENSOPRG00000018198,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,277395,277697,+,IgC1_MHC_I_alpha3,ENSOPRG00000018198,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,298628,298912,+,MHC_I,GeneScaffold_5137_2:1,GeneScaffold_5137_2:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,299128,299409,+,MHC_I,GeneScaffold_5137_2:1,GeneScaffold_5137_2:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,299944,300282,+,IgC1_MHC_I_alpha3,GeneScaffold_5137_2:1,GeneScaffold_5137_2:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,315286,315606,+,MHC_I,ENSOPRG00000011879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,315787,316053,+,MHC_I,ENSOPRG00000011879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,316645,317004,+,IgC1_MHC_I_alpha3,ENSOPRG00000011879,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5137,344836,345171,+,MHC_I,GeneScaffold_5137_3:1,GeneScaffold_5137_3:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5137,345391,345456,+,MHC_I,GeneScaffold_5137_3:1,GeneScaffold_5137_3:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5346,5295,5687,-,IgC1_MHC_I_alpha3,ENSOPRG00000004578,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5346,7703,7936,-,MHC_I,ENSOPRG00000004578,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,GeneScaffold_5346,31019,31294,-,MHC_I,ENSOPRG00000004593,NA,protein_coding,aa_OG0038679,TRUE
MHCI,pika,GeneScaffold_5346,31510,31833,-,MHC_I,ENSOPRG00000004593,NA,protein_coding,aa_OG0038679,TRUE
MHCI,pika,GeneScaffold_5440,90147,90413,-,MHC_I,GeneScaffold_5440_1:1,GeneScaffold_5440_1:1,NA,NA,FALSE
MHCI,pika,GeneScaffold_5440,91394,91687,-,MHC_I,GeneScaffold_5440_1:1,GeneScaffold_5440_1:1,NA,NA,FALSE
MHCI,pika,NW_004535459.1,5618207,5618476,+,MHC_I,101531661,LOC101531661,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535459.1,5619482,5619748,+,MHC_I,101531661,LOC101531661,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535459.1,5621834,5622130,+,IgC1_MHC_I_alpha3,101531661,LOC101531661,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,11941,12075,-,IgC1_MHC_Ia_HLA-F,101533457,LOC101533457,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,12642,12914,-,MHC_I,101533457,LOC101533457,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,13142,13426,-,MHC_I,101533457,LOC101533457,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,65286,65651,-,IgC1_MHC_I_alpha3,101525155,LOC101525155,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,66155,66418,-,MHC_I,101525155,LOC101525155,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,66637,66960,-,MHC_I,101525155,LOC101525155,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,75581,75871,-,IgC1_MHC_I_alpha3,101533688,LOC101533688,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,76380,76652,-,MHC_I,101533688,LOC101533688,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,76830,77102,-,MHC_I,101533688,LOC101533688,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,96551,96886,-,IgC1_MHC_I_alpha3,NW_004535552.1_1:1,NW_004535552.1_1:1,NA,NA,FALSE
MHCI,pika,NW_004535552.1,97444,97710,-,MHC_I,NW_004535552.1_1:1,NW_004535552.1_1:1,NA,NA,FALSE
MHCI,pika,NW_004535552.1,97927,98199,-,MHC_I,NW_004535552.1_1:1,NW_004535552.1_1:1,NA,NA,FALSE
MHCI,pika,NW_004535552.1,132756,133046,-,IgC1_MHC_I_alpha3,101534430,LOC101534430,pseudogene,aa_OG0000446,TRUE
MHCI,pika,NW_004535552.1,138249,138538,-,IgC1_MHC_I_alpha3,101534430,LOC101534430,pseudogene,aa_OG0000446,TRUE
MHCI,pika,NW_004535552.1,139052,139270,-,MHC_I,101534430,LOC101534430,pseudogene,aa_OG0000446,TRUE
MHCI,pika,NW_004535552.1,144379,144753,-,IgC1_MHC_I_alpha3,101534674,LOC101534674,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,145281,145556,-,MHC_I,101534674,LOC101534674,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,145746,146030,-,MHC_I,101534674,LOC101534674,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,158036,158322,-,IgC1_MHC_Ia_HLA-F,101534915,LOC101534915,pseudogene,NA,TRUE
MHCI,pika,NW_004535552.1,158888,159172,-,MHC_I,101534915,LOC101534915,pseudogene,NA,TRUE
MHCI,pika,NW_004535552.1,159368,159427,-,MHC_I,101534915,LOC101534915,pseudogene,NA,TRUE
MHCI,pika,NW_004535552.1,159435,159638,-,MHC_I,101534915,LOC101534915,pseudogene,NA,TRUE
MHCI,pika,NW_004535552.1,167399,167664,-,IgC1_MHC_I_alpha3,101535160,LOC101535160,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,168197,168421,-,MHC_I,101535160,LOC101535160,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,168651,168917,-,MHC_I,101535160,LOC101535160,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,203667,204065,-,IgC1_MHC_I_alpha3,101535416,LOC101535416,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,204632,204907,-,MHC_I,101535416,LOC101535416,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,205120,205401,-,MHC_I,101535416,LOC101535416,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,234853,235197,-,IgC1_MHC_I_alpha3,101535893,LOC101535893,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,235740,236012,-,MHC_I,101535893,LOC101535893,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,236219,236443,-,MHC_I,101535893,LOC101535893,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,262444,262707,-,MHC_I,NW_004535552.1_2:1,NW_004535552.1_2:1,NA,NA,FALSE
MHCI,pika,NW_004535552.1,669477,669770,-,IgC1_MHC_I_alpha3,101518025,LOC101518025,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,670402,670671,-,MHC_I,101518025,LOC101518025,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,670908,671192,-,MHC_I,101518025,LOC101518025,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,1137789,1138112,-,IgC1_MHC_I_alpha3,101523650,LOC101523650,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,1138659,1138940,-,MHC_I,101523650,LOC101523650,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,1139138,1139404,-,MHC_I,101523650,LOC101523650,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535552.1,2227030,2227248,-,IgC1_MHC_Ia_HLA-B,NW_004535552.1_3:1,NW_004535552.1_3:1,NA,NA,FALSE
MHCI,pika,NW_004535564.1,1031324,1031677,-,IgC1_MHC_I_alpha3,101519479,LOC101519479,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1031910,1032182,-,MHC_I,101519479,LOC101519479,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1032401,1032685,-,MHC_I,101519479,LOC101519479,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1072045,1072176,-,IgC1_MHC_Ia_HLA-F,101519729,LOC101519729,NA,NA,FALSE
MHCI,pika,NW_004535564.1,1072766,1073032,-,MHC_I,101519729,LOC101519729,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1073255,1073533,-,MHC_I,101519729,LOC101519729,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1088640,1088792,-,IgC1_MHC_I_alpha3,101519974,LOC101519974,NA,NA,FALSE
MHCI,pika,NW_004535564.1,1089336,1089617,-,MHC_I,101519974,LOC101519974,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1089833,1090168,-,MHC_I,101519974,LOC101519974,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1110807,1111109,-,IgC1_MHC_I_alpha3,101520226,LOC101520226,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1111699,1111971,-,MHC_I,101520226,LOC101520226,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1112165,1112449,-,MHC_I,101520226,LOC101520226,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1130034,1130294,-,IgC1_MHC_I_alpha3,101520475,LOC101520475,pseudogene,NA,TRUE
MHCI,pika,NW_004535564.1,1130944,1131141,-,MHC_I,101520475,LOC101520475,pseudogene,NA,TRUE
MHCI,pika,NW_004535564.1,1131395,1131645,-,MHC_I,101520475,LOC101520475,pseudogene,NA,TRUE
MHCI,pika,NW_004535564.1,1144747,1145055,+,MHC_I,101520712,LOC101520712,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1145293,1145556,+,MHC_I,101520712,LOC101520712,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1146068,1146385,+,IgC1_MHC_I_alpha3,101520712,LOC101520712,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1196731,1197063,+,MHC_I,101527525,LOC101527525,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1197282,1197545,+,MHC_I,101527525,LOC101527525,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1198085,1198420,+,IgC1_MHC_I_alpha3,101527525,LOC101527525,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1266736,1267029,+,MHC_I,101520958,LOC101520958,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1267247,1267510,+,MHC_I,101520958,LOC101520958,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1268052,1268351,+,IgC1_MHC_I_alpha3,101520958,LOC101520958,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1909053,1909391,-,IgC1_MHC_I_alpha3,101523652,LOC101523652,pseudogene,aa_OG0023238,TRUE
MHCI,pika,NW_004535564.1,1909950,1910201,-,MHC_I,101523652,LOC101523652,pseudogene,aa_OG0023238,TRUE
MHCI,pika,NW_004535564.1,1947425,1947751,-,IgC1_MHC_I_alpha3,101523895,LOC101523895,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1948245,1948520,-,MHC_I,101523895,LOC101523895,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,1948658,1948972,-,MHC_I,101523895,LOC101523895,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2011784,2012029,-,MHC_I,101524599,LOC101524599,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2012573,2012831,-,MHC_I,101524599,LOC101524599,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2017974,2018269,-,IgC1_MHC_I_alpha3,101524599,LOC101524599,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2018762,2019031,-,MHC_I,101524599,LOC101524599,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2019400,2019546,-,MHC_I,101524599,LOC101524599,NA,NA,FALSE
MHCI,pika,NW_004535564.1,2030176,2030487,-,IgC1_MHC_I_alpha3,101524843,LOC101524843,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2031017,2031292,-,MHC_I,101524843,LOC101524843,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2031536,2031820,-,MHC_I,101524843,LOC101524843,mRNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2046451,2046747,-,IgC1_MHC_I_alpha3,101525080,LOC101525080,misc_RNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2047598,2047873,-,MHC_I,101525080,LOC101525080,misc_RNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2048107,2048379,-,MHC_I,101525080,LOC101525080,misc_RNA,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2063874,2064171,-,IgC1_MHC_I_alpha3,101533943,LOC101533943,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2064568,2064843,-,MHC_I,101533943,LOC101533943,pseudogene,aa_OG0000000,TRUE
MHCI,pika,NW_004535564.1,2064995,2065279,-,MHC_I,101533943,LOC101533943,pseudogene,aa_OG0000000,TRUE
MHCI,pika,scaffold_100163,813,968,+,MHC_I,scaffold_100163_1:1,scaffold_100163_1:1,NA,NA,FALSE
MHCI,pika,scaffold_11319,4013,4297,-,MHC_I,scaffold_11319_1:1,scaffold_11319_1:1,NA,NA,FALSE
MHCI,pika,scaffold_11319,51782,52117,-,IgC1_MHC_I_alpha3,scaffold_11319_1:2,scaffold_11319_1:2,NA,NA,FALSE
MHCI,pika,scaffold_11319,53214,53546,-,MHC_I,scaffold_11319_1:2,scaffold_11319_1:2,NA,NA,FALSE
MHCI,pika,scaffold_116238,551,874,+,IgC1_MHC_I_alpha3,scaffold_116238_1:1,scaffold_116238_1:1,NA,NA,FALSE
MHCI,pika,scaffold_125354,1077,1373,+,IgC1_MHC_I_alpha3,ENSOPRG00000016915,NA,protein_coding,aa_OG0028229,TRUE
MHCI,pika,scaffold_14286,47658,47876,+,MHC_I,scaffold_14286_1:1,scaffold_14286_1:1,NA,NA,FALSE
MHCI,pika,scaffold_14286,48390,48703,+,IgC1_MHC_I_alpha3,scaffold_14286_1:1,scaffold_14286_1:1,NA,NA,FALSE
MHCI,pika,scaffold_17125,42982,43266,+,MHC_I,scaffold_17125_1:1,scaffold_17125_1:1,NA,NA,FALSE
MHCI,pika,scaffold_17125,43771,43872,+,MHC_I,scaffold_17125_1:1,scaffold_17125_1:1,NA,NA,FALSE
MHCI,pika,scaffold_17125,44510,44833,+,IgC1_MHC_I_alpha3,scaffold_17125_1:1,scaffold_17125_1:1,NA,NA,FALSE
MHCI,pika,scaffold_18350,44950,45273,+,MHC_I,scaffold_18350_1:1,scaffold_18350_1:1,NA,NA,FALSE
MHCI,pika,scaffold_18350,45489,45764,+,MHC_I,scaffold_18350_1:1,scaffold_18350_1:1,NA,NA,FALSE
MHCI,pika,scaffold_18350,68847,69080,+,MHC_I,scaffold_18350_1:2,scaffold_18350_1:2,NA,NA,FALSE
MHCI,pika,scaffold_18350,70620,71012,+,IgC1_MHC_I_alpha3,scaffold_18350_1:2,scaffold_18350_1:2,NA,NA,FALSE
MHCI,pika,scaffold_20688,15337,15747,-,IgC1_MHC_I_alpha3,ENSOPRG00000003389,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_20688,16353,16625,-,MHC_I,ENSOPRG00000003389,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_20688,16833,17105,-,MHC_I,ENSOPRG00000003389,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_22128,1072,1347,-,MHC_I,scaffold_22128_1:1,scaffold_22128_1:1,NA,NA,FALSE
MHCI,pika,scaffold_22128,1560,1841,-,MHC_I,scaffold_22128_1:1,scaffold_22128_1:1,NA,NA,FALSE
MHCI,pika,scaffold_2510,125531,125836,+,MHC_I,ENSOPRG00000005336,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_2510,126019,126273,+,MHC_I,ENSOPRG00000005336,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_3464,56977,57261,+,MHC_I,scaffold_3464_1:1,scaffold_3464_1:1,NA,NA,FALSE
MHCI,pika,scaffold_37039,39513,39858,-,IgC1_MHC_I_alpha3,ENSOPRG00000002684,NA,protein_coding,aa_OG0038679,TRUE
MHCI,pika,scaffold_37039,40258,40552,-,MHC_I,ENSOPRG00000002684,NA,protein_coding,aa_OG0038679,TRUE
MHCI,pika,scaffold_37039,40702,41025,-,MHC_I,ENSOPRG00000002684,NA,protein_coding,aa_OG0038679,TRUE
MHCI,pika,scaffold_38795,40368,40712,-,IgC1_MHC_I_alpha3,ENSOPRG00000005149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_38795,41185,41457,-,MHC_I,ENSOPRG00000005149,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_42951,891,1187,-,IgC1_MHC_I_alpha3,scaffold_42951_1:1,scaffold_42951_1:1,NA,NA,FALSE
MHCI,pika,scaffold_42951,1587,1862,-,MHC_I,scaffold_42951_1:1,scaffold_42951_1:1,NA,NA,FALSE
MHCI,pika,scaffold_42951,2014,2337,-,MHC_I,scaffold_42951_1:1,scaffold_42951_1:1,NA,NA,FALSE
MHCI,pika,scaffold_4375,40745,41017,+,MHC_I,ENSOPRG00000016540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,41234,41500,+,MHC_I,ENSOPRG00000016540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,42058,42375,+,IgC1_MHC_I_alpha3,ENSOPRG00000016540,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,63449,63739,+,IgC1_MHC_I_alpha3,scaffold_4375_1:1,scaffold_4375_1:1,NA,NA,FALSE
MHCI,pika,scaffold_4375,72490,72813,+,MHC_I,ENSOPRG00000016548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,73991,74214,+,IgC1_MHC_I_alpha3,ENSOPRG00000016548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,143448,143579,+,MHC_I,scaffold_4375_2:1,scaffold_4375_2:1,NA,NA,FALSE
MHCI,pika,scaffold_4375,144088,144373,+,IgC1_MHC_I_alpha3,scaffold_4375_2:1,scaffold_4375_2:1,NA,NA,FALSE
MHCI,pika,scaffold_4375,187519,187665,+,MHC_I,ENSOPRG00000016560,NA,NA,NA,FALSE
MHCI,pika,scaffold_4375,188034,188303,+,MHC_I,ENSOPRG00000016560,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4375,188961,189139,+,IgC1_MHC_I_alpha3,ENSOPRG00000016560,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_43910,1246,1560,+,IgC1_MHC_I_alpha3,ENSOPRG00000012763,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_4548,29649,29945,+,IgC1_MHC_I_alpha3,scaffold_4548_1:1,scaffold_4548_1:1,NA,NA,FALSE
MHCI,pika,scaffold_4548,44556,44840,+,MHC_I,scaffold_4548_1:2,scaffold_4548_1:2,NA,NA,FALSE
MHCI,pika,scaffold_4548,45083,45211,+,MHC_I,scaffold_4548_1:2,scaffold_4548_1:2,NA,NA,FALSE
MHCI,pika,scaffold_4548,64844,65102,+,MHC_I,scaffold_4548_1:3,scaffold_4548_1:3,NA,NA,FALSE
MHCI,pika,scaffold_4548,65717,65896,+,MHC_I,scaffold_4548_1:3,scaffold_4548_1:3,NA,NA,FALSE
MHCI,pika,scaffold_4548,119614,119928,+,MHC_I,scaffold_4548_1:4,scaffold_4548_1:4,NA,NA,FALSE
MHCI,pika,scaffold_4548,120066,120260,+,MHC_I,scaffold_4548_1:4,scaffold_4548_1:4,NA,NA,FALSE
MHCI,pika,scaffold_4555,49193,49411,+,IgC1_MHC_Ia_HLA-B,scaffold_4555_1:1,scaffold_4555_1:1,NA,NA,FALSE
MHCI,pika,scaffold_54399,8967,9156,-,MHC_I,scaffold_54399_1:1,scaffold_54399_1:1,NA,NA,FALSE
MHCI,pika,scaffold_58431,8967,9251,+,MHC_I,scaffold_58431_1:1,scaffold_58431_1:1,NA,NA,FALSE
MHCI,pika,scaffold_66482,694,1062,-,IgC1_MHC_I_alpha3,ENSOPRG00000012289,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_66482,1622,1897,-,MHC_I,ENSOPRG00000012289,NA,protein_coding,aa_OG0000000,TRUE
MHCI,pika,scaffold_7039,73762,73860,+,IgC1_MHC_Ia_HLA-B,scaffold_7039_1:1,scaffold_7039_1:1,NA,NA,FALSE
MHCI,pika,scaffold_777,242122,242439,-,IgC1_MHC_I_alpha3,scaffold_777_1:1,scaffold_777_1:1,NA,NA,FALSE
MHCI,pika,scaffold_777,242943,243206,-,MHC_I,scaffold_777_1:1,scaffold_777_1:1,NA,NA,FALSE
MHCI,pika,scaffold_777,243443,243751,-,MHC_I,scaffold_777_1:1,scaffold_777_1:1,NA,NA,FALSE
MHCI,pika,scaffold_777,256871,257158,+,MHC_I,scaffold_777_1:2,scaffold_777_1:2,NA,NA,FALSE
MHCI,pika,scaffold_777,257371,257571,+,MHC_I,scaffold_777_1:2,scaffold_777_1:2,NA,NA,FALSE
MHCI,pika,scaffold_777,258243,258491,+,IgC1_MHC_I_alpha3,scaffold_777_1:2,scaffold_777_1:2,NA,NA,FALSE
MHCI,pika,scaffold_777,276056,276339,+,MHC_I,scaffold_777_1:3,scaffold_777_1:3,NA,NA,FALSE
MHCI,pika,scaffold_777,276533,276805,+,MHC_I,scaffold_777_1:3,scaffold_777_1:3,NA,NA,FALSE
MHCI,pika,scaffold_777,277395,277697,+,IgC1_MHC_I_alpha3,scaffold_777_1:3,scaffold_777_1:3,NA,NA,FALSE
MHCI,pika,scaffold_777,298628,298912,+,MHC_I,scaffold_777_1:4,scaffold_777_1:4,NA,NA,FALSE
MHCI,pika,scaffold_777,299128,299409,+,MHC_I,scaffold_777_1:4,scaffold_777_1:4,NA,NA,FALSE
MHCI,pika,scaffold_777,299944,300282,+,IgC1_MHC_I_alpha3,scaffold_777_1:4,scaffold_777_1:4,NA,NA,FALSE
MHCI,pika,scaffold_777,315286,315606,+,MHC_I,scaffold_777_1:5,scaffold_777_1:5,NA,NA,FALSE
MHCI,pika,scaffold_777,315787,316053,+,MHC_I,scaffold_777_1:5,scaffold_777_1:5,NA,NA,FALSE
MHCI,pika,scaffold_777,316645,317004,+,IgC1_MHC_I_alpha3,scaffold_777_1:5,scaffold_777_1:5,NA,NA,FALSE
MHCI,pika,scaffold_777,344836,345171,+,MHC_I,scaffold_777_1:6,scaffold_777_1:6,NA,NA,FALSE
MHCI,pika,scaffold_777,345391,345456,+,MHC_I,scaffold_777_1:6,scaffold_777_1:6,NA,NA,FALSE
MHCI,pika,scaffold_89099,4396,4749,+,IgC1_MHC_I_alpha3,scaffold_89099_1:1,scaffold_89099_1:1,NA,NA,FALSE
MHCI,pika,scaffold_94,216958,217095,+,IgC1_MHC_Ib_HLA-H,scaffold_94_1:1,scaffold_94_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01000632.1,122758,122850,-,IgC1_MHC_Ia_HLA-G,MTKA01000632.1_1:1,MTKA01000632.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01000632.1,122859,123074,-,IgC1_MHC_I_alpha3,MTKA01000632.1_1:1,MTKA01000632.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,25936,26262,-,IgC1_MHC_I_alpha3,ENSCCNG00000026855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,26840,27145,-,MHC_I,ENSCCNG00000026855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,29007,29291,-,MHC_I,ENSCCNG00000026855,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,46022,46207,-,MHC_I,MTKA01001252.1_1:1,MTKA01001252.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,52646,52810,+,MHC_I,MTKA01001252.1_1:2,MTKA01001252.1_1:2,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,53427,53744,+,IgC1_MHC_1b_Qa-1b,MTKA01001252.1_1:2,MTKA01001252.1_1:2,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,57489,57782,-,IgC1_MHC_I_alpha3,ENSCCNG00000026860,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,58474,58743,-,MHC_I,ENSCCNG00000026860,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,58980,59252,-,MHC_I,ENSCCNG00000026860,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,196206,196550,-,IgC1_MHC_I_alpha3,ENSCCNG00000026866;109687284,NA;LOC109687284,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,197115,197390,-,MHC_I,ENSCCNG00000026866;109687284,NA;LOC109687284,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,197641,197875,-,MHC_I,ENSCCNG00000026866;109687284,NA;LOC109687284,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,270515,270794,-,IgC1_MHC_I_alpha3,MTKA01001252.1_2:1,MTKA01001252.1_2:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,271385,271652,-,MHC_I,MTKA01001252.1_2:1,MTKA01001252.1_2:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001252.1,384749,385054,-,IgC1_MHC_I_alpha3,ENSCCNG00000026870,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,385612,385887,-,MHC_I,ENSCCNG00000026870,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001252.1,386112,386384,-,MHC_I,ENSCCNG00000026870,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001626.1,136565,136729,+,MHC_I,MTKA01001626.1_1:1,MTKA01001626.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,27893,28222,-,IgC1_MHC_I_alpha3,109690386,LOC109690386,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,28832,28966,-,MHC_I,109690386,LOC109690386,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,28972,29049,-,MHC_I,109690386,LOC109690386,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,29267,29531,-,MHC_I,109690386,LOC109690386,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,44525,44791,-,IgC1_MHC_I_alpha3,MTKA01001679.1_1:1,MTKA01001679.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,45330,45691,-,MHC_I,MTKA01001679.1_1:1,MTKA01001679.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,45957,46217,-,MHC_I,MTKA01001679.1_1:1,MTKA01001679.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,79359,79529,-,MHC_I,MTKA01001679.1_1:2,MTKA01001679.1_1:2,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,79748,79983,-,MHC_I,MTKA01001679.1_1:2,MTKA01001679.1_1:2,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,95338,95615,-,IgC1_MHC_I_alpha3,109690374,LOC109690374,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,96173,96268,-,MHC_I,109690374,LOC109690374,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,96282,96437,-,MHC_I,109690374,LOC109690374,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,96678,96935,-,MHC_I,ENSCCNG00000003071;109690374,NA;LOC109690374,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,115427,115831,-,IgC1_MHC_I_alpha3,MTKA01001679.1_2:1,MTKA01001679.1_2:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,139816,140175,-,IgC1_MHC_I_alpha3,MTKA01001679.1_2:2,MTKA01001679.1_2:2,NA,NA,FALSE
MHCI,american.beaver,MTKA01001679.1,167756,168061,-,IgC1_MHC_I_alpha3,ENSCCNG00000003071;109690376,NA;LOC109690376,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,168514,168684,-,MHC_I,ENSCCNG00000003071;109690376,NA;LOC109690376,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,168686,168799,-,MHC_I,ENSCCNG00000003071;109690376,NA;LOC109690376,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,168925,169290,-,MHC_I,ENSCCNG00000003071;109690376,NA;LOC109690376,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,183863,184214,-,IgC1_MHC_I_alpha3,ENSCCNG00000003211;109690377,NA;LOC109690377,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,184692,184967,-,MHC_I,ENSCCNG00000003211;109690377,NA;LOC109690377,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,185218,185490,-,MHC_I,ENSCCNG00000003250;109690377,NA;LOC109690377,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,191901,192224,-,IgC1_MHC_I_alpha3,ENSCCNG00000003256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,192692,192970,-,MHC_I,ENSCCNG00000003256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,193222,193524,-,MHC_I,ENSCCNG00000003256,NA,protein_coding,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,204169,204486,-,IgC1_MHC_I_alpha3,ENSCCNG00000003272;109690378,NA;LOC109690378,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,205072,205293,-,MHC_I,ENSCCNG00000003272;109690378,NA;LOC109690378,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,205692,205960,-,MHC_I,ENSCCNG00000003272;109690378,NA;LOC109690378,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,213851,214146,-,IgC1_MHC_I_alpha3,109690389,LOC109690389,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,214624,214767,-,MHC_I,109690389,LOC109690389,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01001679.1,214869,215099,-,MHC_I,109690389,LOC109690389,pseudogene,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01002982.1,145563,145809,+,MHC_I,MTKA01002982.1_1:1,MTKA01002982.1_1:1,NA,NA,FALSE
MHCI,american.beaver,MTKA01003686.1,7721,7993,+,MHC_I,ENSCCNG00000003389;109700907,NA;LOC109700907,protein_coding;pseudogene,aa_OG0000000;aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,8312,8530,+,MHC_I,ENSCCNG00000003389;109700907,NA;LOC109700907,protein_coding;pseudogene,aa_OG0000000;aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,9112,9445,+,IgC1_MHC_I_alpha3,ENSCCNG00000003389;109700907,NA;LOC109700907,protein_coding;pseudogene,aa_OG0000000;aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,42611,42899,+,IgC1_MHC_I_alpha3,109700907,LOC109700907,pseudogene,aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,63511,63789,+,MHC_I,109700907,LOC109700907,pseudogene,aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,64108,64209,+,MHC_I,109700907,LOC109700907,pseudogene,aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,64920,65126,+,IgC1_MHC_I_alpha3,109700907,LOC109700907,pseudogene,aa_OG0000159,TRUE
MHCI,american.beaver,MTKA01003686.1,99820,100118,+,MHC_I,ENSCCNG00000003845;109700906,NA;LOC109700906,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01003686.1,100309,100584,+,MHC_I,109700906,LOC109700906,mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01003686.1,106453,106740,+,IgC1_MHC_I_alpha3,109700906,LOC109700906,mRNA,aa_OG0000000,TRUE
MHCI,american.beaver,MTKA01003909.1,19544,19744,-,IgC1_MHC_1b_Qa-1b,MTKA01003909.1_1:1,MTKA01003909.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000020.1,1800686,1800919,+,IgC1_MHC_Ib_Qa-2,CZRN01000020.1_1:1,CZRN01000020.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000021.1,55971,56255,-,IgC1_MHC_I_alpha3,CZRN01000021.1_1:1,CZRN01000021.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000021.1,56845,57098,-,MHC_I,CZRN01000021.1_1:1,CZRN01000021.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000021.1,84254,84562,-,IgC1_MHC_I_alpha3,107143709,LOC107143709,ncRNA,rna_OG0089032,TRUE
MHCI,alpine.marmot,CZRN01000021.1,85573,85710,-,MHC_I,107143709,LOC107143709,ncRNA,rna_OG0089032,TRUE
MHCI,alpine.marmot,CZRN01000021.1,92174,92503,-,IgC1_MHC_I_alpha3,ENSMMMG00000006898,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,93168,93443,-,MHC_I,ENSMMMG00000006898,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,93732,93989,-,MHC_I,ENSMMMG00000006898,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,113297,113562,-,MHC_I,CZRN01000021.1_2:1,CZRN01000021.1_2:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000021.1,119255,119596,-,IgC1_MHC_I_alpha3,ENSMMMG00000006903,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,120146,120424,-,MHC_I,ENSMMMG00000006903,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,120538,120957,-,MHC_I,ENSMMMG00000006903,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,137213,137284,-,MHC_I,CZRN01000021.1_3:1,CZRN01000021.1_3:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000021.1,141077,141412,-,IgC1_MHC_I_alpha3,ENSMMMG00000006918;107143586,NA;LOC107143586,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,142197,142451,-,MHC_I,ENSMMMG00000006918;107143586,NA;LOC107143586,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,142694,142969,-,MHC_I,ENSMMMG00000006918;107143586,NA;LOC107143586,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,1493652,1493933,+,MHC_I,ENSMMMG00000020395,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,1494160,1494426,+,MHC_I,ENSMMMG00000020395,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,1495012,1495332,+,IgC1_MHC_I_alpha3,ENSMMMG00000020395,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,1616647,1616928,+,MHC_I,ENSMMMG00000024215,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000021.1,1618796,1619131,+,IgC1_MHC_I_alpha3,CZRN01000021.1_4:1,CZRN01000021.1_4:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000062.1,8036940,8037197,-,IgC1_MHC_Ib_HLA-H,CZRN01000062.1_1:1,CZRN01000062.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000101.1,1377755,1377913,-,IgC1_MHC_Ib_HLA-Cw3-4,CZRN01000101.1_1:1,CZRN01000101.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,50462,50797,+,IgC1_MHC_I_alpha3,ENSMMMG00000015533,NA,protein_coding,aa_OG0035064,TRUE
MHCI,alpine.marmot,CZRN01000149.1,100260,100406,+,MHC_I,CZRN01000149.1_1:1,CZRN01000149.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,100409,100567,+,MHC_I,CZRN01000149.1_1:1,CZRN01000149.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,100635,100673,-,MHC_I,CZRN01000149.1_1:1,CZRN01000149.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,100675,100770,-,MHC_I,CZRN01000149.1_1:1,CZRN01000149.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,121200,121527,+,MHC_I,ENSMMMG00000015548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,121775,122059,+,MHC_I,ENSMMMG00000015548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,122598,123050,+,IgC1_MHC_I_alpha3,ENSMMMG00000015548,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,151888,152151,+,MHC_I,107160419,LOC107160419,pseudogene,rna_OG0065552,TRUE
MHCI,alpine.marmot,CZRN01000149.1,152398,152649,+,MHC_I,107160419,LOC107160419,pseudogene,rna_OG0065552,TRUE
MHCI,alpine.marmot,CZRN01000149.1,153224,153569,+,IgC1_MHC_I_alpha3,107160419,LOC107160419,pseudogene,rna_OG0065552,TRUE
MHCI,alpine.marmot,CZRN01000149.1,171596,171895,+,MHC_I,ENSMMMG00000019657;107160421,NA;LOC107160421,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,172101,172367,+,MHC_I,ENSMMMG00000019657;107160421,NA;LOC107160421,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,172962,173270,+,IgC1_MHC_I_alpha3,ENSMMMG00000019657;107160421,NA;LOC107160421,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,174988,175143,+,IgC1_MHC_I_alpha3,CZRN01000149.1_2:1,CZRN01000149.1_2:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,199465,199675,+,MHC_I,107160422,LOC107160422,pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,199677,199742,+,MHC_I,107160422,LOC107160422,pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,199928,200116,+,MHC_I,107160422,LOC107160422,pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,200526,200980,+,IgC1_MHC_I_alpha3,107160422,LOC107160422,pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,218326,218409,+,MHC_I,CZRN01000149.1_3:1,CZRN01000149.1_3:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,218417,218524,+,MHC_I,CZRN01000149.1_3:1,CZRN01000149.1_3:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,218809,219063,+,MHC_I,CZRN01000149.1_3:1,CZRN01000149.1_3:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,235850,235999,+,MHC_I,107160423,LOC107160423,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,236320,236424,+,MHC_I,107160423,LOC107160423,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,237287,237546,+,IgC1_MHC_Ia_HLA-B,107160423,LOC107160423,pseudogene,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,285507,285680,+,IgC1_MHC_I_alpha3,CZRN01000149.1_4:1,CZRN01000149.1_4:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,330365,330637,+,MHC_I,ENSMMMG00000020021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,330888,331154,+,MHC_I,ENSMMMG00000020021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,331881,331937,+,IgC1_MHC_Ia_HLA-B,ENSMMMG00000020021,NA,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000149.1,332559,332894,+,IgC1_MHC_I_alpha3,ENSMMMG00000020021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,367546,367830,+,MHC_I,ENSMMMG00000020028,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,369282,369557,+,MHC_I,ENSMMMG00000020028,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000149.1,370119,370445,+,IgC1_MHC_I_alpha3,ENSMMMG00000020028,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000154.1,156455,157195,+,MHC_I,ENSMMMG00000020961;107160568,NA;LOC107160568,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000154.1,159021,159329,+,IgC1_MHC_I_alpha3,ENSMMMG00000020962;107160568,NA;LOC107160568,lncRNA;mRNA,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000157.1,885864,886025,-,MHC_I,CZRN01000157.1_1:1,CZRN01000157.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000157.1,886034,886078,-,MHC_I,CZRN01000157.1_1:1,CZRN01000157.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000180.1,537417,537827,+,MHC_I,ENSMMMG00000022602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000180.1,538091,538354,+,MHC_I,ENSMMMG00000022602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000180.1,538894,539199,+,IgC1_MHC_I_alpha3,ENSMMMG00000022602,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,529627,529897,+,MHC_I,107160870,LOC107160870,pseudogene,rna_OG0044319,TRUE
MHCI,alpine.marmot,CZRN01000182.1,530164,530376,+,MHC_I,107160870,LOC107160870,pseudogene,rna_OG0044319,TRUE
MHCI,alpine.marmot,CZRN01000182.1,533984,534319,-,IgC1_MHC_I_alpha3,ENSMMMG00000023021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,534887,535153,-,MHC_I,ENSMMMG00000023021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,535405,535686,-,MHC_I,ENSMMMG00000023021,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,552468,552695,+,MHC_I,CZRN01000182.1_1:1,CZRN01000182.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000182.1,553153,553431,+,IgC1_MHC_I_alpha3,CZRN01000182.1_1:1,CZRN01000182.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000182.1,580687,580959,+,MHC_I,ENSMMMG00000024246,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,581202,581468,+,MHC_I,ENSMMMG00000024246,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01000182.1,581948,582263,+,IgC1_MHC_I_alpha3,ENSMMMG00000024246,NA,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000323.1,129512,129894,-,IgC1_MHC_Ib_HLA-Cw3-4,107133657,LOC107133657,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01000323.1,130431,130586,-,MHC_I,107133657,LOC107133657,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01000323.1,130627,130725,-,MHC_I,107133657,LOC107133657,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01000345.1,5357,5620,-,MHC_I,107133677,LOC107133677,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01000345.1,5880,6101,-,MHC_I,107133677,LOC107133677,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01000345.1,23829,24134,-,IgC1_MHC_I_alpha3,CZRN01000345.1_1:1,CZRN01000345.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01000345.1,24666,24758,-,MHC_I,CZRN01000345.1_1:1,CZRN01000345.1_1:1,NA,NA,FALSE
MHCI,alpine.marmot,CZRN01005658.1,1032,1097,+,MHC_I,107134825,LOC107134825,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01005658.1,1141,1296,+,MHC_I,107134825,LOC107134825,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01005658.1,1845,2137,+,IgC1_MHC_Ia_H2Db_H2Ld,107134825,LOC107134825,pseudogene,rna_OG0075730,TRUE
MHCI,alpine.marmot,CZRN01005855.1,1020,1283,-,MHC_I,ENSMMMG00000011044,NA,protein_coding,aa_OG0000000,TRUE
MHCI,alpine.marmot,CZRN01005855.1,1547,1957,-,MHC_I,ENSMMMG00000011044,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000022.1,6810258,6810476,+,MHC_I,QVIC01000022.1_1:1,QVIC01000022.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000022.1,6810533,6810736,+,IgC1_MHC_I_alpha3,QVIC01000022.1_1:1,QVIC01000022.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000562.1,702007,702183,+,IgC1_MHC_Ib_HLA-E,QVIC01000562.1_1:1,QVIC01000562.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000586.1,300608,300652,+,MHC_I,113200085,LOC113200085,pseudogene,rna_OG0075730,TRUE
MHCI,arctic.ground.squirrel,QVIC01000586.1,300661,300837,+,MHC_I,113200085,LOC113200085,pseudogene,rna_OG0075730,TRUE
MHCI,arctic.ground.squirrel,QVIC01000586.1,301394,301682,+,IgC1_MHC_I_alpha3,113200085,LOC113200085,pseudogene,rna_OG0075730,TRUE
MHCI,arctic.ground.squirrel,QVIC01000624.1,130293,130506,+,IgC1_MHC_I_alpha3,QVIC01000624.1_1:1,QVIC01000624.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,639021,639347,-,IgC1_MHC_I_alpha3,ENSUPAG00010004407,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,639924,640190,-,MHC_I,ENSUPAG00010004407,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,641628,641912,-,MHC_I,ENSUPAG00010004407,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,687432,687734,-,IgC1_MHC_I_alpha3,ENSUPAG00010004420,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,688307,688425,-,IgC1_MHC_Ia_HLA-B,ENSUPAG00010004420,NA,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,689306,689572,-,MHC_I,ENSUPAG00010004420,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,689820,690092,-,MHC_I,ENSUPAG00010004420,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,733028,733327,-,IgC1_MHC_I_alpha3,QVIC01000628.1_2:1,QVIC01000628.1_2:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,777759,778008,-,IgC1_MHC_Ia_HLA-B,QVIC01000628.1_2:2,QVIC01000628.1_2:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,778856,778960,-,MHC_I,QVIC01000628.1_2:2,QVIC01000628.1_2:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,779290,779439,-,MHC_I,QVIC01000628.1_2:2,QVIC01000628.1_2:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000628.1,793463,793724,-,IgC1_MHC_I_alpha3,ENSUPAG00010004484;113200798,NA;LOC113200798,lncRNA;mRNA,rna_OG0044323,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,794809,795072,-,MHC_I,ENSUPAG00010004484;113200798,NA;LOC113200798,lncRNA;mRNA,rna_OG0044323,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,795362,795487,-,MHC_I,ENSUPAG00010004484;113200798,NA;LOC113200798,lncRNA;mRNA,rna_OG0044323,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,795495,795557,-,MHC_I,ENSUPAG00010004484,NA,lncRNA,rna_OG0044323,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,819038,819327,-,IgC1_MHC_I_alpha3,ENSUPAG00010004513;113200795,NA;LOC113200795,protein_coding;pseudogene,aa_OG0000000;rna_OG0032194,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,819940,820546,-,MHC_I,113200795,LOC113200795,pseudogene,rna_OG0032194,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,845887,846243,-,IgC1_MHC_I_alpha3,ENSUPAG00010004513;113200796,NA;LOC113200796,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,846815,847081,-,MHC_I,ENSUPAG00010004513;113200796,NA;LOC113200796,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000628.1,847310,847720,-,MHC_I,ENSUPAG00010004513;113200796,NA;LOC113200796,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,438522,438581,+,MHC_I,113201542,LOC113201542,pseudogene,rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,438602,438738,+,MHC_I,113201542,LOC113201542,pseudogene,rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,438919,439047,+,MHC_I,ENSUPAG00010015481;113201542,NA;LOC113201542,protein_coding;pseudogene,aa_OG0000000;rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,439053,439172,+,MHC_I,ENSUPAG00010015481;113201542,NA;LOC113201542,protein_coding;pseudogene,aa_OG0000000;rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,439667,440017,+,IgC1_MHC_I_alpha3,ENSUPAG00010015481;113201542,NA;LOC113201542,protein_coding;pseudogene,aa_OG0000000;rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,476803,477060,+,MHC_I,113201542,LOC113201542,pseudogene,rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,477307,477432,+,MHC_I,113201542,LOC113201542,pseudogene,rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,477435,477557,+,MHC_I,113201542,LOC113201542,pseudogene,rna_OG0044319,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,481198,481536,-,IgC1_MHC_I_alpha3,ENSUPAG00010015541,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,482082,482348,-,MHC_I,ENSUPAG00010015541,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,482564,482857,-,MHC_I,ENSUPAG00010015541,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,510599,510844,+,MHC_I,QVIC01000678.1_1:1,QVIC01000678.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000678.1,511269,511457,+,IgC1_MHC_Ia_HLA-G,QVIC01000678.1_1:1,QVIC01000678.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000678.1,539430,539693,+,MHC_I,ENSUPAG00010018871;113201538,NA;LOC113201538,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,539930,540195,+,MHC_I,113201538,LOC113201538,pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,540722,540988,+,IgC1_MHC_I_alpha3,113201538,LOC113201538,pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,552870,553145,+,MHC_I,ENSUPAG00010018885;113201548,NA;LOC113201548,protein_coding;pseudogene,aa_OG0000000;rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,553392,553682,+,MHC_I,113201548,LOC113201548,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,554228,554525,+,IgC1_MHC_I_alpha3,113201548,LOC113201548,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,580149,580352,+,MHC_I,ENSUPAG00010018906;113201548,NA;LOC113201548,protein_coding;pseudogene,aa_OG0000000;rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,657359,657541,+,MHC_I,ENSUPAG00010018906;113201546,NA;LOC113201546,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,657772,657987,+,MHC_I,ENSUPAG00010018906;113201546,NA;LOC113201546,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,658014,658061,+,MHC_I,ENSUPAG00010018906;113201546,NA;LOC113201546,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,658642,658977,+,IgC1_MHC_I_alpha3,ENSUPAG00010018906;113201546,NA;LOC113201546,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,718172,718444,+,MHC_I,ENSUPAG00010019592;113201547,NA;LOC113201547,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000678.1,718670,718819,+,MHC_I,113201547,LOC113201547,mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000830.1,212587,213327,+,MHC_I,ENSUPAG00010005600,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000830.1,215115,215423,+,IgC1_MHC_I_alpha3,ENSUPAG00010005600,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,14498,14739,+,MHC_I,113177102,LOC113177102,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,14980,15262,+,MHC_I,113177102,LOC113177102,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,15841,16173,+,IgC1_MHC_I_alpha3,113177102,LOC113177102,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,25000,25200,+,IgC1_MHC_Ia_HLA-B,QVIC01000964.1_1:1,QVIC01000964.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000964.1,65552,65881,+,MHC_I,ENSUPAG00010023417,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,66157,66432,+,MHC_I,ENSUPAG00010023417,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,66973,67314,+,IgC1_MHC_I_alpha3,ENSUPAG00010023417,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,101581,101850,+,MHC_I,113177106,LOC113177106,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,102088,102336,+,MHC_I,113177106,LOC113177106,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,110963,111271,+,IgC1_MHC_I_alpha3,113177106,LOC113177106,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,147767,148031,+,MHC_I,QVIC01000964.1_2:1,QVIC01000964.1_2:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000964.1,149731,150066,+,IgC1_MHC_I_alpha3,QVIC01000964.1_2:1,QVIC01000964.1_2:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000964.1,158377,158549,+,IgC1_MHC_I_alpha3,QVIC01000964.1_2:2,QVIC01000964.1_2:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01000964.1,194275,194613,+,MHC_I,ENSUPAG00010023664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,194823,195089,+,MHC_I,ENSUPAG00010023664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,195667,196002,+,IgC1_MHC_I_alpha3,ENSUPAG00010023664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,291695,291847,+,MHC_I,113177103,LOC113177103,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,292093,292399,+,MHC_I,113177103,LOC113177103,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01000964.1,293886,294220,+,IgC1_MHC_I_alpha3,113177103,LOC113177103,pseudogene,rna_OG0065552,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,5994,6173,+,MHC_I,QVIC01001036.1_1:1,QVIC01001036.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,6375,6485,+,MHC_I,QVIC01001036.1_1:1,QVIC01001036.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,6488,6639,+,MHC_I,QVIC01001036.1_1:1,QVIC01001036.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,6640,6819,+,IgC1_MHC_I_alpha3,QVIC01001036.1_1:1,QVIC01001036.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,14304,14534,+,IgC1_MHC_I_alpha3,QVIC01001036.1_1:2,QVIC01001036.1_1:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,87399,87680,+,MHC_I,ENSUPAG00010000660,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,87900,88175,+,MHC_I,ENSUPAG00010000660,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,88739,89074,+,IgC1_MHC_I_alpha3,ENSUPAG00010000660,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,172966,173085,+,MHC_I,113177298,LOC113177298,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,173111,173155,+,MHC_I,113177298,LOC113177298,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,173434,173699,+,MHC_I,113177298,LOC113177298,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,174271,174538,+,IgC1_MHC_I_alpha3,113177298,LOC113177298,pseudogene,rna_OG0065551,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,197265,197561,+,IgC1_MHC_I_alpha3,QVIC01001036.1_2:1,QVIC01001036.1_2:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001036.1,232162,232521,-,IgC1_MHC_I_alpha3,ENSUPAG00010000728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001036.1,233071,233346,-,MHC_I,ENSUPAG00010000728,NA,protein_coding,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001092.1,777,1040,-,IgC1_MHC_I_alpha3,QVIC01001092.1_1:1,QVIC01001092.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001092.1,15463,15684,-,IgC1_MHC_I_alpha3,ENSUPAG00010003163;113177452,NA;LOC113177452,lncRNA;ncRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001092.1,223097,223363,-,IgC1_MHC_I_alpha3,QVIC01001092.1_2:2,QVIC01001092.1_2:2,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001285.1,73766,74035,+,MHC_I,ENSUPAG00010019888;113177827,NA;LOC113177827,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001285.1,74268,74561,+,MHC_I,ENSUPAG00010019888;113177827,NA;LOC113177827,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001285.1,75111,75446,+,IgC1_MHC_I_alpha3,ENSUPAG00010019888;113177827,NA;LOC113177827,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001401.1,12854,13092,-,IgC1_MHC_I_alpha3,QVIC01001401.1_1:1,QVIC01001401.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001401.1,13694,13798,-,MHC_I,QVIC01001401.1_1:1,QVIC01001401.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001401.1,55649,56032,-,IgC1_MHC_I_alpha3,113177967,LOC113177967,mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001401.1,56974,57267,-,MHC_I,113177967,LOC113177967,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01001401.1,57537,57812,-,MHC_I,113177967,LOC113177967,mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001401.1,83263,83496,-,MHC_I,113177967,LOC113177967,mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001401.1,83779,84036,-,MHC_I,113177967,LOC113177967,mRNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001438.1,58763,59098,-,IgC1_MHC_I_alpha3,ENSUPAG00010001594;113178007,NA;LOC113178007,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001438.1,59635,60078,-,MHC_I,ENSUPAG00010001594;113178007,NA;LOC113178007,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,arctic.ground.squirrel,QVIC01001822.1,59388,59663,-,IgC1_MHC_I_alpha3,QVIC01001822.1_1:1,QVIC01001822.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01007479.1,184,264,-,MHC_I,QVIC01007479.1_1:1,QVIC01007479.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01008524.1,103,261,-,MHC_I,QVIC01008524.1_1:1,QVIC01008524.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01009671.1,1031,1250,+,MHC_I,QVIC01009671.1_1:1,QVIC01009671.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01009852.1,448,875,-,IgC1_MHC_I_alpha3,QVIC01009852.1_1:1,QVIC01009852.1_1:1,NA,NA,FALSE
MHCI,arctic.ground.squirrel,QVIC01011357.1,44,288,-,MHC_I,QVIC01011357.1_1:1,QVIC01011357.1_1:1,NA,NA,FALSE
MHCI,beluga.whale,ML702034.1,12212825,12212902,-,IgC1_MHC_Ib_HLA-H,ML702034.1_1:1,ML702034.1_1:1,NA,NA,FALSE
MHCI,beluga.whale,ML702037.1,23627024,23627356,+,MHC_I,ENSDLEG00000006210,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702037.1,23628679,23628987,+,MHC_I,ENSDLEG00000006210,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702037.1,23631326,23631619,+,IgC1_MHC_I_alpha3,ENSDLEG00000006210,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702049.1,20316482,20316748,+,MHC_I,ENSDLEG00000003493,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702089.1,3661369,3661690,-,IgC1_MHC_I_alpha3,111168473,LOC111168473,pseudogene,rna_OG0060636,TRUE
MHCI,beluga.whale,ML702089.1,3666634,3666779,+,IgC1_MHC_Ia_HLA-B,ML702089.1_1:1,ML702089.1_1:1,NA,NA,FALSE
MHCI,beluga.whale,ML702089.1,4237896,4238234,-,IgC1_MHC_I_alpha3,ENSDLEG00000019315,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702089.1,4238819,4239085,-,MHC_I,ENSDLEG00000019315,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702089.1,4239284,4239595,-,MHC_I,ENSDLEG00000019315,NA,protein_coding,aa_OG0000000,TRUE
MHCI,beluga.whale,ML702097.1,8138505,8138675,+,MHC_I,ML702097.1_1:1,ML702097.1_1:1,NA,NA,FALSE
MHCI,beluga.whale,ML702097.1,8139596,8139874,+,IgC1_MHC_I_alpha3,ML702097.1_1:1,ML702097.1_1:1,NA,NA,FALSE
MHCI,beluga.whale,ML702937.1,952,1218,+,MHC_I,ENSDLEG00000018543;111171394,NA;LOC111171394,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,beluga.whale,NQVZ02022762.1,14736,14881,-,IgC1_MHC_Ia_HLA-B,NQVZ02022762.1_1:1,NQVZ02022762.1_1:1,NA,NA,FALSE
MHCI,sperm.whale,6,84737693,84737959,+,MHC_I,114486485,LOC114486485,pseudogene,aa_OG0000000,TRUE
MHCI,sperm.whale,16,39219121,39219291,+,MHC_I,16_1:1,16_1:1,NA,NA,FALSE
MHCI,sperm.whale,16,39220096,39220470,+,IgC1_MHC_I_alpha3,16_1:1,16_1:1,NA,NA,FALSE
MHCI,sperm.whale,18,85791626,85791901,+,MHC_I,ENSPCTG00005011158;102996517,NA;LOC102996517,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85793818,85794099,+,MHC_I,102996517,LOC102996517,mRNA;misc_RNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85820926,85821054,-,IgC1_MHC_Ib_HLA-E,ENSPCTG00005011210;102996245,NA;LOC102996245,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85821966,85822256,-,MHC_I,ENSPCTG00005011210;102996245,NA;LOC102996245,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85822448,85822720,-,MHC_I,ENSPCTG00005011210;102996245,NA;LOC102996245,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85834207,85834358,-,IgC1_MHC_I_alpha3,18_1:1,18_1:1,NA,NA,FALSE
MHCI,sperm.whale,18,85842282,85842608,-,IgC1_MHC_I_alpha3,ENSPCTG00005012018,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85843193,85843459,-,MHC_I,ENSPCTG00005012018,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85843658,85843969,-,MHC_I,ENSPCTG00005012018,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85860676,85861010,+,IgC1_MHC_I_alpha3,18_2:1,18_2:1,NA,NA,FALSE
MHCI,sperm.whale,18,85871029,85871169,-,IgC1_MHC_Ia_HLA-B,114484159,LOC114484159,ncRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85872558,85872884,-,IgC1_MHC_I_alpha3,112064318,LOC112064318,mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85879471,85879593,-,IgC1_MHC_I_alpha3,ENSPCTG00005012018,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85881410,85881736,-,IgC1_MHC_I_alpha3,ENSPCTG00005012018;112064292,NA;LOC112064292,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85882321,85882587,-,MHC_I,ENSPCTG00005012018;112064292,NA;LOC112064292,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,18,85882786,85883097,-,MHC_I,ENSPCTG00005012018;112064292,NA;LOC112064292,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,sperm.whale,19,15113186,15113329,+,IgC1_MHC_Ia_RT1-Aa,19_1:1,19_1:1,NA,NA,FALSE
MHCI,sperm.whale,ML161489.1,9767,10099,-,IgC1_MHC_I_alpha3,ENSPCTG00005016849,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,ML161489.1,12362,12670,-,MHC_I,ENSPCTG00005016849,NA,protein_coding,aa_OG0000000,TRUE
MHCI,sperm.whale,ML161489.1,13914,14189,-,MHC_I,ENSPCTG00005016849,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02000235.1,767,1033,-,IgC1_MHC_I_alpha3,114032473,LOC114032473,mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02000297.1,793,1059,-,IgC1_MHC_I_alpha3,114034527,LOC114034527,mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02001367.1,2950,3234,-,IgC1_MHC_I_alpha3,ENSVURG00010011641;114045638,NA;LOC114045638,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02001367.1,3420,4064,-,MHC_I,ENSVURG00010011641;114045638,NA;LOC114045638,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02001568.1,376,1065,+,MHC_I,ENSVURG00010015065,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02001568.1,1263,1547,+,IgC1_MHC_I_alpha3,ENSVURG00010015065,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003334.1,1497,1808,-,IgC1_MHC_I_alpha3,ENSVURG00010007570;114052097,NA;LOC114052097,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003334.1,2025,2288,-,MHC_I,ENSVURG00010007570;114052097,NA;LOC114052097,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003334.1,2447,2719,-,MHC_I,ENSVURG00010007570;114052097,NA;LOC114052097,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003594.1,2793,3062,+,MHC_I,ENSVURG00010014962;114052457,NA;LOC114052457,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003594.1,3194,3463,+,MHC_I,ENSVURG00010014962;114052457,NA;LOC114052457,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003594.1,3674,3964,+,IgC1_MHC_I_alpha3,ENSVURG00010014962;114052457,NA;LOC114052457,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003930.1,6265,6552,+,MHC_I,ENSVURG00010015314,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003930.1,6743,7015,+,MHC_I,ENSVURG00010015314,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02003930.1,7222,7563,+,IgC1_MHC_I_alpha3,ENSVURG00010015314,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02004194.1,869,1168,-,IgC1_MHC_I_alpha3,ENSVURG00010019612,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02004194.1,1358,1627,-,MHC_I,ENSVURG00010019612,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02004194.1,1740,2009,-,MHC_I,ENSVURG00010019612,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02004516.1,1962,2618,+,MHC_I,ENSVURG00010002147,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02009824.1,11341833,11342096,-,IgC1_MHC_I_alpha3,ENSVURG00010009238;114036295,NA;LOC114036295,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02009824.1,11342294,11342545,-,MHC_I,114036295,LOC114036295,pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02009824.1,11342680,11343045,-,MHC_I,ENSVURG00010009238;114036295,NA;LOC114036295,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02010193.1,8412028,8412303,+,MHC_I,ENSVURG00010012372,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02010193.1,8412341,8412688,+,MHC_I,ENSVURG00010012372,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02010193.1,8412852,8413295,+,IgC1_MHC_I_alpha3,ENSVURG00010012372,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02012901.1,890856,891125,+,MHC_I,ENSVURG00010010536;114040268,NA;LOC114040268,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02012901.1,891326,891610,+,MHC_I,ENSVURG00010010536;114040268,NA;LOC114040268,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02012901.1,891780,892079,+,IgC1_MHC_I_alpha3,ENSVURG00010010536;114040268,NA;LOC114040268,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02013931.1,1375248,1375454,-,IgC1_MHC_Ia_RT1-Aa,UNPS02013931.1_1:1,UNPS02013931.1_1:1,NA,NA,FALSE
MHCI,common.wombat,UNPS02014176.1,8287,8559,-,IgC1_MHC_I_alpha3,ENSVURG00010003892;114041632,NA;LOC114041632,protein_coding;pseudogene,aa_OG0032667;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014176.1,8758,9027,-,MHC_I,ENSVURG00010003892;114041632,NA;LOC114041632,protein_coding;pseudogene,aa_OG0032667;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014176.1,9077,9361,-,MHC_I,ENSVURG00010003892;114041632,NA;LOC114041632,protein_coding;pseudogene,aa_OG0032667;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014393.1,32478,33173,+,MHC_I,ENSVURG00010007076,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014393.1,33374,33715,+,IgC1_MHC_I_alpha3,ENSVURG00010007076,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014629.1,5911,6549,+,MHC_I,ENSVURG00010014115,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014629.1,6756,7046,+,IgC1_MHC_I_alpha3,ENSVURG00010014115,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014669.1,134680,135414,+,MHC_I,ENSVURG00010014517,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014669.1,135627,135917,+,IgC1_MHC_I_alpha3,ENSVURG00010014517,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014791.1,64290800,64291165,-,IgC1_MHC_I_alpha3,UNPS02014791.1_1:1,UNPS02014791.1_1:1,NA,NA,FALSE
MHCI,common.wombat,UNPS02014811.1,6406447,6406728,-,IgC1_MHC_I_alpha3,UNPS02014811.1_1:1,UNPS02014811.1_1:1,NA,NA,FALSE
MHCI,common.wombat,UNPS02014811.1,6458679,6458918,+,MHC_I,ENSVURG00010001871,NA,protein_coding,aa_OG0030909,TRUE
MHCI,common.wombat,UNPS02014811.1,6526176,6526460,+,IgC1_MHC_I_alpha3,UNPS02014811.1_2:1,UNPS02014811.1_2:1,NA,NA,FALSE
MHCI,common.wombat,UNPS02014811.1,8080711,8081046,-,IgC1_MHC_I_alpha3,114053577,LOC114053577,pseudogene,NA,TRUE
MHCI,common.wombat,UNPS02014811.1,8081315,8081566,-,MHC_I,114053577,LOC114053577,pseudogene,NA,TRUE
MHCI,common.wombat,UNPS02014811.1,8081891,8082091,-,MHC_I,114053577,LOC114053577,pseudogene,NA,TRUE
MHCI,common.wombat,UNPS02014811.1,8147889,8148260,-,IgC1_MHC_I_alpha3,ENSVURG00010006448,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8148510,8148788,-,MHC_I,ENSVURG00010006448,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8148944,8149318,-,MHC_I,ENSVURG00010006448,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8280257,8280535,-,IgC1_MHC_I_alpha3,ENSVURG00010006738,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8280730,8281008,-,MHC_I,ENSVURG00010006738,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8281224,8281514,-,MHC_I,ENSVURG00010006738,NA,protein_coding,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8404526,8404837,-,IgC1_MHC_I_alpha3,ENSVURG00010012584;114053394,NA;LOC114053394,protein_coding;pseudogene,aa_OG0034751;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8405044,8405358,-,MHC_I,ENSVURG00010012584;114053394,NA;LOC114053394,protein_coding;pseudogene,aa_OG0034751;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8405514,8405801,-,MHC_I,ENSVURG00010012584;114053394,NA;LOC114053394,protein_coding;pseudogene,aa_OG0034751;aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8484710,8484946,-,IgC1_MHC_I_alpha3,ENSVURG00010014288;114053395,NA;LOC114053395,pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8485192,8485455,-,MHC_I,ENSVURG00010014288;114053395,NA;LOC114053395,pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014811.1,8485662,8485949,-,MHC_I,ENSVURG00010014288;114053395,NA;LOC114053395,pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014817.1,15867344,15867616,+,MHC_I,ENSVURG00010019332;114023336,NA;LOC114023336,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014817.1,15867732,15867959,+,MHC_I,ENSVURG00010019332;114023336,NA;LOC114023336,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014817.1,15868000,15868080,+,MHC_I,ENSVURG00010019332;114023336,NA;LOC114023336,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014817.1,15868253,15868618,+,IgC1_MHC_I_alpha3,ENSVURG00010019332;114023336,NA;LOC114023336,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014821.1,39258395,39259048,-,MHC_I,ENSVURG00010007226;114024449,NA;LOC114024449,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014821.1,39259065,39259103,-,MHC_I,114024449,LOC114024449,pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014821.1,39259114,39259191,-,MHC_I,ENSVURG00010007226;114024449,NA;LOC114024449,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,common.wombat,UNPS02014832.1,28635440,28635871,+,MHC_I,114025832,LOC114025832,pseudogene,NA,TRUE
MHCI,common.wombat,UNPS02014832.1,28635930,28635995,+,MHC_I,114025832,LOC114025832,pseudogene,NA,TRUE
MHCI,common.wombat,UNPS02014832.1,28635999,28636284,+,IgC1_MHC_I_alpha3,114025832,LOC114025832,pseudogene,NA,TRUE
MHCI,elephant,scaffold_1,104175597,104175860,+,MHC_I,scaffold_1_1:1,scaffold_1_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_1,104186300,104186644,+,IgC1_MHC_I_alpha3,scaffold_1_1:2,scaffold_1_1:2,NA,NA,FALSE
MHCI,elephant,scaffold_1,104212510,104212785,+,MHC_I,ENSLAFG00000028506;100669340,NA;LOC100669340,protein_coding;mRNA;misc_RNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_1,104214551,104214856,+,MHC_I,ENSLAFG00000028506;100669340,NA;LOC100669340,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_1,104217523,104217813,+,IgC1_MHC_I_alpha3,ENSLAFG00000028506;100669340,NA;LOC100669340,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_108,1099437,1099768,-,IgC1_MHC_I_alpha3,100675987,LOC100675987,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_108,1100266,1100553,-,MHC_I,100675987,LOC100675987,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_108,1100833,1101105,-,MHC_I,100675987,LOC100675987,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,35009,35325,-,IgC1_MHC_I_alpha3,scaffold_122_1:1,scaffold_122_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_122,1871584,1871893,-,IgC1_MHC_I_alpha3,100656828,LOC100656828,misc_RNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,1885573,1885851,-,IgC1_MHC_I_alpha3,ENSLAFG00000029181;100653700,NA;LOC100653700,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,1886464,1886730,-,MHC_I,ENSLAFG00000029181;100653700,NA;LOC100653700,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,1982532,1982807,-,IgC1_MHC_I_alpha3,ENSLAFG00000031929;100656828,NA;LOC100656828,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,1983426,1983692,-,MHC_I,ENSLAFG00000031929;100656828,NA;LOC100656828,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,1983933,1984205,-,MHC_I,ENSLAFG00000031929;100656828,NA;LOC100656828,protein_coding;misc_RNA;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2065547,2065882,+,MHC_I,ENSLAFG00000032604;100657492,NA;LOC100657492,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2066078,2066344,+,MHC_I,ENSLAFG00000032604;100657492,NA;LOC100657492,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2066951,2067235,+,IgC1_MHC_I_alpha3,ENSLAFG00000032604;100657492,NA;LOC100657492,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2076883,2077184,+,IgC1_MHC_Ia_HLA-B,scaffold_122_2:1,scaffold_122_2:1,NA,NA,FALSE
MHCI,elephant,scaffold_122,2156198,2156499,-,IgC1_MHC_Ia_HLA-B,scaffold_122_2:2,scaffold_122_2:2,NA,NA,FALSE
MHCI,elephant,scaffold_122,2166164,2166442,-,IgC1_MHC_I_alpha3,ENSLAFG00000028740;100656828,NA;LOC100656828,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2167056,2167322,-,MHC_I,ENSLAFG00000028740;100656828,NA;LOC100656828,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2167571,2167843,-,MHC_I,ENSLAFG00000028740;100656828,NA;LOC100656828,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2573454,2573735,+,MHC_I,ENSLAFG00000028821;100659102,NA;LOC100659102,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2574147,2574413,+,MHC_I,ENSLAFG00000028821;100659102,NA;LOC100659102,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2575152,2575433,+,IgC1_MHC_I_alpha3,ENSLAFG00000028821;100659102,NA;LOC100659102,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2603761,2604032,+,MHC_I,104847091,LOC104847091,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2663870,2664142,+,MHC_I,ENSLAFG00000028821;100659386,NA;LOC100659386,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2664390,2664653,+,MHC_I,ENSLAFG00000028821;100659386,NA;LOC100659386,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2665366,2665701,+,IgC1_MHC_I_alpha3,ENSLAFG00000028821;100659386,NA;LOC100659386,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_122,2694406,2694681,+,MHC_I,scaffold_122_3:1,scaffold_122_3:1,NA,NA,FALSE
MHCI,elephant,scaffold_122,2694936,2695097,+,MHC_I,scaffold_122_3:1,scaffold_122_3:1,NA,NA,FALSE
MHCI,elephant,scaffold_1307,1229,1630,+,IgC1_MHC_I_alpha3,ENSLAFG00000028657;100655144,NA;LOC100655144,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_135,731814,732086,-,IgC1_MHC_I_alpha3,100662153,LOC100662153,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_135,732731,732997,-,MHC_I,100662153,LOC100662153,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_135,733264,733344,-,MHC_I,100662153,LOC100662153,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_135,733346,733540,-,MHC_I,100662153,LOC100662153,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_135,851617,851958,+,IgC1_MHC_Ia_HLA-G,scaffold_135_1:1,scaffold_135_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_135,1161245,1161516,+,IgC1_MHC_Ia_HLA-B,scaffold_135_1:2,scaffold_135_1:2,NA,NA,FALSE
MHCI,elephant,scaffold_135,1763761,1764102,-,IgC1_MHC_I_alpha3,104847135,LOC104847135,pseudogene,aa_OG0015957,TRUE
MHCI,elephant,scaffold_135,1810104,1810492,-,IgC1_MHC_I_alpha3,104847135,LOC104847135,pseudogene,aa_OG0015957,TRUE
MHCI,elephant,scaffold_135,1811054,1811350,-,MHC_I,104847135,LOC104847135,pseudogene,aa_OG0015957,TRUE
MHCI,elephant,scaffold_135,1811605,1811877,-,MHC_I,104847135,LOC104847135,pseudogene,aa_OG0015957,TRUE
MHCI,elephant,scaffold_138,1634680,1634952,+,MHC_I,ENSLAFG00000022788;100664043,NA;LOC100664043,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1635263,1635526,+,MHC_I,ENSLAFG00000022788;100664043,NA;LOC100664043,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1636170,1636448,+,IgC1_MHC_I_alpha3,ENSLAFG00000022788;100664043,NA;LOC100664043,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1658414,1658686,+,MHC_I,111748672,LOC111748672,NA,NA,FALSE
MHCI,elephant,scaffold_138,1658983,1659060,+,MHC_I,111748672,LOC111748672,NA,NA,FALSE
MHCI,elephant,scaffold_138,1659066,1659221,+,MHC_I,111748672,LOC111748672,NA,NA,FALSE
MHCI,elephant,scaffold_138,1659854,1660130,+,IgC1_MHC_Ia_HLA-B,111748672,LOC111748672,ncRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1696977,1697249,+,MHC_I,ENSLAFG00000028669;100664612,NA;LOC100664612,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1697539,1697829,+,MHC_I,ENSLAFG00000028669;100664612,NA;LOC100664612,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1698488,1698787,+,IgC1_MHC_I_alpha3,ENSLAFG00000028669;100664612,NA;LOC100664612,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1775674,1775919,+,MHC_I,100664893,LOC100664893,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1776453,1776785,+,IgC1_MHC_I_alpha3,100664893,LOC100664893,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1793386,1793739,-,IgC1_MHC_I_alpha3,scaffold_138_2:1,scaffold_138_2:1,NA,NA,FALSE
MHCI,elephant,scaffold_138,1795602,1795739,-,MHC_I,scaffold_138_2:2,scaffold_138_2:2,NA,NA,FALSE
MHCI,elephant,scaffold_138,1806533,1806799,+,IgC1_MHC_I_alpha3,scaffold_138_2:3,scaffold_138_2:3,NA,NA,FALSE
MHCI,elephant,scaffold_138,1883674,1883946,+,MHC_I,100666034,LOC100666034,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_138,1884267,1884530,+,MHC_I,100666034,LOC100666034,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,64209,64535,-,IgC1_MHC_I_alpha3,scaffold_150_1:1,scaffold_150_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_150,66471,66611,-,MHC_I,scaffold_150_1:2,scaffold_150_1:2,NA,NA,FALSE
MHCI,elephant,scaffold_150,77364,77642,+,IgC1_MHC_I_alpha3,scaffold_150_1:3,scaffold_150_1:3,NA,NA,FALSE
MHCI,elephant,scaffold_150,148938,149222,+,MHC_I,ENSLAFG00000029650;100666699,NA;LOC100666699,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,149425,149697,+,MHC_I,ENSLAFG00000029650;100666699,NA;LOC100666699,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,150326,150634,+,IgC1_MHC_I_alpha3,ENSLAFG00000029650;100666699,NA;LOC100666699,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,198053,198334,+,IgC1_MHC_I_alpha3,scaffold_150_2:1,scaffold_150_2:1,NA,NA,FALSE
MHCI,elephant,scaffold_150,257960,258232,+,MHC_I,ENSLAFG00000028315;100667271,NA;LOC100667271,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,258434,258706,+,MHC_I,ENSLAFG00000028315;100667271,NA;LOC100667271,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,259344,259634,+,IgC1_MHC_I_alpha3,ENSLAFG00000028315;100667271,NA;LOC100667271,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,279426,279704,-,IgC1_MHC_I_alpha3,scaffold_150_3:1,scaffold_150_3:1,NA,NA,FALSE
MHCI,elephant,scaffold_150,301891,302172,+,IgC1_MHC_I_alpha3,scaffold_150_3:2,scaffold_150_3:2,NA,NA,FALSE
MHCI,elephant,scaffold_150,433194,433472,-,IgC1_MHC_I_alpha3,ENSLAFG00000028462;100667840,NA;LOC100667840,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,434123,434389,-,MHC_I,ENSLAFG00000028462;100667840,NA;LOC100667840,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,434621,434893,-,MHC_I,ENSLAFG00000028462;100667840,NA;LOC100667840,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,1225286,1225563,-,IgC1_MHC_I_alpha3,scaffold_150_4:1,scaffold_150_4:1,NA,NA,FALSE
MHCI,elephant,scaffold_150,1380663,1380938,+,MHC_I,ENSLAFG00000031105;100671814,NA;LOC100671814,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,1381865,1382089,+,MHC_I,ENSLAFG00000031105;100671814,NA;LOC100671814,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,1383005,1383304,+,IgC1_MHC_I_alpha3,ENSLAFG00000031105;100671814,NA;LOC100671814,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_150,1405989,1406253,-,IgC1_MHC_I_alpha3,111748863,LOC111748863,NA,NA,FALSE
MHCI,elephant,scaffold_150,1406848,1407078,-,MHC_I,111748863,LOC111748863,mRNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1407342,1407443,-,MHC_I,111748863,LOC111748863,misc_RNA;mRNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1407451,1407549,-,MHC_I,111748863,LOC111748863,misc_RNA;mRNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1445807,1445947,-,MHC_I,111748863,LOC111748863,misc_RNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1446214,1446390,-,MHC_I,111748863,LOC111748863,misc_RNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1446393,1446440,-,MHC_I,111748863,LOC111748863,misc_RNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_150,1446443,1446484,-,MHC_I,111748863,LOC111748863,misc_RNA,aa_OG0039134,TRUE
MHCI,elephant,scaffold_204,64201,64522,-,IgC1_MHC_Ia_HLA-B,scaffold_204_1:1,scaffold_204_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_232,16688,17081,+,MHC_I,100676200,LOC100676200,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,17284,17757,+,MHC_I,100676200,LOC100676200,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,18178,18486,+,IgC1_MHC_I_alpha3,100676200,LOC100676200,pseudogene,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,37528,37853,-,IgC1_MHC_I_alpha3,scaffold_232_1:1,scaffold_232_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_232,39010,39174,-,MHC_I,scaffold_232_1:2,scaffold_232_1:2,NA,NA,FALSE
MHCI,elephant,scaffold_232,39565,39726,-,MHC_I,scaffold_232_1:2,scaffold_232_1:2,NA,NA,FALSE
MHCI,elephant,scaffold_232,104655,104927,+,MHC_I,100676481,LOC100676481,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,105090,105413,+,MHC_I,100676481,LOC100676481,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,106026,106370,+,IgC1_MHC_I_alpha3,100676481,LOC100676481,mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,122493,122795,+,IgC1_MHC_I_alpha3,scaffold_232_2:1,scaffold_232_2:1,NA,NA,FALSE
MHCI,elephant,scaffold_232,147110,147550,-,IgC1_MHC_I_alpha3,scaffold_232_2:2,scaffold_232_2:2,NA,NA,FALSE
MHCI,elephant,scaffold_232,148646,148816,-,MHC_I,scaffold_232_2:3,scaffold_232_2:3,NA,NA,FALSE
MHCI,elephant,scaffold_232,177256,177522,+,MHC_I,ENSLAFG00000028488;100676766,NA;LOC100676766,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,177683,178006,+,MHC_I,ENSLAFG00000028488;100676766,NA;LOC100676766,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,178644,178952,+,IgC1_MHC_I_alpha3,ENSLAFG00000028488;100676766,NA;LOC100676766,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_232,211885,212274,-,IgC1_MHC_I_alpha3,scaffold_232_3:1,scaffold_232_3:1,NA,NA,FALSE
MHCI,elephant,scaffold_232,299325,299705,-,IgC1_MHC_I_alpha3,scaffold_232_3:2,scaffold_232_3:2,NA,NA,FALSE
MHCI,elephant,scaffold_232,301418,301594,-,MHC_I,scaffold_232_3:3,scaffold_232_3:3,NA,NA,FALSE
MHCI,elephant,scaffold_360,81849,82132,-,IgC1_MHC_Ia_HLA-B,scaffold_360_1:1,scaffold_360_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_360,91762,92046,-,IgC1_MHC_I_alpha3,ENSLAFG00000027580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,elephant,scaffold_360,92653,92919,-,MHC_I,ENSLAFG00000027580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,elephant,scaffold_360,93116,93451,-,MHC_I,ENSLAFG00000027580,NA,protein_coding,aa_OG0000000,TRUE
MHCI,elephant,scaffold_384,56532,56777,+,MHC_I,ENSLAFG00000027473;100676584,NA;LOC100676584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_384,57054,57317,+,MHC_I,ENSLAFG00000027473;100676584,NA;LOC100676584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_384,58028,58381,+,IgC1_MHC_I_alpha3,ENSLAFG00000027473;100676584,NA;LOC100676584,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_384,85139,85411,+,MHC_I,scaffold_384_1:1,scaffold_384_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_44,2261001,2261255,-,IgC1_MHC_I_alpha3,scaffold_44_1:1,scaffold_44_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_460,3709,3879,+,MHC_I,scaffold_460_1:1,scaffold_460_1:1,NA,NA,FALSE
MHCI,elephant,scaffold_460,31891,32196,-,IgC1_MHC_I_alpha3,scaffold_460_1:3,scaffold_460_1:3,NA,NA,FALSE
MHCI,elephant,scaffold_460,44919,45245,+,IgC1_MHC_I_alpha3,scaffold_460_1:4,scaffold_460_1:4,NA,NA,FALSE
MHCI,elephant,scaffold_460,71504,71800,-,IgC1_MHC_I_alpha3,ENSLAFG00000029735;100661889,NA;LOC100661889,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_460,72442,72705,-,MHC_I,ENSLAFG00000029735;100661889,NA;LOC100661889,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,elephant,scaffold_89,651327,651890,+,IgC1_MHC_I_alpha3,100662334,LOC100662334,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,644939,645232,-,IgC1_MHC_I_alpha3,ENSTGEG00000010248,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,645805,646134,-,MHC_I,ENSTGEG00000010248,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,646364,646621,-,MHC_I,ENSTGEG00000010248,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,761588,761740,-,IgC1_MHC_Ib_HLA-E,4_1:1,4_1:1,NA,NA,FALSE
MHCI,gelada,4,823426,823611,+,IgC1_MHC_I_alpha3,4_1:2,4_1:2,NA,NA,FALSE
MHCI,gelada,4,859015,859289,-,IgC1_MHC_I_alpha3,ENSTGEG00000010397,NA,NA,NA,FALSE
MHCI,gelada,4,859879,860162,-,MHC_I,ENSTGEG00000010397,NA,NA,NA,FALSE
MHCI,gelada,4,860408,860680,-,MHC_I,ENSTGEG00000010397,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,872893,873069,-,IgC1_MHC_Ib_HLA-Cw3-4,112622161,LOC112622161,NA,NA,FALSE
MHCI,gelada,4,873613,873870,-,MHC_I,112622161,LOC112622161,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,874111,874242,-,MHC_I,112622161,LOC112622161,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,874244,874345,-,MHC_I,112622161,LOC112622161,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1136703,1136783,-,MHC_I,4_3:1,4_3:1,NA,NA,FALSE
MHCI,gelada,4,1137024,1137257,-,MHC_I,4_3:1,4_3:1,NA,NA,FALSE
MHCI,gelada,4,1183664,1183957,-,IgC1_MHC_Ia_HLA-B,4_3:2,4_3:2,NA,NA,FALSE
MHCI,gelada,4,1184563,1184745,-,MHC_I,4_3:2,4_3:2,NA,NA,FALSE
MHCI,gelada,4,1184750,1184824,-,MHC_I,4_3:2,4_3:2,NA,NA,FALSE
MHCI,gelada,4,1268813,1269188,-,IgC1_MHC_Ia_HLA-B,112622164,LOC112622164,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1269785,1270030,-,MHC_I,112622164,LOC112622164,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1285797,1286067,-,IgC1_MHC_I_alpha3,112622210,LOC112622210,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1286209,1286280,-,MHC_I,112622210,LOC112622210,NA,NA,FALSE
MHCI,gelada,4,1293796,1294128,-,IgC1_MHC_I_alpha3,4_4:2,4_4:2,NA,NA,FALSE
MHCI,gelada,4,1295139,1295420,-,MHC_I,4_4:3,4_4:3,NA,NA,FALSE
MHCI,gelada,4,1381941,1382189,+,MHC_I,4_4:4,4_4:4,NA,NA,FALSE
MHCI,gelada,4,1382711,1383133,+,IgC1_MHC_Ia_HLA-B,4_4:4,4_4:4,NA,NA,FALSE
MHCI,gelada,4,1403705,1404050,-,IgC1_MHC_I_alpha3,4_4:5,4_4:5,NA,NA,FALSE
MHCI,gelada,4,1404749,1404994,-,MHC_I,4_4:6,4_4:6,NA,NA,FALSE
MHCI,gelada,4,1440793,1441038,+,MHC_I,4_4:7,4_4:7,NA,NA,FALSE
MHCI,gelada,4,1441737,1442082,+,IgC1_MHC_I_alpha3,4_4:8,4_4:8,NA,NA,FALSE
MHCI,gelada,4,1462652,1463074,-,IgC1_MHC_Ia_HLA-B,4_4:9,4_4:9,NA,NA,FALSE
MHCI,gelada,4,1463596,1463844,-,MHC_I,4_4:9,4_4:9,NA,NA,FALSE
MHCI,gelada,4,1550365,1550646,+,MHC_I,4_4:10,4_4:10,NA,NA,FALSE
MHCI,gelada,4,1551656,1551988,+,IgC1_MHC_I_alpha3,4_4:11,4_4:11,NA,NA,FALSE
MHCI,gelada,4,1559717,1559987,+,IgC1_MHC_I_alpha3,112622209,LOC112622209,misc_RNA,aa_OG0000000,TRUE
MHCI,gelada,4,1575753,1575998,+,MHC_I,112622166,LOC112622166,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1576595,1576970,+,IgC1_MHC_Ia_HLA-B,112622166,LOC112622166,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1660959,1661033,+,MHC_I,112622167,LOC112622167,mRNA,rna_OG0035915,TRUE
MHCI,gelada,4,1661038,1661208,+,MHC_I,112622167,LOC112622167,mRNA,rna_OG0035915,TRUE
MHCI,gelada,4,1661828,1662121,+,IgC1_MHC_Ia_HLA-B,112622167,LOC112622167,mRNA,rna_OG0035915,TRUE
MHCI,gelada,4,1701908,1702141,+,MHC_I,4_5:1,4_5:1,NA,NA,FALSE
MHCI,gelada,4,1702382,1702462,+,MHC_I,4_5:1,4_5:1,NA,NA,FALSE
MHCI,gelada,4,1973972,1974206,+,MHC_I,4_5:2,4_5:2,NA,NA,FALSE
MHCI,gelada,4,1974447,1974704,+,MHC_I,4_5:2,4_5:2,NA,NA,FALSE
MHCI,gelada,4,1975246,1975413,+,IgC1_MHC_I_alpha3,4_5:2,4_5:2,NA,NA,FALSE
MHCI,gelada,4,1987921,1988193,+,MHC_I,ENSTGEG00000011292;112622183,NA;LOC112622183,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1988439,1988753,+,MHC_I,112622183,LOC112622183,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,1989343,1989617,+,IgC1_MHC_I_alpha3,112622183,LOC112622183,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,2025031,2025216,-,IgC1_MHC_I_alpha3,4_6:1,4_6:1,NA,NA,FALSE
MHCI,gelada,4,2087350,2087502,+,IgC1_MHC_Ib_HLA-E,4_6:2,4_6:2,NA,NA,FALSE
MHCI,gelada,4,2197126,2197383,+,MHC_I,ENSTGEG00000011401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,2197613,2197942,+,MHC_I,ENSTGEG00000011401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,2198515,2198808,+,IgC1_MHC_I_alpha3,ENSTGEG00000011401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,29085289,29085660,+,IgC1_MHC_I_alpha3,4_7:1,4_7:1,NA,NA,FALSE
MHCI,gelada,4,32602886,32603131,+,MHC_I,4_7:2,4_7:2,NA,NA,FALSE
MHCI,gelada,4,32603833,32604178,+,IgC1_MHC_I_alpha3,4_7:3,4_7:3,NA,NA,FALSE
MHCI,gelada,4,32620441,32620719,-,IgC1_MHC_I_alpha3,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32621321,32621587,-,MHC_I,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32621827,32622099,-,MHC_I,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32669989,32670190,+,IgC1_MHC_I_alpha3,4_8:1,4_8:1,NA,NA,FALSE
MHCI,gelada,4,32673106,32673388,-,IgC1_MHC_I_alpha3,4_8:2,4_8:2,NA,NA,FALSE
MHCI,gelada,4,32673982,32674062,-,MHC_I,4_8:2,4_8:2,NA,NA,FALSE
MHCI,gelada,4,32674178,32674225,-,MHC_I,4_8:2,4_8:2,NA,NA,FALSE
MHCI,gelada,4,32684664,32684938,-,IgC1_MHC_I_alpha3,ENSTGEG00000005098,NA,NA,NA,FALSE
MHCI,gelada,4,32685546,32685812,-,MHC_I,ENSTGEG00000005098,NA,NA,NA,FALSE
MHCI,gelada,4,32686044,32686370,-,MHC_I,ENSTGEG00000005098,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32704040,32704294,-,IgC1_MHC_I_alpha3,ENSTGEG00000005128,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32704776,32704943,-,IgC1_MHC_Ia_HLA-B,ENSTGEG00000005128,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32705545,32705798,-,MHC_I,ENSTGEG00000005128,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32705992,32706246,-,MHC_I,ENSTGEG00000005128,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32741443,32741721,-,IgC1_MHC_I_alpha3,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32742326,32742592,-,MHC_I,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32742837,32743109,-,MHC_I,ENSTGEG00000005036,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,32759397,32759672,+,MHC_I,4_9:1,4_9:1,NA,NA,FALSE
MHCI,gelada,4,32760288,32760568,+,IgC1_MHC_Ia_HLA-B,4_9:1,4_9:1,NA,NA,FALSE
MHCI,gelada,4,32781662,32781895,+,MHC_I,112622098,LOC112622098,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32782136,32782216,+,MHC_I,112622098,LOC112622098,NA,NA,FALSE
MHCI,gelada,4,32800566,32800856,-,IgC1_MHC_Ia_HLA-G,ENSTGEG00000005202;112622411,NA;LOC112622411,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32801476,32801739,-,MHC_I,112622411,LOC112622411,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32801991,32802251,-,MHC_I,ENSTGEG00000005202;112622411,NA;LOC112622411,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32827338,32827616,-,IgC1_MHC_I_alpha3,ENSTGEG00000005222;112622411;112622399,NA;LOC112622411;LOC112622399,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32828219,32828509,-,MHC_I,ENSTGEG00000005222;112622411;112622399,NA;LOC112622411;LOC112622399,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32828719,32828976,-,MHC_I,112622411;112622399,LOC112622411;LOC112622399,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32874864,32875106,-,IgC1_MHC_I_alpha3,112622411,LOC112622411,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32875709,32875975,-,MHC_I,ENSTGEG00000005036;112622411,NA;LOC112622411,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32876215,32876487,-,MHC_I,ENSTGEG00000005036;112622411,NA;LOC112622411,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,32924301,32924549,-,IgC1_MHC_I_alpha3,4_11:1,4_11:1,NA,NA,FALSE
MHCI,gelada,4,32989376,32989648,+,MHC_I,ENSTGEG00000005329;112622418,NA;LOC112622418,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,gelada,4,32989891,32989977,+,MHC_I,ENSTGEG00000005329;112622418,NA;LOC112622418,NA,NA,FALSE
MHCI,gelada,4,33029084,33029302,+,MHC_I,ENSTGEG00000005329,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33029542,33029808,+,MHC_I,ENSTGEG00000005329;112622418,NA;LOC112622418,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,gelada,4,33030388,33030672,+,IgC1_MHC_I_alpha3,ENSTGEG00000005329;112622418,NA;LOC112622418,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,gelada,4,33074440,33074719,-,IgC1_MHC_I_alpha3,4_13:1,4_13:1,NA,NA,FALSE
MHCI,gelada,4,33075487,33075591,-,MHC_I,4_13:2,4_13:2,NA,NA,FALSE
MHCI,gelada,4,33075606,33075722,-,MHC_I,4_13:2,4_13:2,NA,NA,FALSE
MHCI,gelada,4,33268011,33268298,-,IgC1_MHC_I_alpha3,ENSTGEG00000005402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33268871,33269146,-,MHC_I,ENSTGEG00000005402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33269388,33269660,-,MHC_I,ENSTGEG00000005402,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33340764,33341036,+,MHC_I,ENSTGEG00000005473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33341279,33341545,+,MHC_I,ENSTGEG00000005473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33342126,33342404,+,IgC1_MHC_I_alpha3,ENSTGEG00000005473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33361563,33361850,-,IgC1_MHC_I_alpha3,ENSTGEG00000013638,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33362431,33362697,-,MHC_I,ENSTGEG00000013638,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33362939,33363211,-,MHC_I,ENSTGEG00000013638,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33391406,33391678,+,MHC_I,ENSTGEG00000015269;112622432,NA;LOC112622432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,4,33391920,33392186,+,MHC_I,ENSTGEG00000015269;112622432,NA;LOC112622432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,4,33392767,33393054,+,IgC1_MHC_I_alpha3,ENSTGEG00000015269;112622432,NA;LOC112622432,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,4,33759332,33759610,-,IgC1_MHC_I_alpha3,ENSTGEG00000029358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33760191,33760457,-,MHC_I,ENSTGEG00000029358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33760699,33760956,-,MHC_I,ENSTGEG00000029358,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33778612,33778917,-,MHC_I,4_14:1,4_14:1,NA,NA,FALSE
MHCI,gelada,4,33802990,33803268,-,IgC1_MHC_I_alpha3,ENSTGEG00000029359,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33803841,33804107,-,MHC_I,ENSTGEG00000029359,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33804332,33804592,-,MHC_I,ENSTGEG00000029359,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33846193,33846471,-,IgC1_MHC_I_alpha3,ENSTGEG00000029360,NA,NA,NA,FALSE
MHCI,gelada,4,33847031,33847324,-,MHC_I,ENSTGEG00000029360,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33847567,33847839,-,MHC_I,ENSTGEG00000029360,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33874641,33874919,-,IgC1_MHC_I_alpha3,ENSTGEG00000029361,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33875466,33875732,-,MHC_I,ENSTGEG00000029361,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33875976,33876248,-,MHC_I,ENSTGEG00000029361,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,4,33916712,33916990,-,IgC1_MHC_I_alpha3,ENSTGEG00000029362;112622433,NA;LOC112622433,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,33917592,33917855,-,MHC_I,112622433,LOC112622433,pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,33918099,33918212,-,MHC_I,ENSTGEG00000029362;112622433,NA;LOC112622433,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,33918215,33918388,-,MHC_I,ENSTGEG00000029362;112622433,NA;LOC112622433,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,gelada,4,33976125,33976447,+,IgC1_MHC_I_alpha3,4_16:1,4_16:1,NA,NA,FALSE
MHCI,gelada,4,35198542,35198886,+,IgC1_MHC_Ib_HLA-E,4_16:2,4_16:2,NA,NA,FALSE
MHCI,gelada,4,116263211,116263405,-,MHC_I,4_16:3,4_16:3,NA,NA,FALSE
MHCI,gelada,4,121131067,121131201,+,MHC_I,4_16:4,4_16:4,NA,NA,FALSE
MHCI,gelada,9,121228991,121229257,+,IgC1_MHC_Ia_H-2Dd,9_1:1,9_1:1,NA,NA,FALSE
MHCI,gelada,13,243965,244240,-,MHC_I,13_1:1,13_1:1,NA,NA,FALSE
MHCI,gelada,QGDE01000263.1,17936,18208,+,MHC_I,ENSTGEG00000029326,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000263.1,18451,18744,+,MHC_I,ENSTGEG00000029326,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000263.1,19304,19582,+,IgC1_MHC_I_alpha3,ENSTGEG00000029326,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000840.1,6946,7218,+,MHC_I,ENSTGEG00000029145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000840.1,7464,7730,+,MHC_I,ENSTGEG00000029145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000840.1,8333,8617,+,IgC1_MHC_I_alpha3,ENSTGEG00000029145,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01000857.1,9335,9587,-,IgC1_MHC_I_alpha3,112617751,LOC112617751,misc_RNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001135.1,2530,2814,-,IgC1_MHC_I_alpha3,ENSTGEG00000028917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001135.1,3397,3663,-,MHC_I,ENSTGEG00000028917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001135.1,3901,4173,-,MHC_I,ENSTGEG00000028917,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001780.1,1498,1770,+,MHC_I,ENSTGEG00000016322,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001780.1,2012,2278,+,MHC_I,ENSTGEG00000016322,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01001780.1,2855,3148,+,IgC1_MHC_I_alpha3,ENSTGEG00000016322,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01003240.1,4138,4410,+,MHC_I,ENSTGEG00000015392;112617631,NA;LOC112617631,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01003240.1,4653,4919,+,MHC_I,ENSTGEG00000015392;112617631,NA;LOC112617631,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01003696.1,1091,1357,-,MHC_I,ENSTGEG00000017071;112617695,NA;LOC112617695,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01003696.1,1598,1870,-,MHC_I,ENSTGEG00000017071;112617695,NA;LOC112617695,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01004744.1,1202,1474,+,MHC_I,ENSTGEG00000012401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01004744.1,1718,1984,+,MHC_I,ENSTGEG00000012401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01004744.1,2566,2853,+,IgC1_MHC_I_alpha3,ENSTGEG00000012401,NA,protein_coding,aa_OG0000000,TRUE
MHCI,gelada,QGDE01006595.1,1498,1770,+,MHC_I,ENSTGEG00000018267;112617929,NA;LOC112617929,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01006595.1,2012,2278,+,MHC_I,ENSTGEG00000018267;112617929,NA;LOC112617929,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,gelada,QGDE01008142.1,1535,1633,+,MHC_I,QGDE01008142.1_1:1,QGDE01008142.1_1:1,NA,NA,FALSE
MHCI,gelada,QGDE01008142.1,1644,1742,+,MHC_I,QGDE01008142.1_1:1,QGDE01008142.1_1:1,NA,NA,FALSE
MHCI,gelada,QGDE01011328.1,753,968,+,MHC_I,QGDE01011328.1_1:1,QGDE01011328.1_1:1,NA,NA,FALSE
MHCI,gelada,QGDE01012827.1,726,971,+,MHC_I,QGDE01012827.1_1:1,QGDE01012827.1_1:1,NA,NA,FALSE
MHCI,meerkat,6,14274769,14274906,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,meerkat,6,14274930,14275022,+,IgC1_MHC_I_alpha3,6_1:1,6_1:1,NA,NA,FALSE
MHCI,meerkat,6,14291882,14292151,+,MHC_I,ENSSSUG00005005434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,6,14293165,14293479,+,MHC_I,ENSSSUG00005005434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,6,14295329,14295676,+,IgC1_MHC_I_alpha3,ENSSSUG00005005434,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29033036,29033415,-,IgC1_MHC_I_alpha3,115295439,LOC115295439,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29033987,29034235,-,MHC_I,115295439,LOC115295439,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29034578,29034637,-,MHC_I,115295439,LOC115295439,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29034648,29034854,-,MHC_I,115295439,LOC115295439,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29098366,29098677,-,IgC1_MHC_I_alpha3,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29099251,29099520,-,MHC_I,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29099754,29100029,-,MHC_I,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29171952,29172062,-,MHC_I,ENSSSUG00005002797,NA,NA,NA,FALSE
MHCI,meerkat,7,29172257,29172529,-,MHC_I,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29174198,29174365,+,MHC_I,115295203,LOC115295203,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29174965,29175308,+,IgC1_MHC_I_alpha3,115295203,LOC115295203,pseudogene,aa_OG0000000,TRUE
MHCI,meerkat,7,29217705,29217959,+,MHC_I,7_2:1,7_2:1,NA,NA,FALSE
MHCI,meerkat,7,29218230,29218496,+,MHC_I,7_2:1,7_2:1,NA,NA,FALSE
MHCI,meerkat,7,29218885,29219004,+,IgC1_MHC_Ia_HLA-G,7_2:1,7_2:1,NA,NA,FALSE
MHCI,meerkat,7,29240385,29240660,+,MHC_I,ENSSSUG00005002940,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29240860,29241129,+,MHC_I,ENSSSUG00005002940,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29241703,29242083,+,IgC1_MHC_I_alpha3,ENSSSUG00005002940,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29244637,29245026,-,IgC1_MHC_I_alpha3,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29265586,29265717,+,MHC_I,7_3:1,7_3:1,NA,NA,FALSE
MHCI,meerkat,7,29266130,29266405,+,MHC_I,7_3:1,7_3:1,NA,NA,FALSE
MHCI,meerkat,7,29291846,29292108,-,IgC1_MHC_Ia_HLA-F,7_3:2,7_3:2,NA,NA,FALSE
MHCI,meerkat,7,29321895,29322092,+,MHC_I,ENSSSUG00005003026;115295440,NA;LOC115295440,protein_coding;pseudogene,aa_OG0000000;aa_OG0000679,TRUE
MHCI,meerkat,7,29322194,29322469,+,MHC_I,ENSSSUG00005003026;115295440,NA;LOC115295440,protein_coding;pseudogene,aa_OG0000000;aa_OG0000679,TRUE
MHCI,meerkat,7,29322670,29322939,+,MHC_I,ENSSSUG00005003026;115295440,NA;LOC115295440,protein_coding;pseudogene,aa_OG0000000;aa_OG0000679,TRUE
MHCI,meerkat,7,29323541,29323693,+,IgC1_MHC_I_alpha3,ENSSSUG00005003026;115295440,NA;LOC115295440,protein_coding;pseudogene,aa_OG0000000;aa_OG0000679,TRUE
MHCI,meerkat,7,29352071,29352338,+,IgC1_MHC_Ib_HLA-E,ENSSSUG00005003026;115295440,NA;LOC115295440,protein_coding;pseudogene,aa_OG0000000;aa_OG0000679,TRUE
MHCI,meerkat,7,29400201,29400470,-,MHC_I,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29400667,29400942,-,MHC_I,ENSSSUG00005002797,NA,protein_coding,aa_OG0000000,TRUE
MHCI,meerkat,7,29432313,29432597,-,IgC1_MHC_I_alpha3,ENSSSUG00005002797;115295437,NA;LOC115295437,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,meerkat,7,29433190,29433465,-,MHC_I,ENSSSUG00005002797;115295437,NA;LOC115295437,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,meerkat,7,29433688,29433963,-,MHC_I,ENSSSUG00005002797;115295437,NA;LOC115295437,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,meerkat,8,138439112,138439360,+,IgC1_MHC_Ia_RT1-Aa,8_1:1,8_1:1,NA,NA,FALSE
MHCI,meerkat,12,12112531,12112665,+,IgC1_MHC_H-2_TLA,12_1:1,12_1:1,NA,NA,FALSE
MHCI,meerkat,13,1696959,1697153,-,IgC1_MHC_Ia_HLA-B,13_1:1,13_1:1,NA,NA,FALSE
MHCI,meerkat,VCRZ01020463.1,202,445,-,IgC1_MHC_Ia_HLA-F,VCRZ01020463.1_1:1,VCRZ01020463.1_1:1,NA,NA,FALSE
MHCI,meerkat,VCRZ01047756.1,201,514,-,IgC1_MHC_Ia_HLA-F,VCRZ01047756.1_1:1,VCRZ01047756.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000055.1,338897,339142,+,MHC_I,ENSMUGG00000017696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,340815,341126,+,IgC1_MHC_I_alpha3,ENSMUGG00000017696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,363920,364231,+,IgC1_MHC_I_alpha3,ENSMUGG00000017696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,380346,380618,+,MHC_I,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,380931,381206,+,MHC_I,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,382904,383302,+,IgC1_MHC_I_alpha3,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,390749,391024,+,MHC_I,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,391220,391489,+,MHC_I,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,393604,393966,+,IgC1_MHC_I_alpha3,ENSMUGG00000017730;110543450,NA;LOC110543450,protein_coding;pseudogene,aa_OG0000000;aa_OG0000948,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,424486,424710,+,MHC_I,ENSMUGG00000017807;110543148,NA;LOC110543148,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,425024,425299,+,MHC_I,ENSMUGG00000017807;110543148,NA;LOC110543148,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,426985,427290,+,IgC1_MHC_I_alpha3,ENSMUGG00000017807;110543148,NA;LOC110543148,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,439003,439278,+,MHC_I,ENSMUGG00000017951;110543171,NA;LOC110543171,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000055.1,439457,439726,+,MHC_I,ENSMUGG00000017951;110543171,NA;LOC110543171,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000108.1,329623,330077,-,IgC1_MHC_Ia_HLA-G,NHTI01000108.1_1:1,NHTI01000108.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000342.1,961791,962026,-,MHC_I,NHTI01000342.1_1:1,NHTI01000342.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000382.1,660102,660242,-,IgC1_MHC_I_M144,NHTI01000382.1_1:1,NHTI01000382.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000873.1,71572,71958,+,IgC1_MHC_I_alpha3,NHTI01000873.1_1:1,NHTI01000873.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000873.1,80163,80375,+,IgC1_MHC_I_alpha3,NHTI01000873.1_1:2,NHTI01000873.1_1:2,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000873.1,125719,125841,+,MHC_I,110557147,LOC110557147,mRNA,aa_OG0029965,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,126057,126329,+,MHC_I,110557147,LOC110557147,mRNA,aa_OG0029965,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,134498,134737,+,MHC_I,ENSMUGG00000009548;110557146,NA;LOC110557146,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,134941,135213,+,MHC_I,ENSMUGG00000009548;110557146,NA;LOC110557146,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,137318,137623,+,IgC1_MHC_I_alpha3,ENSMUGG00000009548;110557146,NA;LOC110557146,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,137656,137784,+,IgC1_MHC_I_alpha3,ENSMUGG00000009548;110557146,NA;LOC110557146,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,145051,145650,+,MHC_I,ENSMUGG00000013675;110557149,NA;LOC110557149,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,146244,146629,+,IgC1_MHC_I_alpha3,110557146,LOC110557146,mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,147036,147233,+,IgC1_MHC_I_alpha3,110557146,LOC110557146,mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,158381,158653,+,MHC_I,ENSMUGG00000009473,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,158818,159087,+,MHC_I,ENSMUGG00000009473,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,159543,159926,+,IgC1_MHC_I_alpha3,ENSMUGG00000009473,H2-T23,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,171431,171697,+,MHC_I,ENSMUGG00000013688,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01000873.1,172777,172995,+,IgC1_MHC_I_alpha3,ENSMUGG00000013688,NA,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01000873.1,594243,594629,-,IgC1_MHC_I_alpha3,110557135,Mica,mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01001914.1,24728,24796,-,MHC_I,NHTI01001914.1_1:1,NHTI01001914.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01001914.1,40701,41006,-,IgC1_MHC_I_alpha3,ENSMUGG00000022965,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01001914.1,41716,41997,-,MHC_I,ENSMUGG00000022965,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01001914.1,42231,42497,-,MHC_I,ENSMUGG00000022965,H2-M2,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,27547,27786,-,IgC1_MHC_I_alpha3,NHTI01002170.1_1:1,NHTI01002170.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01002170.1,28380,28451,-,MHC_I,NHTI01002170.1_1:1,NHTI01002170.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01002170.1,218068,218763,+,MHC_I,ENSMUGG00000012603,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,219190,219522,+,IgC1_MHC_I_alpha3,ENSMUGG00000012603,H2-M5,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,227693,227875,+,MHC_I,ENSMUGG00000012612;110563053,NA;LOC110563053,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,228191,228460,+,MHC_I,ENSMUGG00000012612;110563053,NA;LOC110563053,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,231468,231746,+,IgC1_MHC_I_alpha3,ENSMUGG00000012612;110563053,NA;LOC110563053,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,240412,240699,+,MHC_I,ENSMUGG00000012632,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,240848,241135,+,MHC_I,ENSMUGG00000012632,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,241670,242002,+,IgC1_MHC_I_alpha3,ENSMUGG00000012632,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,265653,265925,+,MHC_I,ENSMUGG00000012664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,266147,266419,+,MHC_I,ENSMUGG00000012664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01002170.1,266801,267124,+,IgC1_MHC_I_alpha3,ENSMUGG00000012664,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01010203.1,5573,5950,-,IgC1_MHC_I_alpha3,ENSMUGG00000003797;110542889,NA;LOC110542889,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01010962.1,26294,26602,-,IgC1_MHC_I_alpha3,110543095,LOC110543095,mRNA,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01013921.1,393,665,-,MHC_I,110543569,LOC110543569,mRNA,aa_OG0039241,TRUE
MHCI,mongolian.gerbil,NHTI01013921.1,896,1168,-,MHC_I,110543569,LOC110543569,mRNA,aa_OG0039241,TRUE
MHCI,mongolian.gerbil,NHTI01015771.1,5386,5691,-,IgC1_MHC_I_alpha3,ENSMUGG00000004016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01015771.1,6783,7070,-,MHC_I,ENSMUGG00000004016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01015771.1,7260,7532,-,MHC_I,ENSMUGG00000004016,NA,protein_coding,aa_OG0000000,TRUE
MHCI,mongolian.gerbil,NHTI01035556.1,1368,1640,+,MHC_I,110544579,LOC110544579,mRNA,aa_OG0039241,TRUE
MHCI,mongolian.gerbil,NHTI01035556.1,1872,2147,+,MHC_I,110544579,LOC110544579,mRNA,aa_OG0039241,TRUE
MHCI,mongolian.gerbil,NHTI01043131.1,1494,1799,+,IgC1_MHC_I_alpha3,NHTI01043131.1_1:1,NHTI01043131.1_1:1,NA,NA,FALSE
MHCI,mongolian.gerbil,NHTI01046056.1,820,1095,+,MHC_I,ENSMUGG00000001227,NA,protein_coding,aa_OG0038786,TRUE
MHCI,mongolian.gerbil,NHTI01046056.1,1372,1671,+,IgC1_MHC_I_alpha3,ENSMUGG00000001227,NA,protein_coding,aa_OG0038786,TRUE
MHCI,mongolian.gerbil,NHTI01053772.1,637,909,+,MHC_I,ENSMUGG00000001725;110544827,NA;LOC110544827,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000179.1,4100177,4100284,+,MHC_I,PDMG02000179.1_1:1,PDMG02000179.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000209.1,3952,4248,-,IgC1_MHC_Ia_HLA-G,111525933,LOC111525933,pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,4856,5120,-,MHC_I,111525933,LOC111525933,pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,5344,5616,-,MHC_I,ENSPTEG00000035232;111525933,HLA-F;LOC111525933,protein_coding;pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,28135,28350,-,MHC_I,PDMG02000209.1_1:1,PDMG02000209.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000209.1,48478,48750,+,MHC_I,ENSPTEG00000035323;111534558,NA;LOC111534558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,48991,49257,+,MHC_I,ENSPTEG00000035323;111534558,NA;LOC111534558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,49867,50145,+,IgC1_MHC_I_alpha3,ENSPTEG00000035323;111534558,NA;LOC111534558,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,59490,59729,+,MHC_I,PDMG02000209.1_2:1,PDMG02000209.1_2:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000209.1,60263,60636,+,IgC1_MHC_Ia_HLA-B,PDMG02000209.1_2:1,PDMG02000209.1_2:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000209.1,89232,89516,-,IgC1_MHC_I_alpha3,ENSPTEG00000035232,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,90110,90376,-,MHC_I,ENSPTEG00000035232,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,90619,90897,-,MHC_I,ENSPTEG00000035232,HLA-F,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000209.1,3421484,3421726,-,IgC1_MHC_I_alpha3,PDMG02000209.1_3:1,PDMG02000209.1_3:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000875.1,253354,253572,+,MHC_I,111527873,LOC111527873,pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,253839,254096,+,MHC_I,111527873,LOC111527873,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000875.1,266299,266637,+,MHC_I,ENSPTEG00000028037;111527829,NA;LOC111527829,protein_coding;pseudogene,aa_OG0038282;aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,266883,267154,+,MHC_I,ENSPTEG00000028037;111527829,NA;LOC111527829,protein_coding;pseudogene,aa_OG0038282;aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,267733,268032,+,IgC1_MHC_Ia_HLA-B,111527829,LOC111527829,pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,307153,307326,-,IgC1_MHC_I_alpha3,111527834,LOC111527834,ncRNA,aa_OG0019920,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,365554,365766,+,IgC1_MHC_Ia_HLA-B,PDMG02000875.1_2:1,PDMG02000875.1_2:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000875.1,453821,454083,+,MHC_I,PDMG02000875.1_2:2,PDMG02000875.1_2:2,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02000875.1,538003,538260,+,MHC_I,ENSPTEG00000028221,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,538502,538819,+,MHC_I,ENSPTEG00000028221,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02000875.1,539391,539684,+,IgC1_MHC_I_alpha3,ENSPTEG00000028221,HLA-E,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001459.1,784,1066,-,IgC1_MHC_I_alpha3,PDMG02001459.1_1:1,PDMG02001459.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02001459.1,1657,1908,-,MHC_I,PDMG02001459.1_1:2,PDMG02001459.1_1:2,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02001560.1,799297,799554,-,IgC1_MHC_Ib_HLA-E,PDMG02001560.1_1:1,PDMG02001560.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02001821.1,9905,10213,-,IgC1_MHC_I_alpha3,ENSPTEG00000012473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001821.1,10792,11058,-,MHC_I,ENSPTEG00000012473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001821.1,11299,11571,-,MHC_I,ENSPTEG00000012473,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001946.1,2188,2460,+,MHC_I,ENSPTEG00000031306;113220516,NA;LOC113220516,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001946.1,6124,6288,+,MHC_I,ENSPTEG00000031306;113220517,NA;LOC113220517,protein_coding;ncRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001946.1,6297,6374,+,MHC_I,113220517,LOC113220517,ncRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02001946.1,6987,7271,+,IgC1_MHC_Ib_HLA-Cw3-4,113220517,LOC113220517,ncRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02004901.1,793,1065,+,MHC_I,ENSPTEG00000009665;111532245,NA;LOC111532245,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02004901.1,1307,1549,+,MHC_I,ENSPTEG00000009665;111532245,NA;LOC111532245,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02005420.1,648,920,-,MHC_I,ENSPTEG00000012326;113220589;111533290,NA;LOC113220589;LOC111533290,protein_coding;misc_RNA;mRNA,aa_OG0000000;aa_OG0019859,TRUE
MHCI,ugandan.red.colobus,PDMG02007227.1,437,571,+,MHC_I,PDMG02007227.1_1:1,PDMG02007227.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02007227.1,1131,1274,+,IgC1_MHC_Ia_HLA-B,PDMG02007227.1_1:1,PDMG02007227.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02007459.1,1904,2170,+,MHC_I,111533522,LOC111533522,misc_RNA,rna_OG0035915,TRUE
MHCI,ugandan.red.colobus,PDMG02007459.1,2742,3149,+,IgC1_MHC_Ia_HLA-B,ENSPTEG00000012257;111533522,NA;LOC111533522,protein_coding;misc_RNA,aa_OG0000000;rna_OG0035915,TRUE
MHCI,ugandan.red.colobus,PDMG02007617.1,1350,1676,+,IgC1_MHC_I_alpha3,ENSPTEG00000035417,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02007618.1,3663,3731,-,IgC1_MHC_I_alpha3,PDMG02007618.1_1:1,PDMG02007618.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02007871.1,882,1148,-,MHC_I,ENSPTEG00000038765,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02007871.1,1391,1663,-,MHC_I,ENSPTEG00000038765,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02007926.1,651,917,+,MHC_I,ENSPTEG00000000098;111532901,NA;LOC111532901,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02007926.1,1497,1784,+,IgC1_MHC_I_alpha3,ENSPTEG00000000098;111532901,NA;LOC111532901,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02008063.1,620,898,-,IgC1_MHC_I_alpha3,113220636,LOC113220636,misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02014315.1,1368,1640,+,MHC_I,ENSPTEG00000008365;111532585,NA;LOC111532585,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02014315.1,1882,2148,+,MHC_I,ENSPTEG00000008365;111532585,NA;LOC111532585,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02014315.1,2730,3014,+,IgC1_MHC_I_alpha3,ENSPTEG00000008365;111532585,NA;LOC111532585,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02018276.1,672,944,-,MHC_I,ENSPTEG00000003217;111534983,NA;LOC111534983,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02021973.1,54169,54453,-,IgC1_MHC_I_alpha3,ENSPTEG00000012676;111534119,NA;LOC111534119,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02021973.1,55034,55300,-,MHC_I,ENSPTEG00000012676;111534119,NA;LOC111534119,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02021973.1,55542,55814,-,MHC_I,ENSPTEG00000012676;111534119,NA;LOC111534119,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02025506.1,1693,1965,+,MHC_I,ENSPTEG00000003874;111531230,NA;LOC111531230,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02025506.1,2203,2469,+,MHC_I,ENSPTEG00000003874;111531230,NA;LOC111531230,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02025506.1,3052,3306,+,IgC1_MHC_I_alpha3,ENSPTEG00000003874;111531230,NA;LOC111531230,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02025506.1,3486,3539,+,IgC1_MHC_I_alpha3,ENSPTEG00000003874;111531230,NA;LOC111531230,protein_coding;mRNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02027689.1,34122,34406,-,IgC1_MHC_I_alpha3,111534717,LOC111534717,pseudogene,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02027689.1,35002,35268,-,MHC_I,111534717;ENSPTEG00000006586,LOC111534717;NA,pseudogene;protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02027689.1,35511,35774,-,MHC_I,111534717;ENSPTEG00000006586,LOC111534717;NA,pseudogene;protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02028691.1,2345,2617,+,MHC_I,ENSPTEG00000002874,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02028691.1,2860,3126,+,MHC_I,ENSPTEG00000002874,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02028691.1,3701,3985,+,IgC1_MHC_I_alpha3,ENSPTEG00000002874,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02028691.1,97015,97320,+,MHC_I,PDMG02028691.1_1:1,PDMG02028691.1_1:1,NA,NA,FALSE
MHCI,ugandan.red.colobus,PDMG02029778.1,29623,29901,-,IgC1_MHC_I_alpha3,ENSPTEG00000020385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02029778.1,30467,30742,-,MHC_I,ENSPTEG00000020385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02029778.1,30984,31256,-,MHC_I,ENSPTEG00000020385,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032026.1,2092,2124,+,MHC_I,111544502,LOC111544502,misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032026.1,2126,2263,+,MHC_I,111544502,LOC111544502,misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032026.1,2265,2366,+,MHC_I,111544502,LOC111544502,misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032026.1,2624,2889,+,MHC_I,ENSPTEG00000006074;111544502,NA;LOC111544502,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032026.1,3491,3772,+,IgC1_MHC_Ia_HLA-G,ENSPTEG00000006074;111544502,NA;LOC111544502,protein_coding;misc_RNA,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032817.1,3766,4059,-,IgC1_MHC_I_alpha3,ENSPTEG00000000696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032817.1,4639,4902,-,MHC_I,ENSPTEG00000000696,NA,protein_coding,aa_OG0000000,TRUE
MHCI,ugandan.red.colobus,PDMG02032817.1,5147,5419,-,MHC_I,ENSPTEG00000000696,NA,protein_coding,aa_OG0000000,TRUE
MHCII,human,chr2,29079570,29079722,-,IgC1_MHC_II_alpha_HLA-DQ,chr2_1:1,chr2_1:1,NA,NA,FALSE
MHCII,human,chr4,43388157,43388506,+,IgC1_MHC_II_beta_HLA-DP,ENSG00000277096,AC098590.2,processed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,32442450,32442698,+,MHC_II_alpha,ENSG00000204287,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,human,chr6,32443184,32443498,+,IgC1_MHC_II_alpha_HLA-DR,ENSG00000204287,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,human,chr6,32459842,32460063,-,MHC_II_beta,ENSG00000196301,HLA-DRB9,unprocessed_pseudogene,aa_OG0021258,TRUE
MHCII,human,chr6,32519353,32519652,-,IgC1_MHC_II_beta_HLA-DR,ENSG00000198502,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32521930,32522178,-,MHC_II_beta,ENSG00000198502,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32554673,32554972,-,IgC1_MHC_II_beta_HLA-DR,ENSG00000229391,HLA-DRB6,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,32557945,32558172,-,MHC_II_beta,ENSG00000229391,HLA-DRB6,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,32581540,32581839,-,IgC1_MHC_II_beta_HLA-DR,ENSG00000196126,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32584137,32584382,-,MHC_II_beta,ENSG00000196126,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32641300,32641557,+,MHC_II_alpha,ENSG00000196735,HLA-DQA1,protein_coding;nonsense_mediated_decay;retained_intron,aa_OG0000240,TRUE
MHCII,human,chr6,32641953,32642252,+,IgC1_MHC_II_alpha_HLA-DQ,ENSG00000196735,HLA-DQA1,protein_coding;nonsense_mediated_decay;retained_intron,aa_OG0000240,TRUE
MHCII,human,chr6,32658786,32658860,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000179344,HLA-DQB1,NA,NA,FALSE
MHCII,human,chr6,32658863,32658940,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000179344,HLA-DQB1,NA,NA,FALSE
MHCII,human,chr6,32661965,32662270,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000179344,HLA-DQB1,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000041,TRUE
MHCII,human,chr6,32664826,32665038,-,MHC_II_beta,ENSG00000179344,HLA-DQB1,retained_intron;protein_coding;nonsense_mediated_decay,aa_OG0000041,TRUE
MHCII,human,chr6,32731418,32731696,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000226030,HLA-DQB3,unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,32745155,32745412,+,MHC_II_alpha,ENSG00000237541,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,human,chr6,32745772,32746071,+,IgC1_MHC_II_alpha_HLA-DQ,ENSG00000237541,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,human,chr6,32755018,32755086,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000232629,HLA-DQB2,NA,NA,FALSE
MHCII,human,chr6,32755089,32755154,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000232629,HLA-DQB2,NA,NA,FALSE
MHCII,human,chr6,32758848,32759150,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000232629,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32761691,32761915,-,MHC_II_beta,ENSG00000232629,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,human,chr6,32814312,32814614,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSG00000241106;ENSG00000250264,HLA-DOB;AL669918.1,nonsense_mediated_decay;protein_coding;retained_intron,aa_OG0012340;aa_OG0005431,TRUE
MHCII,human,chr6,32815069,32815302,-,MHC_II_beta,ENSG00000241106;ENSG00000250264,HLA-DOB;AL669918.1,nonsense_mediated_decay;protein_coding;retained_intron,aa_OG0012340;aa_OG0005431,TRUE
MHCII,human,chr6,33069020,33069301,-,IgC1_MHC_II_alpha,ENSG00000231389,HLA-DPA1,protein_coding;retained_intron;processed_transcript,aa_OG0000240,TRUE
MHCII,human,chr6,33069636,33069896,-,MHC_II_alpha,ENSG00000231389,HLA-DPA1,protein_coding;retained_intron;processed_transcript,aa_OG0000240,TRUE
MHCII,human,chr6,33080674,33080910,+,MHC_II_beta,ENSG00000223865,HLA-DPB1,protein_coding;retained_intron;processed_transcript,aa_OG0000041,TRUE
MHCII,human,chr6,33084949,33085233,+,IgC1_MHC_II_beta_HLA-DP,ENSG00000223865,HLA-DPB1,protein_coding;processed_transcript,aa_OG0000041,TRUE
MHCII,human,chr6,33092120,33092398,-,IgC1_MHC_II_alpha,ENSG00000231461,HLA-DPA2,unprocessed_pseudogene,aa_OG0023115,TRUE
MHCII,human,chr6,33092911,33093147,-,MHC_II_alpha,ENSG00000231461,HLA-DPA2,unprocessed_pseudogene,aa_OG0023115,TRUE
MHCII,human,chr6,33116953,33117198,+,MHC_II_beta,ENSG00000224557,HLA-DPB2,processed_transcript;transcribed_unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,33127817,33128100,+,IgC1_MHC_II_beta_HLA-DP,ENSG00000224557,HLA-DPB2,transcribed_unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,human,chr6,33131206,33131352,-,MHC_II_alpha,ENSG00000237398;105375021_NC_000006,HLA-DPA3;LOC105375021_NC_000006.12,unprocessed_pseudogene;NA,rna_OG0032790;aa_OG0000041,TRUE
MHCII,human,chr19,12740635,12740880,-,IgC1_MHC_II_alpha_HLA-DQ,chr19_1:1,chr19_1:1,NA,NA,FALSE
MHCII,mouse,chr12,71684017,71684151,-,IgC1_MHC_II_alpha_HLA-DR,chr12_1:1,chr12_1:1,NA,NA,FALSE
MHCII,mouse,chr17,34074358,34074675,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUSG00000092383,H2-Pb,unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,mouse,chr17,34076057,34076137,-,MHC_II_beta,ENSMUSG00000092383,H2-Pb,unprocessed_pseudogene,aa_OG0000041,TRUE
MHCII,mouse,chr17,34084612,34084743,+,MHC_II_alpha,ENSMUSG00000098241,H2-Pa,unprocessed_pseudogene,rna_OG0047222,TRUE
MHCII,mouse,chr17,34085118,34085255,+,IgC1_MHC_II_alpha,ENSMUSG00000098241,H2-Pa,unprocessed_pseudogene,rna_OG0047222,TRUE
MHCII,mouse,chr17,34085380,34085570,+,IgC1_MHC_II_alpha,ENSMUSG00000098241,H2-Pa,unprocessed_pseudogene,rna_OG0047222,TRUE
MHCII,mouse,chr17,34241010,34241252,+,MHC_II_beta,ENSMUSG00000041538,H2-Ob,protein_coding;retained_intron;processed_transcript,aa_OG0012340,TRUE
MHCII,mouse,chr17,34242436,34242720,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUSG00000041538,H2-Ob,protein_coding;processed_transcript;retained_intron,aa_OG0012340,TRUE
MHCII,mouse,chr17,34264784,34265017,+,MHC_II_beta,ENSMUSG00000073421,H2-Ab1,processed_transcript;protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,mouse,chr17,34267335,34267619,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUSG00000073421,H2-Ab1,processed_transcript;protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,mouse,chr17,34283570,34283869,-,IgC1_MHC_II_alpha_I-A,ENSMUSG00000036594,H2-Aa,protein_coding;retained_intron;processed_transcript,aa_OG0000240,TRUE
MHCII,mouse,chr17,34284283,34284540,-,MHC_II_alpha,ENSMUSG00000036594,H2-Aa,protein_coding;retained_intron;processed_transcript,aa_OG0000240,TRUE
MHCII,mouse,chr17,34309614,34309835,+,MHC_II_beta,ENSMUSG00000060586,H2-Eb1,protein_coding;nonsense_mediated_decay;retained_intron,aa_OG0000041,TRUE
MHCII,mouse,chr17,34314169,34314453,+,IgC1_MHC_II_beta_I-E,ENSMUSG00000060586,H2-Eb1,protein_coding;nonsense_mediated_decay;retained_intron,aa_OG0000041,TRUE
MHCII,mouse,chr17,34333261,34333530,+,MHC_II_beta,ENSMUSG00000067341,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,mouse,chr17,34334211,34334504,+,IgC1_MHC_II_beta_HLA-DR,ENSMUSG00000067341,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,mouse,chr17,34343614,34343925,-,IgC1_MHC_II_alpha_I-EK,ENSMUSG00000036322;100504404_NC_000083,H2-Ea;H2-Ea_NC_000083.6,protein_coding;polymorphic_pseudogene;NA,aa_OG0000240,TRUE
MHCII,mouse,chr17,34344399,34344632,-,MHC_II_alpha,ENSMUSG00000036322;100504404_NC_000083,H2-Ea;H2-Ea_NC_000083.6,protein_coding;polymorphic_pseudogene;NA,aa_OG0000240,TRUE
MHCII,rat,20,3870025,3870345,-,MHC_II_beta,ENSRNOG00000061936;RGD:1595866,AC098547.2;RT1-Hb-ps1,processed_pseudogene;pseudogene,aa_OG0000041,TRUE
MHCII,rat,20,3879912,3880148,+,MHC_II_alpha,ENSRNOG00000026669,RT1-Ha,protein_coding;retained_intron,aa_OG0000240,TRUE
MHCII,rat,20,3880462,3880743,+,IgC1_MHC_II_alpha,ENSRNOG00000026669,RT1-Ha,protein_coding;retained_intron,aa_OG0000240,TRUE
MHCII,rat,20,4022330,4022563,+,MHC_II_beta,ENSRNOG00000000454,RT1-DOb,protein_coding;retained_intron,aa_OG0012340,TRUE
MHCII,rat,20,4024222,4024503,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRNOG00000000454,RT1-DOb,protein_coding;retained_intron,aa_OG0012340,TRUE
MHCII,rat,20,4045261,4045578,+,MHC_II_beta,ENSRNOG00000032708,RT1-Bb,protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,rat,20,4046843,4047136,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRNOG00000032708,RT1-Bb,protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,rat,20,4066943,4067242,-,IgC1_MHC_II_alpha_HLA-DQ,ENSRNOG00000000451,RT1-Ba,nonsense_mediated_decay;protein_coding;retained_intron,aa_OG0000240,TRUE
MHCII,rat,20,4067651,4067905,-,MHC_II_alpha,ENSRNOG00000000451,RT1-Ba,protein_coding;retained_intron,aa_OG0000240,TRUE
MHCII,rat,20,4091549,4091800,+,MHC_II_beta,ENSRNOG00000033215,RT1-Db1,protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,rat,20,4095049,4095354,+,IgC1_MHC_II_beta_HLA-DR,ENSRNOG00000033215,RT1-Db1,protein_coding;retained_intron,aa_OG0000041,TRUE
MHCII,rat,20,4116955,4117188,+,MHC_II_beta,ENSRNOG00000030431,RT1-Db2,protein_coding,aa_OG0000041,TRUE
MHCII,rat,20,4118227,4118508,+,IgC1_MHC_II_beta_HLA-DR,ENSRNOG00000030431,RT1-Db2,protein_coding,aa_OG0000041,TRUE
MHCII,rat,20,4129307,4129603,-,IgC1_MHC_II_alpha,ENSRNOG00000032844,RT1-Da,protein_coding;retained_intron,aa_OG0000240,TRUE
MHCII,rat,20,4130076,4130309,-,MHC_II_alpha,ENSRNOG00000032844,RT1-Da,protein_coding,aa_OG0000240,TRUE
MHCII,rat,20,5283194,5283475,-,IgC1_MHC_II_alpha,ENSRNOG00000045908;100911800,AABR07044416.1;LOC100911800,unprocessed_pseudogene;mRNA,aa_OG0000240,TRUE
MHCII,rat,20,5283789,5284025,-,MHC_II_alpha,ENSRNOG00000045908;100911800,AABR07044416.1;LOC100911800,unprocessed_pseudogene;mRNA,aa_OG0000240,TRUE
MHCII,rat,20,5293593,5293913,+,MHC_II_beta,ENSRNOG00000061980;100360320,AABR07044416.2;LOC100360320,unprocessed_pseudogene;misc_RNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562860.1,10807594,10807866,+,IgC1_MHC_II_beta_HLA-DR,DS562860.1_1:1,DS562860.1_1:1,NA,NA,FALSE
MHCII,guinea.pig,DS562870.1,38492125,38492415,-,IgC1_MHC_II_alpha,ENSCPOG00000035477,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38492717,38492968,-,MHC_II_alpha,ENSCPOG00000035477,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38510818,38511027,+,MHC_II_beta,ENSCPOG00000024142,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38534849,38535160,+,IgC1_MHC_II_beta_HLA-DP,ENSCPOG00000024142,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38596553,38596864,-,IgC1_MHC_II_beta_HLA-DP,ENSCPOG00000032859,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38601363,38601599,-,MHC_II_beta,ENSCPOG00000032859,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38612119,38612382,+,MHC_II_alpha,ENSCPOG00000002427,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38612641,38612931,+,IgC1_MHC_II_alpha,ENSCPOG00000002427,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38867784,38868017,+,MHC_II_beta,ENSCPOG00000033895,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,guinea.pig,DS562870.1,38869496,38869789,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCPOG00000033895,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,guinea.pig,DS562870.1,38917719,38917955,+,MHC_II_beta,ENSCPOG00000038606,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38920228,38920539,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCPOG00000038606,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38948901,38949194,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCPOG00000014463,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38949575,38949832,-,MHC_II_alpha,ENSCPOG00000014463,NA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,38978764,38978997,+,MHC_II_beta,100718695,LOC100718695,mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38981130,38981414,+,IgC1_MHC_II_beta_HLA-DQ_I-A,100718695,LOC100718695,mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,38984705,38984851,+,IgC1_MHC_II_beta_HLA-DQ_I-A,100718695,LOC100718695,NA,NA,FALSE
MHCII,guinea.pig,DS562870.1,39005347,39005628,-,IgC1_MHC_II_alpha_HLA-DQ,100735670,LOC100735670,mRNA,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,39006084,39006335,-,MHC_II_alpha,100735670,LOC100735670,mRNA,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,39084714,39084962,+,MHC_II_beta,ENSCPOG00000040083,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39087888,39088181,+,IgC1_MHC_II_beta_HLA-DR,ENSCPOG00000040083,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39118604,39118963,+,IgC1_MHC_II_beta_HLA-DR,100719524,LOC100719524,mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39131338,39131666,+,IgC1_MHC_II_beta_HLA-DR,DS562870.1_2:1,DS562870.1_2:1,NA,NA,FALSE
MHCII,guinea.pig,DS562870.1,39153300,39153560,+,MHC_II_beta,ENSCPOG00000003574;100719800,NA;LOC100719800,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39156062,39156355,+,IgC1_MHC_II_beta_HLA-DR,ENSCPOG00000003574;100719800,NA;LOC100719800,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39180861,39180935,+,MHC_II_beta,100720079,LOC100720079,pseudogene,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39180938,39180991,+,MHC_II_beta,100720079,LOC100720079,pseudogene,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39181497,39181764,+,IgC1_MHC_II_beta_HLA-DR,100720079,LOC100720079,pseudogene,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39204711,39204932,+,MHC_II_beta,100720632,LOC100720632,mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39205306,39205587,+,IgC1_MHC_II_beta_HLA-DR,100720632,LOC100720632,mRNA,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39230758,39230991,+,MHC_II_beta,ENSCPOG00000036465,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39232607,39232912,+,IgC1_MHC_II_beta_HLA-DR,ENSCPOG00000036465,NA,protein_coding,aa_OG0000041,TRUE
MHCII,guinea.pig,DS562870.1,39265237,39265530,-,IgC1_MHC_II_alpha,ENSCPOG00000012309,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,guinea.pig,DS562870.1,39265962,39266228,-,MHC_II_alpha,ENSCPOG00000012309,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,23669244,23669474,-,MHC_II_beta,ENSHGLG00000019389,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,23679328,23679642,+,MHC_II_alpha,ENSHGLG00000019266,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,23679860,23680141,+,IgC1_MHC_II_alpha,ENSHGLG00000019266,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,23848243,23848476,+,MHC_II_beta,ENSHGLG00000016652,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,nmr,JH602067.1,23849542,23849859,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSHGLG00000016652,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,nmr,JH602067.1,23860151,23860389,-,IgC1_MHC_II_alpha_HLA-DQ,JH602067.1_1:1,JH602067.1_1:1,NA,NA,FALSE
MHCII,nmr,JH602067.1,23897192,23897419,+,MHC_II_beta,ENSHGLG00000011013,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,23900055,23900354,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSHGLG00000011013,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,23942090,23942440,-,IgC1_MHC_II_alpha_HLA-DQ,ENSHGLG00000011398,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,23942775,23943026,-,MHC_II_alpha,ENSHGLG00000011398,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,24011243,24011488,+,MHC_II_beta,ENSHGLG00000011613,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24013716,24014045,+,IgC1_MHC_II_beta_HLA-DR,ENSHGLG00000011613,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24032142,24032381,+,MHC_II_beta,ENSHGLG00000011873,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24032758,24033069,+,IgC1_MHC_II_beta_HLA-DR,ENSHGLG00000011873,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24054624,24054869,+,MHC_II_beta,ENSHGLG00000012074,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24056489,24056797,+,IgC1_MHC_II_beta_HLA-DR,ENSHGLG00000012074,NA,protein_coding,aa_OG0000041,TRUE
MHCII,nmr,JH602067.1,24080936,24081229,-,IgC1_MHC_II_alpha,ENSHGLG00000012243,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,nmr,JH602067.1,24081671,24081904,-,MHC_II_alpha,ENSHGLG00000012243,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721893.1,10616480,10616617,+,MHC_II_beta,102009750,LOC102009750,pseudogene,aa_OG0000041,TRUE
MHCII,chinchilla,JH721893.1,10616650,10616934,+,IgC1_MHC_II_beta_HLA-DR,102009750,LOC102009750,pseudogene,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1112264,1112503,+,MHC_II_alpha,ENSCLAG00000009768,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1112951,1113232,+,IgC1_MHC_II_alpha,ENSCLAG00000009768,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1129336,1129674,-,IgC1_MHC_II_beta_HLA-DR,ENSCLAG00000013098,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1131307,1131552,-,MHC_II_beta,ENSCLAG00000013098,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1155542,1155850,-,IgC1_MHC_II_beta_HLA-DR,ENSCLAG00000016042,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1156165,1156383,-,MHC_II_beta,ENSCLAG00000016042,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1202173,1202478,-,IgC1_MHC_II_beta_HLA-DR,ENSCLAG00000016042;102020284,NA;LOC102020284,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1205878,1206099,-,MHC_II_beta,102020284,LOC102020284,mRNA,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1236590,1236829,-,MHC_II_beta,JH721897.1_1:1,JH721897.1_1:1,NA,NA,FALSE
MHCII,chinchilla,JH721897.1,1242025,1242321,-,IgC1_MHC_II_beta_HLA-DR,102009319,LOC102009319,mRNA,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1245570,1245725,-,MHC_II_beta,JH721897.1_2:1,JH721897.1_2:1,NA,NA,FALSE
MHCII,chinchilla,JH721897.1,1264493,1264798,-,IgC1_MHC_II_beta_HLA-DR,ENSCLAG00000016042,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1267558,1267890,-,MHC_II_beta,ENSCLAG00000016042,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1353725,1353976,+,MHC_II_alpha,ENSCLAG00000009507,NA,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1354420,1354701,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCLAG00000009507,NA,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1392364,1392495,-,IgC1_MHC_II_beta_HLA-DQ_I-A,JH721897.1_3:1,JH721897.1_3:1,NA,NA,FALSE
MHCII,chinchilla,JH721897.1,1395470,1395769,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCLAG00000011869,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1397755,1398033,-,MHC_II_beta,ENSCLAG00000011869,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinchilla,JH721897.1,1434494,1434607,+,MHC_II_alpha,JH721897.1_4:1,JH721897.1_4:1,NA,NA,FALSE
MHCII,chinchilla,JH721897.1,1445417,1445707,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCLAG00000011735,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,chinchilla,JH721897.1,1447296,1447529,-,MHC_II_beta,ENSCLAG00000011735,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,chinchilla,JH721897.1,1646434,1646715,-,IgC1_MHC_II_alpha,ENSCLAG00000010668,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1647006,1647266,-,MHC_II_alpha,ENSCLAG00000010668,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,chinchilla,JH721897.1,1658694,1658927,+,MHC_II_beta,ENSCLAG00000013126,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,kangaroo.rat,ABRO02100239.1,3690,4231,-,IgC1_MHC_II_beta_HLA-DP,106002769,LOC106002769,pseudogene,rna_OG0089034,TRUE
MHCII,kangaroo.rat,ABRO02100240.1,503,1065,-,IgC1_MHC_II_beta_HLA-DP,106002770,LOC106002770,pseudogene,rna_OG0089034,TRUE
MHCII,kangaroo.rat,ABRO02100243.1,43825,44311,-,MHC_II_beta,106002771,LOC106002771,pseudogene,rna_OG0089034,TRUE
MHCII,kangaroo.rat,ABRO02134663.1,511,744,-,MHC_II_beta,106002968,LOC106002968,pseudogene,aa_OG0000041,TRUE
MHCII,kangaroo.rat,ABRO02142394.1,268,809,-,IgC1_MHC_II_beta_HLA-DP,106002976,LOC106002976,pseudogene,rna_OG0089034,TRUE
MHCII,kangaroo.rat,KN672355.1,10456389,10456610,+,IgC1_MHC_II_alpha_I-EK,KN672355.1_1:1,KN672355.1_1:1,NA,NA,FALSE
MHCII,kangaroo.rat,KN672366.1,9313289,9313581,-,IgC1_MHC_II_beta_HLA-DQ_I-A,105983565,LOC105983565,pseudogene,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672366.1,9313606,9313806,-,MHC_II_beta,105983565,LOC105983565,pseudogene,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,489085,489321,-,MHC_II_beta,ENSDORG00000024606;105999877,NA;LOC105999877,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,489807,490043,-,MHC_II_beta,105999877,LOC105999877,mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,500858,501091,+,MHC_II_alpha,ENSDORG00000004500,NA,protein_coding,aa_OG0000240,TRUE
MHCII,kangaroo.rat,KN672548.1,501496,501822,+,IgC1_MHC_II_alpha,ENSDORG00000004500,NA,protein_coding,aa_OG0000240,TRUE
MHCII,kangaroo.rat,KN672548.1,639729,639962,+,MHC_II_beta,ENSDORG00000008310,NA,protein_coding,aa_OG0012340,TRUE
MHCII,kangaroo.rat,KN672548.1,664529,664831,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDORG00000011904,NA,protein_coding,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,696816,697099,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KN672548.1_1:1,KN672548.1_1:1,NA,NA,FALSE
MHCII,kangaroo.rat,KN672548.1,702698,702922,+,MHC_II_beta,ENSDORG00000006991;105999834,NA;LOC105999834,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,744459,744761,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDORG00000006991;105999834,NA;LOC105999834,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,775184,775486,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KN672548.1_2:1,KN672548.1_2:1,NA,NA,FALSE
MHCII,kangaroo.rat,KN672548.1,790213,790452,+,MHC_II_beta,ENSDORG00000029602;105999837,NA;LOC105999837,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,793977,794063,+,IgC1_MHC_II_beta_HLA-DR,ENSDORG00000029602,NA,protein_coding,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,808246,808479,+,MHC_II_beta,ENSDORG00000024908,NA,protein_coding,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,810909,811193,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDORG00000024908,NA,protein_coding,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672548.1,818605,818949,-,IgC1_MHC_II_alpha,ENSDORG00000014782,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,kangaroo.rat,KN672548.1,819370,819654,-,MHC_II_alpha,ENSDORG00000014782,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,kangaroo.rat,KN672829.1,25533,25760,+,MHC_II_beta,106001844,LOC106001844,mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672829.1,25533,25760,+,MHC_II_beta,106001844,LOC106001844,mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672829.1,29746,30048,+,IgC1_MHC_II_beta_HLA-DQ_I-A,106001844,LOC106001844,mRNA,aa_OG0000041,TRUE
MHCII,kangaroo.rat,KN672829.1,29746,30048,+,IgC1_MHC_II_beta_HLA-DQ_I-A,106001844,LOC106001844,mRNA,aa_OG0000041,TRUE
MHCII,deer.mouse,KI615389.1,9484224,9484790,-,IgC1_MHC_II_beta_HLA-DQ_I-A,102909892,LOC102909892,pseudogene,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616543.1,13792,14085,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPEMG00000012719,NA,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616543.1,16136,16363,-,MHC_II_beta,ENSPEMG00000012719,NA,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616543.1,55468,55878,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPEMG00000001796,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,deer.mouse,KI616543.1,56490,56723,-,MHC_II_beta,ENSPEMG00000001796,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,deer.mouse,KI616543.1,202484,202765,-,IgC1_MHC_II_alpha,ENSPEMG00000015442,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616543.1,203020,203340,-,MHC_II_alpha,ENSPEMG00000015442,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616543.1,218007,218387,+,MHC_II_beta,102915251,LOC102915251,mRNA,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616543.1,221896,222180,+,IgC1_MHC_II_beta_HLA-DQ_I-A,102915251,LOC102915251,mRNA,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,12757,13038,-,IgC1_MHC_II_alpha_I-A,ENSPEMG00000007095,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,13447,13695,-,MHC_II_alpha,ENSPEMG00000007095,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,73029,73325,+,MHC_II_beta,ENSPEMG00000015401,NA,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,75317,75610,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPEMG00000015401,NA,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,91703,92047,-,IgC1_MHC_II_alpha_HLA-DQ,ENSPEMG00000012679,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,94250,94501,-,MHC_II_alpha,ENSPEMG00000012679,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,116343,116597,+,MHC_II_beta,ENSPEMG00000002889,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,119742,120023,+,IgC1_MHC_II_beta_HLA-DR,ENSPEMG00000002889,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,159589,159837,+,MHC_II_beta,ENSPEMG00000006456,H2-Eb1,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,162622,162903,+,IgC1_MHC_II_beta_HLA-DR,ENSPEMG00000006456,H2-Eb1,protein_coding,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,171849,172205,-,IgC1_MHC_II_alpha,ENSPEMG00000008261,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,172658,172891,-,MHC_II_alpha,ENSPEMG00000008261,NA,protein_coding,aa_OG0000240,TRUE
MHCII,deer.mouse,KI616633.1,245932,246213,-,IgC1_MHC_II_beta_HLA-DR,102914939,LOC102914939,mRNA,aa_OG0000041,TRUE
MHCII,deer.mouse,KI616633.1,254977,255315,-,MHC_II_beta,102914939,LOC102914939,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,745900,746202,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCGRG00000017151,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,749527,749766,-,MHC_II_beta,ENSCGRG00000017151,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,761937,762191,+,MHC_II_alpha,ENSCGRG00000018375;100759913,NA;LOC100759913,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,chinese.hamster,JH000617.1,762431,762712,+,IgC1_MHC_II_alpha,ENSCGRG00000018375;100759913,NA;LOC100759913,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,chinese.hamster,JH000617.1,907248,907481,+,MHC_II_beta,ENSCGRG00000016223,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,chinese.hamster,JH000617.1,908448,908732,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCGRG00000016223,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,chinese.hamster,JH000617.1,939157,939450,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCGRG00000008607;100761373,H2-Ab1;LOC100761373,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,968206,968508,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCGRG00000011208,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,chinese.hamster,JH000617.1,968882,969130,-,MHC_II_alpha,ENSCGRG00000011208,H2-Aa,NA,NA,FALSE
MHCII,chinese.hamster,JH000617.1,1003908,1004162,+,MHC_II_beta,ENSCGRG00000013583;100761951,NA;LOC100761951,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,1008086,1008370,+,IgC1_MHC_II_beta_HLA-DR,ENSCGRG00000013583;100761951,NA;LOC100761951,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,1022189,1022434,+,MHC_II_beta,ENSCGRG00000005374;100762240,NA;LOC100762240,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,1023074,1023355,+,IgC1_MHC_II_beta_HLA-DR,ENSCGRG00000005374;100762240,NA;LOC100762240,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH000617.1,1034736,1034999,+,MHC_II_beta,113839332,LOC113839332,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,88754,89013,+,MHC_II_beta,100774413,LOC100774413,pseudogene,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,91040,91339,+,IgC1_MHC_II_beta_HLA-DR,100774413,LOC100774413,pseudogene,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,270716,270966,+,MHC_II_beta,ENSCGRG00000004676;100774703,NA;LOC100774703,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,273048,273332,+,IgC1_MHC_II_beta_HLA-DR,ENSCGRG00000004676;100774703,NA;LOC100774703,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,331501,331683,+,MHC_II_beta,100774993,LOC100774993,pseudogene,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,333668,333937,+,IgC1_MHC_II_beta_HLA-DR,100774993,LOC100774993,pseudogene,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,400967,401215,+,MHC_II_beta,ENSCGRG00000002150;100750512,NA;LOC100750512,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH001341.1,403201,403482,+,IgC1_MHC_II_beta_HLA-DR,ENSCGRG00000002150;100750512,NA;LOC100750512,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH002938.1,12911,13191,+,MHC_II_beta,113831514,LOC113831514,NA,NA,FALSE
MHCII,chinese.hamster,JH002938.1,16078,16347,+,IgC1_MHC_II_beta_HLA-DR,113831514,LOC113831514,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH002938.1,108948,109174,+,MHC_II_beta,JH002938.1_2:1,JH002938.1_2:1,NA,NA,FALSE
MHCII,chinese.hamster,JH003367.1,71739,72020,+,MHC_II_beta,JH003367.1_1:1,JH003367.1_1:1,NA,NA,FALSE
MHCII,chinese.hamster,JH003991.1,907,1191,+,IgC1_MHC_II_beta_HLA-DR,100766775,LOC100766775,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH003991.1,16785,17027,+,MHC_II_beta,100767068,LOC100767068,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH003991.1,17667,17951,+,IgC1_MHC_II_beta_HLA-DR,100767068,LOC100767068,mRNA,aa_OG0000041,TRUE
MHCII,chinese.hamster,JH003991.1,28247,28543,-,IgC1_MHC_II_alpha,ENSCGRG00000002846;100767639,H2-Ea;LOC100767639,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,chinese.hamster,JH003991.1,28895,29113,-,MHC_II_alpha,ENSCGRG00000002846;100767639,H2-Ea;LOC100767639,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,chinese.hamster,JH028115.1,3,251,-,IgC1_MHC_II_beta_HLA-DR,JH028115.1_1:1,JH028115.1_1:1,NA,NA,FALSE
MHCII,dmr,KN072613.1,66,230,-,IgC1_MHC_II_alpha_HLA-DQ,KN072613.1_1:1,KN072613.1_1:1,NA,NA,FALSE
MHCII,dmr,KN095661.1,1,201,-,MHC_II_beta,104861168,LOC104861168,pseudogene,aa_OG0000041,TRUE
MHCII,dmr,KN095789.1,30,245,-,MHC_II_beta,104861865,LOC104861865,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN111738.1,211,474,+,MHC_II_beta,104871065,LOC104871065,pseudogene,aa_OG0000041,TRUE
MHCII,dmr,KN113626.1,254,493,+,MHC_II_alpha,104871929,LOC104871929,mRNA,aa_OG0000240,TRUE
MHCII,dmr,KN113626.1,945,1226,+,IgC1_MHC_II_alpha,104871929,LOC104871929,mRNA,aa_OG0000240,TRUE
MHCII,dmr,KN118215.1,103,312,+,MHC_II_beta,104873141,LOC104873141,pseudogene,aa_OG0000041,TRUE
MHCII,dmr,KN120585.1,6038,6208,+,IgC1_MHC_II_beta_HLA-DQ_I-A,104860422,LOC104860422,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN120585.1,6354,6509,+,IgC1_MHC_II_beta_HLA-DQ_I-A,104860422,LOC104860422,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN120585.1,13062,13217,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KN120585.1_1:1,KN120585.1_1:1,NA,NA,FALSE
MHCII,dmr,KN120585.1,39198,39479,-,IgC1_MHC_II_alpha_HLA-DQ,ENSFDAG00000018057,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN120585.1,39950,40201,-,MHC_II_alpha,ENSFDAG00000018057,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN120960.1,11017,11274,+,MHC_II_alpha,ENSFDAG00000017019,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN120960.1,11674,11955,+,IgC1_MHC_II_alpha_HLA-DQ,ENSFDAG00000017019,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN120960.1,29713,29850,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KN120960.1_1:1,KN120960.1_1:1,NA,NA,FALSE
MHCII,dmr,KN120960.1,32767,33069,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSFDAG00000017990,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dmr,KN120960.1,35540,35758,-,MHC_II_beta,ENSFDAG00000017990,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dmr,KN121575.1,1320,1628,-,IgC1_MHC_II_beta_HLA-DR,104857949,LOC104857949,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122119.1,19087,19308,+,MHC_II_beta,ENSFDAG00000017367;104862963,NA;LOC104862963,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122119.1,22648,22887,+,IgC1_MHC_II_beta_HLA-DR,104862963,LOC104862963,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122119.1,41176,41409,+,MHC_II_beta,104862962,LOC104862962,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122119.1,44072,44356,+,IgC1_MHC_II_beta_HLA-DR,ENSFDAG00000017367;104862962,NA;LOC104862962,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122119.1,60131,60415,+,IgC1_MHC_II_beta_HLA-DR,KN122119.1_1:1,KN122119.1_1:1,NA,NA,FALSE
MHCII,dmr,KN122366.1,453,566,+,MHC_II_beta,104865999,LOC104865999,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122366.1,864,1118,+,IgC1_MHC_II_beta_HLA-DR,ENSFDAG00000007841;104865999,NA;LOC104865999,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN122366.1,20854,21051,+,MHC_II_beta,104866000,LOC104866000,pseudogene,aa_OG0019608,TRUE
MHCII,dmr,KN122517.1,3927385,3927486,+,IgC1_MHC_II_alpha_I-A,KN122517.1_1:1,KN122517.1_1:1,NA,NA,FALSE
MHCII,dmr,KN123170.1,26855,27001,-,IgC1_MHC_II_beta_HLA-DR,KN123170.1_1:1,KN123170.1_1:1,NA,NA,FALSE
MHCII,dmr,KN123170.1,27463,27576,-,MHC_II_beta,KN123170.1_1:1,KN123170.1_1:1,NA,NA,FALSE
MHCII,dmr,KN123529.1,2201,2509,-,IgC1_MHC_II_beta_HLA-DR,104876405,LOC104876405,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN123750.1,23720,23959,+,MHC_II_alpha,ENSFDAG00000005872,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN123750.1,24411,24692,+,IgC1_MHC_II_alpha,ENSFDAG00000005872,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dmr,KN123763.1,5221715,5221936,+,IgC1_MHC_II_alpha_I-A,KN123763.1_1:1,KN123763.1_1:1,NA,NA,FALSE
MHCII,dmr,KN123813.1,19369,19662,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSFDAG00000015337,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,dmr,KN123813.1,21046,21279,-,MHC_II_beta,ENSFDAG00000015337,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,dmr,KN123885.1,37778,38005,+,IgC1_MHC_II_alpha_HLA-DQ,KN123885.1_1:1,KN123885.1_1:1,NA,NA,FALSE
MHCII,dmr,KN124435.1,2463,2747,+,IgC1_MHC_II_beta_HLA-DR,104852060,LOC104852060,mRNA,aa_OG0000041,TRUE
MHCII,dmr,KN124435.1,15739,16020,-,IgC1_MHC_II_alpha,104852061,LOC104852061,mRNA,aa_OG0000240,TRUE
MHCII,dmr,KN124435.1,16472,16711,-,MHC_II_alpha,104852061,LOC104852061,mRNA,aa_OG0000240,TRUE
MHCII,dmr,KN124530.1,5356,5424,-,IgC1_MHC_II_beta_HLA-DR,KN124530.1_1:1,KN124530.1_1:1,NA,NA,FALSE
MHCII,dmr,KN124552.1,16671,16979,-,IgC1_MHC_II_beta_HLA-DR,104852757,LOC104852757,mRNA,aa_OG0000041,TRUE
MHCII,squirrel,JH393286.1,25712625,25712660,-,MHC_II_beta,JH393286.1_1:1,JH393286.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393286.1,25712668,25712871,-,MHC_II_beta,JH393286.1_1:1,JH393286.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393286.1,25732125,25732454,-,IgC1_MHC_II_beta_HLA-DP,ENSSTOG00000003567,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393286.1,25735303,25735554,-,MHC_II_beta,ENSSTOG00000003567,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393286.1,25747416,25747676,+,MHC_II_alpha,ENSSTOG00000003558,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393286.1,25748003,25748284,+,IgC1_MHC_II_alpha,ENSSTOG00000003558,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393286.1,25934573,25934806,+,MHC_II_beta,ENSSTOG00000003405,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,squirrel,JH393286.1,25935264,25935557,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSTOG00000003405,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,squirrel,JH393339.1,3372973,3373194,+,IgC1_MHC_II_alpha_HLA-DQ,JH393339.1_1:1,JH393339.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393483.1,1278327,1278620,+,IgC1_MHC_II_beta_HLA-DQ_I-A,JH393483.1_1:1,JH393483.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393537.1,18747,18968,+,MHC_II_beta,101968867,LOC101968867,pseudogene,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,20007,20356,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101968867,LOC101968867,pseudogene,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,170080,170394,-,IgC1_MHC_II_alpha_HLA-DQ,101969726,LOC101969726,pseudogene,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,171041,171271,-,MHC_II_alpha,101969726,LOC101969726,pseudogene,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,295205,295425,+,MHC_II_beta,JH393537.1_1:1,JH393537.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393537.1,296426,296704,+,IgC1_MHC_II_beta_HLA-DQ_I-A,JH393537.1_1:1,JH393537.1_1:1,NA,NA,FALSE
MHCII,squirrel,JH393537.1,314581,314880,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSTOG00000024250,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,315728,315793,-,MHC_II_alpha,ENSSTOG00000024250,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,315805,315978,-,MHC_II_alpha,ENSSTOG00000024250,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,363085,363294,+,MHC_II_beta,ENSSTOG00000020276,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,365864,366154,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSTOG00000020276,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,369068,369247,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSTOG00000020276,NA,NA,NA,FALSE
MHCII,squirrel,JH393537.1,374342,374653,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSTOG00000009632,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,375225,375476,-,MHC_II_alpha,ENSSTOG00000009632,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,456350,456601,+,MHC_II_beta,ENSSTOG00000019974,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,460138,460422,+,IgC1_MHC_II_beta_HLA-DR,ENSSTOG00000019974,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,524256,524519,+,MHC_II_beta,ENSSTOG00000034168,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,526533,526820,+,IgC1_MHC_II_beta_HLA-DR,ENSSTOG00000034168,NA,protein_coding,aa_OG0000041,TRUE
MHCII,squirrel,JH393537.1,541723,541983,-,IgC1_MHC_II_alpha,ENSSTOG00000010426,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393537.1,542456,542707,-,MHC_II_alpha,ENSSTOG00000010426,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,50509,50760,+,MHC_II_alpha,101957421,LOC101957421,pseudogene,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,51275,51574,+,IgC1_MHC_II_alpha_HLA-DQ,101957421,LOC101957421,pseudogene,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,74211,74432,-,MHC_II_beta,106145519,LOC106145519,mRNA,aa_OG0000041,TRUE
MHCII,squirrel,JH393892.1,176270,176437,+,MHC_II_alpha,ENSSTOG00000019853,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,176440,176517,+,MHC_II_alpha,ENSSTOG00000019853,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,177145,177450,+,IgC1_MHC_II_alpha_HLA-DQ,ENSSTOG00000019853,NA,protein_coding,aa_OG0000240,TRUE
MHCII,squirrel,JH393892.1,193618,193899,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101958566,LOC101958566,pseudogene,aa_OG0000041,TRUE
MHCII,squirrel,JH393892.1,194885,195096,-,MHC_II_beta,101958566,LOC101958566,pseudogene,aa_OG0000041,TRUE
MHCII,squirrel,JH394252.1,25518,25733,+,MHC_II_alpha,101966699,LOC101966699,mRNA,aa_OG0000240,TRUE
MHCII,squirrel,JH394252.1,26307,26612,+,IgC1_MHC_II_alpha_HLA-DQ,101966699,LOC101966699,mRNA,aa_OG0000240,TRUE
MHCII,squirrel,JH396930.1,1502,1708,+,MHC_II_beta,101977914,LOC101977914,pseudogene,aa_OG0000041,TRUE
MHCII,squirrel,JH396930.1,2734,2972,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101977914,LOC101977914,pseudogene,aa_OG0000041,TRUE
MHCII,golden.hamster,APMT01210252.1,6557,6790,+,MHC_II_alpha,ENSMAUG00000014504,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,golden.hamster,APMT01210252.1,7084,7380,+,IgC1_MHC_II_alpha,ENSMAUG00000014504,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,golden.hamster,APMT01210252.1,13582,13662,-,IgC1_MHC_II_beta_HLA-DQ_I-A,110339725,LOC110339725,ncRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,APMT01224678.1,1276,1590,-,MHC_II_beta,101829780,LOC101829780,mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,746902,747150,+,MHC_II_beta,101843452,LOC101843452,misc_RNA;mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,755358,755534,+,IgC1_MHC_II_beta_HLA-DR,KB708367.1_1:1,KB708367.1_1:1,NA,NA,FALSE
MHCII,golden.hamster,KB708367.1,785775,786074,+,MHC_II_beta,101843733,LOC101843733,mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,786753,787034,+,IgC1_MHC_II_beta_HLA-DR,101843733,LOC101843733,mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,848335,848511,-,IgC1_MHC_II_beta_HLA-DR,ENSMAUG00000018151;101834334,NA;LOC101834334,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,849231,849449,-,MHC_II_beta,ENSMAUG00000018151;110339466,NA;LOC110339466,protein_coding;ncRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,865235,865549,-,MHC_II_beta,101834334,LOC101834334,mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,898129,898377,+,MHC_II_alpha,ENSMAUG00000003363,H2-Aa,NA,NA,FALSE
MHCII,golden.hamster,KB708367.1,899009,899425,+,IgC1_MHC_II_alpha,ENSMAUG00000003363,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,golden.hamster,KB708367.1,918050,918358,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMAUG00000020395,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,919789,920061,-,MHC_II_beta,ENSMAUG00000020395,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.hamster,KB708367.1,951277,951558,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMAUG00000007698,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,golden.hamster,KB708367.1,952592,952825,-,MHC_II_beta,ENSMAUG00000007698,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,golden.hamster,KB708367.1,1044910,1045164,-,MHC_II_beta,101844521,LOC101844521,mRNA,aa_OG0012091,TRUE
MHCII,golden.hamster,KB708367.1,1113564,1113956,-,IgC1_MHC_II_alpha,101822444,LOC101822444,mRNA,aa_OG0000240,TRUE
MHCII,golden.hamster,KB708367.1,1114312,1114560,-,MHC_II_alpha,101822444,LOC101822444,mRNA,aa_OG0000240,TRUE
MHCII,golden.hamster,KB708367.1,1125441,1125686,+,MHC_II_beta,101822719,LOC101822719,mRNA,aa_OG0000041,TRUE
MHCII,golden.hamster,KB710886.1,4117,4371,-,MHC_II_beta,101833734,LOC101833734,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,JH996617.1,780,1004,-,MHC_II_beta,JH996617.1_1:1,JH996617.1_1:1,NA,NA,FALSE
MHCII,prairie.vole,JH996617.1,24358,24606,+,MHC_II_alpha,ENSMOCG00000016624,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,JH996617.1,24882,25289,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMOCG00000016624,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,JH996617.1,41532,41837,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101982376,LOC101982376,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,JH996617.1,43352,43579,-,MHC_II_beta,101982376,LOC101982376,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,JH996617.1,89585,89842,+,MHC_II_alpha,ENSMOCG00000008801,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,JH996617.1,90190,90498,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMOCG00000008801,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,JH996617.1,130849,131133,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101983237,LOC101983237,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,JH996617.1,132733,132963,-,MHC_II_beta,101983237,LOC101983237,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53594012,53594302,-,MHC_II_beta,101984208,LOC101984208,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53605083,53605316,+,MHC_II_alpha,ENSMOCG00000010963,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53605603,53605899,+,IgC1_MHC_II_alpha,ENSMOCG00000010963,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53739172,53739405,+,MHC_II_beta,ENSMOCG00000008562,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,prairie.vole,LG2,53739816,53740097,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMOCG00000008562,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,prairie.vole,LG2,53768466,53768693,+,MHC_II_beta,101985629,LOC101985629,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53770242,53770586,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101985629,LOC101985629,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53786081,53786269,-,MHC_II_alpha,101985914,LOC101985914,mRNA,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53830005,53830247,+,MHC_II_beta,ENSMOCG00000008439,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53831789,53832094,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMOCG00000008439,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53883796,53884128,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMOCG00000013355,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53886382,53886630,-,MHC_II_alpha,ENSMOCG00000013355,NA,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53916497,53916781,+,IgC1_MHC_II_beta_HLA-DR,LG2_1:1,LG2_1:1,NA,NA,FALSE
MHCII,prairie.vole,LG2,53927961,53928188,+,MHC_II_beta,ENSMOCG00000017941;101986197,NA;LOC101986197,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53931529,53931789,+,IgC1_MHC_II_beta_HLA-DR,ENSMOCG00000017941;101986197,NA;LOC101986197,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53944238,53944528,+,MHC_II_beta,113457553,LOC113457553,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53949579,53949863,+,IgC1_MHC_II_beta_HLA-DR,113457553,LOC113457553,mRNA,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53970371,53970616,+,MHC_II_beta,ENSMOCG00000019721,H2-Eb1,protein_coding,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53972240,53972521,+,IgC1_MHC_II_beta_HLA-DR,ENSMOCG00000019721,H2-Eb1,protein_coding,aa_OG0000041,TRUE
MHCII,prairie.vole,LG2,53977196,53977576,-,IgC1_MHC_II_alpha,ENSMOCG00000008786,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,53977961,53978200,-,MHC_II_alpha,ENSMOCG00000008786,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,prairie.vole,LG2,54034672,54034968,-,MHC_II_beta,101996807,LOC101996807,mRNA,aa_OG0000041,TRUE
MHCII,bmr,AXCS01000183.1,528,659,-,IgC1_MHC_II_alpha_HLA-DQ,103736445,LOC103736445,mRNA,aa_OG0000240,TRUE
MHCII,bmr,AXCS01281158.1,185,259,-,IgC1_MHC_II_beta_HLA-DQ_I-A,AXCS01281158.1_1:1,AXCS01281158.1_1:1,NA,NA,FALSE
MHCII,bmr,AXCS01293743.1,1,204,+,IgC1_MHC_II_beta_HLA-DQ_I-A,AXCS01293743.1_1:1,AXCS01293743.1_1:1,NA,NA,FALSE
MHCII,bmr,AXCS01309959.1,199,390,+,MHC_II_beta,AXCS01309959.1_1:1,AXCS01309959.1_1:1,NA,NA,FALSE
MHCII,bmr,AXCS01347890.1,559,825,-,MHC_II_beta,AXCS01347890.1_1:1,AXCS01347890.1_1:1,NA,NA,FALSE
MHCII,bmr,KL198607.1,8538,8750,-,MHC_II_beta,103748403,LOC103748403,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL198607.1,22777,23052,+,MHC_II_alpha,103747550,LOC103747550,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL198607.1,23361,23642,+,IgC1_MHC_II_alpha,103747550,LOC103747550,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL198607.1,42161,42496,-,IgC1_MHC_II_beta_HLA-DP,ENSNGAG00000014641,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL198607.1,47007,47261,-,MHC_II_beta,ENSNGAG00000014641,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL198607.1,59987,60241,+,MHC_II_alpha,103747703,LOC103747703,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL198607.1,60577,60912,+,IgC1_MHC_II_alpha,103747703,LOC103747703,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL198684.1,2415,2666,+,MHC_II_alpha,ENSNGAG00000003232,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bmr,KL198684.1,3050,3394,+,IgC1_MHC_II_alpha_HLA-DQ,ENSNGAG00000003232,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bmr,KL198684.1,19155,19445,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNGAG00000004104;103729174,NA;LOC103729174,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL198684.1,42614,42865,+,MHC_II_alpha,ENSNGAG00000000001,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bmr,KL198684.1,43315,43602,+,IgC1_MHC_II_alpha_HLA-DQ,ENSNGAG00000000001,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bmr,KL198684.1,68219,68518,-,IgC1_MHC_II_beta_HLA-DQ_I-A,103729158,LOC103729158,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL198684.1,70162,70389,-,MHC_II_beta,103729158,LOC103729158,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL199910.1,14520,14768,+,MHC_II_alpha,ENSNGAG00000000015,NA,NA,NA,FALSE
MHCII,bmr,KL199910.1,15143,15469,+,IgC1_MHC_II_alpha_HLA-DQ,ENSNGAG00000000015,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bmr,KL199910.1,22451,22750,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNGAG00000000072,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL199910.1,36340,36597,-,MHC_II_beta,ENSNGAG00000000072,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL200152.1,1134554,1134835,+,IgC1_MHC_II_beta_HLA-DR,KL200152.1_1:1,KL200152.1_1:1,NA,NA,FALSE
MHCII,bmr,KL200945.1,411,662,-,MHC_II_alpha,KL200945.1_1:1,KL200945.1_1:1,NA,NA,FALSE
MHCII,bmr,KL201602.1,7993,8397,+,MHC_II_beta,ENSNGAG00000001850,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL201602.1,10576,10866,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNGAG00000001850,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL201963.1,5445429,5445776,-,IgC1_MHC_II_beta_HLA-DP,103739735,LOC103739735,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL202546.1,27817,28065,+,MHC_II_alpha,103741891,LOC103741891,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL202546.1,28482,28781,+,IgC1_MHC_II_alpha,103741891,LOC103741891,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL202546.1,40170,40454,-,IgC1_MHC_II_beta_HLA-DR,ENSNGAG00000012412,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL202546.1,42113,42400,-,MHC_II_beta,ENSNGAG00000012412,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,bmr,KL202546.1,65395,65679,-,IgC1_MHC_II_beta_HLA-DR,ENSNGAG00000001832;103741892,NA;LOC103741892,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL202546.1,66503,66718,-,MHC_II_beta,ENSNGAG00000001832;103741892,NA;LOC103741892,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL202546.1,82246,82584,-,IgC1_MHC_II_beta_HLA-DR,115071999,LOC115071999,pseudogene,aa_OG0000041,TRUE
MHCII,bmr,KL203213.1,601,903,-,MHC_II_beta,103745136,LOC103745136,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL203213.1,16965,17255,+,MHC_II_alpha,103745137,LOC103745137,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL203213.1,17534,17851,+,IgC1_MHC_II_alpha,103745137,LOC103745137,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL203213.1,24524,24850,-,IgC1_MHC_II_beta_HLA-DP,103745138,LOC103745138,pseudogene,aa_OG0000013,TRUE
MHCII,bmr,KL203213.1,27639,27949,-,MHC_II_beta,103745138,LOC103745138,pseudogene,aa_OG0000013,TRUE
MHCII,bmr,KL203213.1,35624,35881,+,MHC_II_alpha,103745139,LOC103745139,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL203213.1,36169,36486,+,IgC1_MHC_II_alpha,103745139,LOC103745139,mRNA,aa_OG0000240,TRUE
MHCII,bmr,KL204940.1,1,282,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KL204940.1_1:1,KL204940.1_1:1,NA,NA,FALSE
MHCII,bmr,KL205017.1,15832,16116,-,IgC1_MHC_II_beta_HLA-DR,103724457,LOC103724457,mRNA,aa_OG0000041,TRUE
MHCII,bmr,KL205017.1,19766,20020,-,MHC_II_beta,103724457,LOC103724457,mRNA,aa_OG0000041,TRUE
MHCII,rabbit,1,79340043,79340162,+,IgC1_MHC_II_beta_HLA-DR,1_1:1,1_1:1,NA,NA,FALSE
MHCII,rabbit,2,24883740,24883874,+,IgC1_MHC_II_alpha_I-EK,2_1:1,2_1:1,NA,NA,FALSE
MHCII,rabbit,12,23072506,23072754,+,MHC_II_alpha,ENSOCUG00000009103,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,rabbit,12,23073123,23073491,+,IgC1_MHC_II_alpha,ENSOCUG00000009103,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,rabbit,12,23082011,23082070,-,IgC1_MHC_II_beta_HLA-DR,12_1:1,12_1:1,NA,NA,FALSE
MHCII,rabbit,12,23096738,23097022,-,IgC1_MHC_II_beta_HLA-DR,100348904,LOC100348904,mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23100594,23100836,-,MHC_II_beta,100348904,LOC100348904,mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23118176,23118460,-,IgC1_MHC_II_beta_HLA-DR,ENSOCUG00000029731;100349408,NA;LOC100349408,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23121067,23121318,-,MHC_II_beta,ENSOCUG00000030453;100349408,NA;LOC100349408,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23148968,23149252,-,IgC1_MHC_II_beta_HLA-DR,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23151393,23151629,-,MHC_II_beta,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23176509,23176820,-,IgC1_MHC_II_beta_HLA-DR,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23178659,23178886,-,MHC_II_beta,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23194577,23194903,-,IgC1_MHC_II_beta_HLA-DR,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23196664,23196879,-,MHC_II_beta,ENSOCUG00000029731,NA,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23257627,23257905,+,MHC_II_alpha,ENSOCUG00000002480,NA,protein_coding,aa_OG0000240,TRUE
MHCII,rabbit,12,23258266,23258598,+,IgC1_MHC_II_alpha_HLA-DQ,ENSOCUG00000002480,NA,protein_coding,aa_OG0000240,TRUE
MHCII,rabbit,12,23280426,23280731,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOCUG00000002485;100351163,NA;LOC100351163,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23285533,23285760,-,MHC_II_beta,ENSOCUG00000002485;100351163,NA;LOC100351163,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,rabbit,12,23330420,23330719,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOCUG00000029437,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,rabbit,12,23331578,23331811,-,MHC_II_beta,ENSOCUG00000029437,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,rabbit,12,23544103,23544384,-,IgC1_MHC_II_alpha,ENSOCUG00000003319;100352927,NA;LOC100352927,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,rabbit,12,23544615,23544920,-,MHC_II_alpha,ENSOCUG00000003319;100352927,NA;LOC100352927,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,rabbit,12,23555981,23556190,+,MHC_II_beta,ENSOCUG00000008721,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23558765,23559058,+,IgC1_MHC_II_beta_HLA-DP,ENSOCUG00000008721,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,rabbit,12,23571299,23571591,+,IgC1_MHC_II_beta_HLA-DP,12_2:1,12_2:1,NA,NA,FALSE
MHCII,rabbit,12,59412568,59412885,-,IgC1_MHC_II_beta_HLA-DR,12_2:2,12_2:2,NA,NA,FALSE
MHCII,tasmanian.devil,GL835602.1,116323,116508,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL835602.1_1:1,GL835602.1_1:1,NA,NA,FALSE
MHCII,tasmanian.devil,GL841577.1,2428144,2428302,+,IgC1_MHC_II_beta_HLA-DR,GL841577.1_1:1,GL841577.1_1:1,NA,NA,FALSE
MHCII,tasmanian.devil,GL849604.1,2510238,2510532,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100926904,LOC100926904,pseudogene,NA,TRUE
MHCII,tasmanian.devil,GL849604.1,2510575,2510682,-,MHC_II_beta,100926904,LOC100926904,pseudogene,NA,TRUE
MHCII,tasmanian.devil,GL849604.1,2510687,2510791,-,MHC_II_beta,100926904,LOC100926904,pseudogene,NA,TRUE
MHCII,tasmanian.devil,GL849850.1,400953,401015,-,IgC1_MHC_II_beta,111720009,LOC111720009,pseudogene,aa_OG0000002,TRUE
MHCII,tasmanian.devil,GL849850.1,401062,401226,-,IgC1_MHC_II_beta_HLA-DR,111720009,LOC111720009,pseudogene,aa_OG0000002,TRUE
MHCII,tasmanian.devil,GL849850.1,401303,401458,-,MHC_II_beta,111720009,LOC111720009,pseudogene,aa_OG0000002,TRUE
MHCII,tasmanian.devil,GL856751.1,1861831,1861980,-,IgC1_MHC_II_beta_I-E,GL856751.1_1:1,GL856751.1_1:1,NA,NA,FALSE
MHCII,tasmanian.devil,GL856793.1,969245,969530,+,IgC1_MHC_II_beta_HLA-DQ_I-A,GL856793.1_1:1,GL856793.1_1:1,NA,NA,FALSE
MHCII,tasmanian.devil,GL856886.1,295456,295683,+,MHC_II_beta,ENSSHAG00000007210;100922474,NA;LOC100922474,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857093.1,43389,43637,+,MHC_II_beta,ENSSHAG00000001984;100917964,NA;LOC100917964,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857093.1,46831,47115,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSHAG00000001984;111720851,NA;LOC111720851,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857093.1,131634,131915,-,IgC1_MHC_II_beta,ENSSHAG00000004955,NA,protein_coding,aa_OG0028093,TRUE
MHCII,tasmanian.devil,GL857093.1,132665,132895,-,MHC_II_beta,ENSSHAG00000004955,NA,protein_coding,aa_OG0028093,TRUE
MHCII,tasmanian.devil,GL857093.1,160351,160608,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100918744,LOC100918744,mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857093.1,173575,173859,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100919004,LOC100919004,mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857093.1,175335,175559,-,MHC_II_beta,100919004,LOC100919004,mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857649.1,21823,22066,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100918911,LOC100918911,pseudogene,aa_OG0000002,TRUE
MHCII,tasmanian.devil,GL857649.1,23861,24040,-,MHC_II_beta,100918911,LOC100918911,pseudogene,aa_OG0000002,TRUE
MHCII,tasmanian.devil,GL857661.1,22963,23244,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSHAG00000002008;100920224,NA;LOC100920224,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857661.1,24750,24983,-,MHC_II_beta,ENSSHAG00000002008;100920224,NA;LOC100920224,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL857681.1,56334,56615,-,IgC1_MHC_II_alpha,ENSSHAG00000003189,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,tasmanian.devil,GL857681.1,57088,57357,-,MHC_II_alpha,ENSSHAG00000003189,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,tasmanian.devil,GL860930.1,4557,4841,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSHAG00000000770,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tasmanian.devil,GL861703.1,1115237,1115569,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL861703.1_1:1,GL861703.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000014.1,1366647,1366906,+,IgC1_MHC_II_beta_HLA-DP,MSTS01000014.1_1:1,MSTS01000014.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000024.1,12770683,12771045,+,IgC1_MHC_II_beta_HLA-DR,MSTS01000024.1_1:1,MSTS01000024.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000030.1,421730,422275,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000011727;110209430,NA;LOC110209430,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000034.1,9428600,9428698,+,IgC1_MHC_II_beta_HLA-DQ_I-A,MSTS01000034.1_1:1,MSTS01000034.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000035.1,14403904,14403999,-,IgC1_MHC_II_beta_HLA-DR,MSTS01000035.1_1:1,MSTS01000035.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000039.1,500371,500547,+,MHC_II_beta,110211176,LOC110211176,misc_RNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01000039.1,500591,500884,+,IgC1_MHC_II_beta_HLA-DQ_I-A,110211176,LOC110211176,misc_RNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01000067.1,2895990,2896196,-,IgC1_MHC_II_alpha_HLA-DR,MSTS01000067.1_1:1,MSTS01000067.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000076.1,1349664,1349935,+,IgC1_MHC_II_beta_HLA-DP,MSTS01000076.1_1:1,MSTS01000076.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000088.1,2935632,2935934,-,IgC1_MHC_II_beta_HLA-DQ_I-A,110218187,LOC110218187,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000088.1,2935947,2936177,-,MHC_II_beta,110218187,LOC110218187,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000205.1,3863477,3863665,+,MHC_II_beta,110196945,LOC110196945,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000205.1,3863718,3864008,+,IgC1_MHC_II_beta_HLA-DQ_I-A,110196945,LOC110196945,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000206.1,687098,687366,-,IgC1_MHC_II_beta,MSTS01000206.1_1:1,MSTS01000206.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,212705,212917,+,MHC_II_alpha,MSTS01000255.1_1:1,MSTS01000255.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,967287,967583,-,IgC1_MHC_II_beta_HLA-DQ_I-A,MSTS01000255.1_2:1,MSTS01000255.1_2:1,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,969337,969615,-,MHC_II_beta,MSTS01000255.1_2:1,MSTS01000255.1_2:1,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,1050762,1050875,-,MHC_II_beta,ENSPCIG00000008365,NA,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,1051981,1052232,+,MHC_II_beta,ENSPCIG00000008365,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1052670,1052957,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000008365,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1071993,1072271,-,IgC1_MHC_II_alpha,110199340,LOC110199340,pseudogene,rna_OG0156405,TRUE
MHCII,koala,MSTS01000255.1,1072697,1072951,-,MHC_II_alpha,110199340,LOC110199340,pseudogene,rna_OG0156405,TRUE
MHCII,koala,MSTS01000255.1,1092915,1093124,+,MHC_II_beta,MSTS01000255.1_3:1,MSTS01000255.1_3:1,NA,NA,FALSE
MHCII,koala,MSTS01000255.1,1120910,1121143,+,MHC_II_beta,ENSPCIG00000008365,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1121592,1121870,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000008365,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1141699,1141986,-,IgC1_MHC_II_alpha,ENSPCIG00000018833,Phci-DBA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1142415,1142657,-,MHC_II_alpha,ENSPCIG00000018833,Phci-DBA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1155856,1156074,+,MHC_II_beta,ENSPCIG00000008365;110199403,NA;LOC110199403,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1156467,1156748,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000008365;110199403,NA;LOC110199403,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01000255.1,1176289,1176573,-,IgC1_MHC_II_alpha,ENSPCIG00000018833,Phci-DBA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1176997,1177239,-,MHC_II_alpha,ENSPCIG00000018833,Phci-DBA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1210441,1210722,-,IgC1_MHC_II_alpha,ENSPCIG00000018830,Phci-DAA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1211206,1211451,-,MHC_II_alpha,ENSPCIG00000018830,Phci-DAA,protein_coding,aa_OG0000240,TRUE
MHCII,koala,MSTS01000255.1,1425416,1425646,+,MHC_II_beta,ENSPCIG00000018816,NA,protein_coding,aa_OG0028169,TRUE
MHCII,koala,MSTS01000255.1,1428145,1428450,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000018816,NA,protein_coding,aa_OG0028169,TRUE
MHCII,koala,MSTS01000302.1,21999,22193,+,IgC1_MHC_II_beta_HLA-DR,MSTS01000302.1_1:1,MSTS01000302.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000302.1,47439,47663,+,MHC_II_beta,ENSPCIG00000033849,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000302.1,49275,49559,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000033849,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000401.1,3292,3486,+,IgC1_MHC_II_beta_HLA-DR,MSTS01000401.1_1:1,MSTS01000401.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000401.1,3504,3548,+,IgC1_MHC_II_beta_HLA-DQ_I-A,MSTS01000401.1_1:1,MSTS01000401.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000401.1,25132,25422,-,IgC1_MHC_II_beta_HLA-DQ_I-A,110203280,LOC110203280,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000401.1,83904,84146,+,MHC_II_beta,ENSPCIG00000025879,NA,protein_coding,aa_OG0028093,TRUE
MHCII,koala,MSTS01000401.1,84544,84834,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000025879,NA,protein_coding,aa_OG0028093,TRUE
MHCII,koala,MSTS01000401.1,145723,146013,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000034190;110203282,NA;LOC110203282,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000401.1,147810,147998,-,MHC_II_beta,ENSPCIG00000034190;110203282,NA;LOC110203282,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000544.1,61250,61444,-,IgC1_MHC_II_beta_HLA-DR,MSTS01000544.1_1:1,MSTS01000544.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000544.1,68791,68985,+,MHC_II_beta,ENSPCIG00000030650,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000544.1,70776,71066,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000030650,NA,protein_coding,aa_OG0000041,TRUE
MHCII,koala,MSTS01000639.1,49742,50023,-,IgC1_MHC_II_beta_HLA-DQ_I-A,110204088,LOC110204088,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000639.1,51778,51816,-,MHC_II_beta,110204088,LOC110204088,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000639.1,51819,51866,-,MHC_II_beta,110204088,LOC110204088,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000639.1,51869,52000,-,MHC_II_beta,110204088,LOC110204088,pseudogene,aa_OG0000041,TRUE
MHCII,koala,MSTS01000646.1,38506,38700,-,IgC1_MHC_II_beta_HLA-DR,MSTS01000646.1_1:1,MSTS01000646.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000833.1,22562,22756,+,IgC1_MHC_II_beta_HLA-DR,MSTS01000833.1_1:1,MSTS01000833.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000833.1,22774,22818,+,IgC1_MHC_II_beta_HLA-DQ_I-A,MSTS01000833.1_1:1,MSTS01000833.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01000840.1,12943,13232,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000034391;110204317,NA;LOC110204317,protein_coding;pseudogene,aa_OG0030901;aa_OG0000041,TRUE
MHCII,koala,MSTS01000840.1,15030,15260,-,MHC_II_beta,ENSPCIG00000034391;110204317,NA;LOC110204317,protein_coding;pseudogene,aa_OG0030901;aa_OG0000041,TRUE
MHCII,koala,MSTS01001027.1,23078,23272,+,IgC1_MHC_II_beta_HLA-DR,MSTS01001027.1_1:1,MSTS01001027.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01001087.1,21542,21736,+,IgC1_MHC_II_beta_HLA-DR,MSTS01001087.1_1:1,MSTS01001087.1_1:1,NA,NA,FALSE
MHCII,koala,MSTS01001202.1,5012,5203,+,MHC_II_beta,ENSPCIG00000033077;110204537,NA;LOC110204537,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01001202.1,6997,7287,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCIG00000033077;110204537,NA;LOC110204537,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,koala,MSTS01001592.1,6717,6911,+,IgC1_MHC_II_beta_HLA-DR,MSTS01001592.1_1:1,MSTS01001592.1_1:1,NA,NA,FALSE
MHCII,armadillo,JH563057.1,207904,208179,-,IgC1_MHC_II_beta_HLA-DR,101443424,LOC101443424,pseudogene,rna_OG0116624,TRUE
MHCII,armadillo,JH563057.1,220790,220996,+,MHC_II_alpha,ENSDNOG00000049556,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH563057.1,221425,221673,+,IgC1_MHC_II_alpha,ENSDNOG00000049556,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,6042,6338,+,MHC_II_beta,ENSDNOG00000035697,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,armadillo,JH569424.1,6742,7041,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDNOG00000035697,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,armadillo,JH569424.1,56623,57087,-,IgC1_MHC_II_alpha_HLA-DQ,JH569424.1_1:1,JH569424.1_1:1,NA,NA,FALSE
MHCII,armadillo,JH569424.1,57320,57554,-,MHC_II_alpha,JH569424.1_1:1,JH569424.1_1:1,NA,NA,FALSE
MHCII,armadillo,JH569424.1,130453,130662,+,MHC_II_beta,ENSDNOG00000005002;101435064,NA;LOC101435064,protein_coding;pseudogene,aa_OG0000041;aa_OG0000697,TRUE
MHCII,armadillo,JH569424.1,133585,133869,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDNOG00000005002;101435064,NA;LOC101435064,protein_coding;pseudogene,aa_OG0000041;aa_OG0000697,TRUE
MHCII,armadillo,JH569424.1,144439,144720,-,IgC1_MHC_II_alpha_HLA-DQ,ENSDNOG00000004997,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,145152,145409,-,MHC_II_alpha,ENSDNOG00000004997,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,171909,172298,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101440773,LOC101440773,mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,184482,184874,-,IgC1_MHC_II_alpha_HLA-DQ,ENSDNOG00000043776,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,185188,185448,-,MHC_II_alpha,ENSDNOG00000043776,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,250866,251198,+,MHC_II_beta,ENSDNOG00000031400;101436345,NA;LOC101436345,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,253901,254302,+,IgC1_MHC_II_beta_HLA-DR,ENSDNOG00000031400;101436345,NA;LOC101436345,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,275104,275427,-,IgC1_MHC_II_alpha,111758671,LOC111758671,pseudogene,rna_OG0092939,TRUE
MHCII,armadillo,JH569424.1,275825,276078,-,MHC_II_alpha,111758671,LOC111758671,pseudogene,rna_OG0092939,TRUE
MHCII,armadillo,JH569424.1,283051,283275,+,MHC_II_beta,101437028,LOC101437028,mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,286041,286325,+,IgC1_MHC_II_beta_HLA-DR,101437028,LOC101437028,mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,331753,332021,-,IgC1_MHC_II_alpha_HLA-DR,101442080,LOC101442080,pseudogene,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,332566,332679,-,MHC_II_alpha,101442080,LOC101442080,pseudogene,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,348417,348623,-,IgC1_MHC_II_alpha,JH569424.1_2:1,JH569424.1_2:1,NA,NA,FALSE
MHCII,armadillo,JH569424.1,348965,349179,-,MHC_II_alpha,JH569424.1_2:1,JH569424.1_2:1,NA,NA,FALSE
MHCII,armadillo,JH569424.1,358886,359119,+,MHC_II_beta,ENSDNOG00000018640,NA,protein_coding,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,361573,361917,+,IgC1_MHC_II_beta_HLA-DR,ENSDNOG00000018640,NA,protein_coding,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,406341,406610,-,IgC1_MHC_II_alpha_HLA-DR,101442967,LOC101442967,pseudogene,rna_OG0092939,TRUE
MHCII,armadillo,JH569424.1,407030,407137,-,MHC_II_alpha,101442967,LOC101442967,pseudogene,rna_OG0092939,TRUE
MHCII,armadillo,JH569424.1,407140,407283,-,MHC_II_alpha,101442967,LOC101442967,pseudogene,rna_OG0092939,TRUE
MHCII,armadillo,JH569424.1,415012,415236,+,MHC_II_beta,ENSDNOG00000038037;101443412,NA;LOC101443412,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,420125,420424,+,IgC1_MHC_II_beta_HLA-DR,ENSDNOG00000038037;101443412,NA;LOC101443412,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH569424.1,465670,465957,-,IgC1_MHC_II_alpha,ENSDNOG00000009313,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH569424.1,466173,466421,-,MHC_II_alpha,ENSDNOG00000009313,NA,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH578991.1,902989,903129,-,MHC_II_beta,ENSDNOG00000045287;101415145,NA;LOC101415145,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,armadillo,JH578991.1,919785,920069,-,IgC1_MHC_II_beta_HLA-DP,ENSDNOG00000037384,NA,protein_coding,aa_OG0000041,TRUE
MHCII,armadillo,JH578991.1,922913,923155,-,MHC_II_beta,ENSDNOG00000037384,NA,protein_coding,aa_OG0000041,TRUE
MHCII,armadillo,JH578991.1,931762,932022,+,MHC_II_alpha,ENSDNOG00000043328,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH578991.1,932314,932637,+,IgC1_MHC_II_alpha,ENSDNOG00000043328,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,armadillo,JH583847.1,458982,459092,-,IgC1_MHC_II_alpha_HLA-DQ,JH583847.1_1:1,JH583847.1_1:1,NA,NA,FALSE
MHCII,hedgehog,GeneScaffold_7538,1649,1945,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSEEUG00000009892,NA,protein_coding,aa_OG0000041,TRUE
MHCII,hedgehog,GeneScaffold_7538,5312,5530,-,MHC_II_beta,ENSEEUG00000009892,NA,protein_coding,aa_OG0000041,TRUE
MHCII,hedgehog,GeneScaffold_7538,5810,6046,-,MHC_II_beta,ENSEEUG00000009892,NA,protein_coding,aa_OG0000041,TRUE
MHCII,hedgehog,NW_006804260.1,995691,995906,+,MHC_II_alpha,NW_006804260.1_1:1,NW_006804260.1_1:1,NA,NA,FALSE
MHCII,hedgehog,NW_006804260.1,996485,996775,+,IgC1_MHC_II_alpha,NW_006804260.1_1:1,NW_006804260.1_1:1,NA,NA,FALSE
MHCII,hedgehog,NW_006804260.1,1016317,1016649,-,IgC1_MHC_II_beta_HLA-DR,103117417,LOC103117417,mRNA,aa_OG0000041,TRUE
MHCII,hedgehog,NW_006804260.1,1022071,1022295,-,MHC_II_beta,103117417,LOC103117417,mRNA,aa_OG0000041,TRUE
MHCII,hedgehog,NW_006804260.1,1057657,1057938,-,IgC1_MHC_II_alpha_HLA-DQ,NW_006804260.1_2:1,NW_006804260.1_2:1,NA,NA,FALSE
MHCII,hedgehog,NW_006804260.1,1058358,1058609,-,MHC_II_alpha,NW_006804260.1_2:1,NW_006804260.1_2:1,NA,NA,FALSE
MHCII,hedgehog,NW_006804260.1,1146639,1146875,+,MHC_II_beta,103117419,LOC103117419,mRNA,aa_OG0000041,TRUE
MHCII,hedgehog,NW_006804260.1,1150211,1150513,+,IgC1_MHC_II_beta_HLA-DQ_I-A,103117419,LOC103117419,mRNA,aa_OG0000041,TRUE
MHCII,hedgehog,NW_006804260.1,1186952,1187248,-,IgC1_MHC_II_beta_HLA-DQ_I-A,103117420,LOC103117420,mRNA,aa_OG0012340,TRUE
MHCII,hedgehog,NW_006804260.1,1188398,1188631,-,MHC_II_beta,103117420,LOC103117420,mRNA,aa_OG0012340,TRUE
MHCII,hedgehog,scaffold_252013,1296,1481,+,IgC1_MHC_II_alpha_HLA-DQ,scaffold_252013_1:1,scaffold_252013_1:1,NA,NA,FALSE
MHCII,hedgehog,scaffold_257961,6552,6744,-,MHC_II_beta,scaffold_257961_1:1,scaffold_257961_1:1,NA,NA,FALSE
MHCII,hedgehog,scaffold_291552,5356,5580,-,MHC_II_beta,scaffold_291552_1:1,scaffold_291552_1:1,NA,NA,FALSE
MHCII,hedgehog,scaffold_312986,16950,17282,+,IgC1_MHC_II_beta_HLA-DR,scaffold_312986_1:1,scaffold_312986_1:1,NA,NA,FALSE
MHCII,hedgehog,scaffold_335859,12517,12768,+,MHC_II_alpha,ENSEEUG00000006949,NA,protein_coding,aa_OG0000240,TRUE
MHCII,hedgehog,scaffold_335859,13188,13469,+,IgC1_MHC_II_alpha_HLA-DQ,ENSEEUG00000006949,NA,protein_coding,aa_OG0000240,TRUE
MHCII,hedgehog,scaffold_83373,6472,6687,+,MHC_II_alpha,ENSEEUG00000010134,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,hedgehog,scaffold_83373,7266,7556,+,IgC1_MHC_II_alpha,ENSEEUG00000010134,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,GeneScaffold_5074,4396,4673,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000007162,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,GeneScaffold_5074,46734,46844,-,MHC_II_alpha,GeneScaffold_5074_1:1,GeneScaffold_5074_1:1,NA,NA,FALSE
MHCII,shrew,GeneScaffold_5074,90606,90836,-,MHC_II_beta,ENSSARG00000007162,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,GeneScaffold_6699,4246,4530,-,IgC1_MHC_II_beta_HLA-DR,ENSSARG00000004301,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,GeneScaffold_6699,7072,7320,-,MHC_II_beta,ENSSARG00000004301,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,GeneScaffold_7037,144598,144672,+,MHC_II_beta,GeneScaffold_7037_1:1,GeneScaffold_7037_1:1,NA,NA,FALSE
MHCII,shrew,GeneScaffold_7042,78514,78762,-,IgC1_MHC_II_beta_HLA-DR,ENSSARG00000013144,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,GeneScaffold_7042,89523,89765,+,MHC_II_alpha,ENSSARG00000013172,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,GeneScaffold_7042,90190,90489,+,IgC1_MHC_II_alpha,ENSSARG00000013172,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,NW_004545915.1,8642651,8642764,-,IgC1_MHC_II_beta_HLA-DQ_I-A,NW_004545915.1_1:1,NW_004545915.1_1:1,NA,NA,FALSE
MHCII,shrew,NW_004545915.1,8644566,8644850,-,IgC1_MHC_II_beta_HLA-DR,NW_004545915.1_1:1,NW_004545915.1_1:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4269136,4269210,-,MHC_II_beta,NW_004545963.1_1:1,NW_004545963.1_1:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4560880,4561179,+,MHC_II_beta,101558910,LOC101558910,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4563468,4563785,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101558910,LOC101558910,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4597063,4597344,-,IgC1_MHC_II_alpha_HLA-DQ,NW_004545963.1_2:1,NW_004545963.1_2:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4597728,4597979,-,MHC_II_alpha,NW_004545963.1_2:1,NW_004545963.1_2:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4629727,4629837,+,MHC_II_alpha,NW_004545963.1_2:2,NW_004545963.1_2:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4630951,4631228,+,IgC1_MHC_II_alpha_I-A,NW_004545963.1_2:2,NW_004545963.1_2:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4649918,4650160,+,MHC_II_beta,101559440,LOC101559440,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4657321,4657473,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101559440,LOC101559440,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4692360,4692539,+,MHC_II_alpha,101537059,LOC101537059,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4711163,4711411,+,MHC_II_beta,101537059,LOC101537059,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4715482,4715784,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101537059,LOC101537059,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4751212,4751471,-,IgC1_MHC_II_alpha_HLA-DQ,NW_004545963.1_3:1,NW_004545963.1_3:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4758089,4758304,+,MHC_II_beta,101537584,LOC101537584,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4767540,4767861,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101537584,LOC101537584,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4784486,4784596,+,MHC_II_alpha,NW_004545963.1_4:1,NW_004545963.1_4:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4816186,4816410,+,MHC_II_beta,101537862,LOC101537862,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4825292,4825569,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101537862,LOC101537862,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4870349,4870528,+,MHC_II_alpha,101537862,LOC101537862,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4887374,4887589,+,MHC_II_beta,101538134,LOC101538134,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4891495,4891797,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101538134,LOC101538134,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4918377,4918609,+,MHC_II_beta,101538397,LOC101538397,pseudogene,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4952483,4952644,+,MHC_II_alpha,NW_004545963.1_5:1,NW_004545963.1_5:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,4976744,4976995,+,MHC_II_beta,101538664,LOC101538664,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,4980852,4981154,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101538664,LOC101538664,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5004216,5004496,-,IgC1_MHC_II_alpha_HLA-DQ,NW_004545963.1_6:1,NW_004545963.1_6:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5009531,5009746,+,MHC_II_beta,101538664,LOC101538664,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5017264,5017568,+,IgC1_MHC_II_beta_HLA-DQ_I-A,NW_004545963.1_7:1,NW_004545963.1_7:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5036102,5036314,-,MHC_II_alpha,NW_004545963.1_7:2,NW_004545963.1_7:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5046863,5047093,+,MHC_II_beta,101538932,LOC101538932,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5050270,5050572,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101538932,LOC101538932,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5113499,5113630,+,MHC_II_alpha,NW_004545963.1_8:1,NW_004545963.1_8:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5134720,5134935,+,MHC_II_beta,101539188,LOC101539188,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5138048,5138350,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101539188,LOC101539188,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5165753,5165982,+,MHC_II_beta,NW_004545963.1_9:1,NW_004545963.1_9:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5187567,5187683,+,MHC_II_alpha,NW_004545963.1_9:2,NW_004545963.1_9:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5203246,5203461,+,MHC_II_beta,101539716,LOC101539716,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5207431,5207733,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101539716,LOC101539716,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5246403,5246683,-,IgC1_MHC_II_alpha_HLA-DQ,NW_004545963.1_10:1,NW_004545963.1_10:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5300814,5301095,-,IgC1_MHC_II_alpha_HLA-DQ,NW_004545963.1_10:2,NW_004545963.1_10:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5301501,5301758,-,MHC_II_alpha,NW_004545963.1_10:2,NW_004545963.1_10:2,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5376346,5376594,+,MHC_II_beta,101540504,LOC101540504,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5382097,5382381,+,IgC1_MHC_II_beta_HLA-DR,101540504,LOC101540504,mRNA,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5400961,5401260,-,IgC1_MHC_II_alpha,NW_004545963.1_11:1,NW_004545963.1_11:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5401685,5401927,-,MHC_II_alpha,NW_004545963.1_11:1,NW_004545963.1_11:1,NA,NA,FALSE
MHCII,shrew,NW_004545963.1,5418995,5419195,+,MHC_II_beta,101541027,LOC101541027,pseudogene,aa_OG0000041,TRUE
MHCII,shrew,NW_004545963.1,5431312,5431560,+,IgC1_MHC_II_beta_HLA-DR,101541027,LOC101541027,pseudogene,aa_OG0000041,TRUE
MHCII,shrew,scaffold_141957,3787,3966,+,MHC_II_alpha,scaffold_141957_1:1,scaffold_141957_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_141957,20713,20958,+,MHC_II_beta,scaffold_141957_1:2,scaffold_141957_1:2,NA,NA,FALSE
MHCII,shrew,scaffold_143251,4262,4583,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_143251_1:1,scaffold_143251_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_144374,2796,3098,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000010618,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_145315,6157,6270,-,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_145315_1:1,scaffold_145315_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_145315,8073,8357,-,IgC1_MHC_II_beta_HLA-DR,scaffold_145315_1:1,scaffold_145315_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_146932,561,791,+,MHC_II_beta,ENSSARG00000002240,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_146932,5087,5389,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000002240,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_152159,5247,5551,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_152159_1:1,scaffold_152159_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_155602,3540,3805,-,IgC1_MHC_II_alpha_HLA-DQ,scaffold_155602_1:1,scaffold_155602_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_160092,15246,15317,-,MHC_II_alpha,scaffold_160092_1:1,scaffold_160092_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_162245,7606,7908,-,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_162245_1:1,scaffold_162245_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_164517,1166,1378,-,MHC_II_beta,scaffold_164517_1:1,scaffold_164517_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_169549,589,705,+,MHC_II_alpha,scaffold_169549_1:1,scaffold_169549_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_178690,4925,5086,+,MHC_II_alpha,scaffold_178690_1:1,scaffold_178690_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_186040,7915,8196,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSARG00000005708,NA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,scaffold_186040,8602,8859,-,MHC_II_alpha,ENSSARG00000005708,NA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,scaffold_187242,896,1176,+,IgC1_MHC_II_alpha_HLA-DQ,scaffold_187242_1:1,scaffold_187242_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_187647,18504,18614,-,MHC_II_alpha,scaffold_187647_1:1,scaffold_187647_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_191412,1471,1686,+,MHC_II_beta,scaffold_191412_1:1,scaffold_191412_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_199782,694,912,-,MHC_II_beta,scaffold_199782_1:1,scaffold_199782_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_206441,766,990,-,MHC_II_beta,scaffold_206441_1:1,scaffold_206441_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_210164,12917,13219,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000012868,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_232230,6760,7064,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000008454,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_232230,42764,43015,-,MHC_II_beta,ENSSARG00000008454,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_232713,5889,6068,+,MHC_II_alpha,ENSSARG00000003095,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_235768,10213,10493,+,IgC1_MHC_II_alpha_HLA-DQ,scaffold_235768_1:1,scaffold_235768_1:1,NA,NA,FALSE
MHCII,shrew,scaffold_235768,51155,51457,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSARG00000002556,NA,protein_coding,aa_OG0000041,TRUE
MHCII,shrew,scaffold_260270,51066,51317,+,MHC_II_alpha,ENSSARG00000010354,NA,protein_coding,aa_OG0000240,TRUE
MHCII,shrew,scaffold_260270,51701,51982,+,IgC1_MHC_II_alpha_HLA-DQ,ENSSARG00000010354,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,AAPE02058319,6354,6606,+,MHC_II_beta,102428463,LOC102428463,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,AAPE02058319,8646,8927,+,IgC1_MHC_II_beta_HLA-DR,102428463,LOC102428463,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,AAPE02058319,29015,29257,+,MHC_II_beta,ENSMLUG00000023291,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02058319,31168,31461,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000023291,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02060444,1708,1989,+,IgC1_MHC_II_beta_HLA-DR,AAPE02060444_1:1,AAPE02060444_1:1,NA,NA,FALSE
MHCII,microbat,AAPE02060444,22115,22345,+,MHC_II_beta,ENSMLUG00000007755,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02060444,24288,24599,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000007755,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02061277,954,1253,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000023490,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,AAPE02061277,1671,1922,-,MHC_II_alpha,ENSMLUG00000023490,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,AAPE02063199,5480,5731,+,MHC_II_beta,ENSMLUG00000025436,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02063199,7899,8192,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000025436,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,AAPE02066939,548,829,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000028978;102429593,NA;LOC102429593,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,AAPE02071575,1636,1929,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000005959;102442992,NA;LOC102442992,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL429863,3242655,3242924,+,IgC1_MHC_II_alpha_HLA-DR,GL429863_1:1,GL429863_1:1,NA,NA,FALSE
MHCII,microbat,GL430335,6935,7228,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000023128;111822996,NA;LOC111822996,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430335,71285,71536,+,MHC_II_alpha,ENSMLUG00000029681,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,71963,72268,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000029681,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,125650,125958,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000014440,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430335,133722,133955,-,MHC_II_beta,ENSMLUG00000014440,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430335,190409,190660,+,MHC_II_alpha,ENSMLUG00000029446,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,191088,191387,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000029446,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,224461,224754,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000027290;102424046,NA;LOC102424046,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430335,231286,231480,-,MHC_II_beta,ENSMLUG00000007750,NA,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL430335,319953,320204,+,MHC_II_alpha,ENSMLUG00000028884;106694679,NA;LOC106694679,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,microbat,GL430335,352495,352551,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000015568;102425620,NA;LOC102425620,NA,NA,FALSE
MHCII,microbat,GL430335,352554,352601,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000015568;102425620,NA;LOC102425620,NA,NA,FALSE
MHCII,microbat,GL430335,355473,355757,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000015568;102425620,NA;LOC102425620,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430335,446079,446330,+,MHC_II_alpha,ENSMLUG00000023643,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,446757,447056,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000023643,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430335,458262,458555,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000026291;111823581,NA;LOC111823581,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430335,537037,537285,+,MHC_II_alpha,ENSMLUG00000029312;102426241,NA;LOC102426241,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,microbat,GL430335,537934,538233,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000029312;102426241,NA;LOC102426241,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,microbat,GL430408,242925,243167,+,MHC_II_alpha,ENSMLUG00000029707,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430408,243607,243888,+,IgC1_MHC_II_alpha,ENSMLUG00000029707,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430408,272014,272294,-,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026786;102426046,NA;LOC102426046,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430408,324733,324966,-,MHC_II_beta,ENSMLUG00000026786;102426046,NA;LOC102426046,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430408,407916,408167,+,MHC_II_alpha,ENSMLUG00000025483,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430408,408434,408946,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000025483,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430464,14315,14561,+,MHC_II_beta,ENSMLUG00000029049,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,16470,16763,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000029049,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,81951,82175,+,MHC_II_beta,102424057,LOC102424057,mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430464,84126,84422,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000022532;102424057,NA;LOC102424057,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430464,107186,107506,+,MHC_II_beta,ENSMLUG00000023039,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,109296,109607,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000023039,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,124309,124563,+,MHC_II_beta,ENSMLUG00000023837,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,126734,127027,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000023837,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,171353,171598,+,MHC_II_beta,ENSMLUG00000030134,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,173532,173825,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000030134,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,213526,213819,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000027621,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,243855,244016,+,MHC_II_beta,ENSMLUG00000028086,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430464,247489,247770,+,IgC1_MHC_II_beta_HLA-DR,GL430464_1:1,GL430464_1:1,NA,NA,FALSE
MHCII,microbat,GL430611,442,723,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000024859;102434058,NA;LOC102434058,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430611,37100,37321,+,MHC_II_beta,ENSMLUG00000026540,NA,NA,NA,FALSE
MHCII,microbat,GL430611,39412,39690,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026540,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430611,88967,89194,+,MHC_II_beta,102434372,LOC102434372,mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430611,91120,91512,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000025945;102434372,NA;LOC102434372,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430611,154303,154533,+,MHC_II_beta,ENSMLUG00000026054,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430611,156683,156964,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026054,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430611,181644,181889,+,MHC_II_beta,ENSMLUG00000026460,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430611,184700,185077,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026460,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430724,38623,38850,+,MHC_II_beta,102417581,LOC102417581,mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430724,48482,48763,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000027310;102417581,NA;LOC102417581,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430724,90519,90740,+,MHC_II_beta,ENSMLUG00000029929,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430724,92695,92976,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000029929,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430724,129269,129562,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000029202;106695222,NA;LOC106695222,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430745,15741,16046,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000030168,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430745,16471,16722,-,MHC_II_alpha,ENSMLUG00000030168,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430745,100658,100903,+,MHC_II_beta,ENSMLUG00000025967;102417268,NA;LOC102417268,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430745,105737,106042,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLUG00000025967;102417268,NA;LOC102417268,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430787,83769,84013,+,MHC_II_beta,ENSMLUG00000026901,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430787,85942,86238,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026901,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430787,118959,119252,+,IgC1_MHC_II_beta_HLA-DR,GL430787_1:1,GL430787_1:1,NA,NA,FALSE
MHCII,microbat,GL430801,35543,35947,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000024916,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430801,36280,36531,-,MHC_II_alpha,ENSMLUG00000024916,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL430941,780,1007,-,MHC_II_beta,ENSMLUG00000029341;106695380,NA;LOC106695380,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL430941,22387,22680,-,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000005240;102417273,NA;LOC102417273,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,microbat,GL430941,24530,24831,-,MHC_II_beta,ENSMLUG00000005240;102417273,NA;LOC102417273,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,microbat,GL430941,65574,65855,-,IgC1_MHC_II_beta_HLA-DR,102417905,LOC102417905,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL430979,9360,9590,+,MHC_II_beta,ENSMLUG00000022263,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430979,11690,11971,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000022263,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL430979,27178,27441,+,MHC_II_beta,102423466,LOC102423466,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL430979,29712,29993,+,IgC1_MHC_II_beta_HLA-DR,102423466,LOC102423466,pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL431081,3281,3667,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000028071,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431081,4328,4579,-,MHC_II_alpha,ENSMLUG00000028071,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431129,18117,18344,+,MHC_II_beta,ENSMLUG00000026740,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431129,21288,21569,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000026740,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431129,45086,45268,+,MHC_II_beta,ENSMLUG00000013057,NA,NA,NA,FALSE
MHCII,microbat,GL431129,47123,47416,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000013057,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431137,23892,24107,+,MHC_II_beta,ENSMLUG00000028956;102418443,NA;LOC102418443,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL431137,26201,26578,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000028956;102418443,NA;LOC102418443,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,microbat,GL431137,57016,57306,-,IgC1_MHC_II_alpha,ENSMLUG00000024270,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431137,57746,57988,-,MHC_II_alpha,ENSMLUG00000024270,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431376,37803,38048,+,MHC_II_beta,ENSMLUG00000030543,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431376,41121,41414,+,IgC1_MHC_II_beta_HLA-DR,ENSMLUG00000030543,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431535,29669,29917,+,MHC_II_alpha,ENSMLUG00000029462,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431535,30838,30996,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000029462,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL431547,4740,4964,+,MHC_II_beta,ENSMLUG00000027094,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL431954,26129,26374,+,MHC_II_beta,ENSMLUG00000027858,NA,protein_coding,aa_OG0000041,TRUE
MHCII,microbat,GL432070,11823,12146,-,IgC1_MHC_II_alpha,ENSMLUG00000007762,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL432070,12404,12661,-,MHC_II_alpha,ENSMLUG00000007762,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL432468,5603,5818,+,MHC_II_beta,ENSMLUG00000016283;102423684,HLA-DPB1;LOC102423684,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL432468,6560,6853,+,IgC1_MHC_II_beta_HLA-DP,ENSMLUG00000016283;102423684,HLA-DPB1;LOC102423684,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,microbat,GL432873,6388,6639,+,MHC_II_alpha,ENSMLUG00000025462,NA,protein_coding,aa_OG0000240,TRUE
MHCII,microbat,GL432873,7066,7365,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMLUG00000025462,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,AANG04000760.1,13206,13643,-,IgC1_MHC_II_beta_HLA-DR,ENSFCAG00000041072,FECA-DRB,protein_coding,aa_OG0031243,TRUE
MHCII,cat,AANG04000760.1,16517,16699,-,MHC_II_beta,ENSFCAG00000041072,FECA-DRB,protein_coding,aa_OG0031243,TRUE
MHCII,cat,AANG04000760.1,16701,16766,-,MHC_II_beta,ENSFCAG00000041072,FECA-DRB,protein_coding,aa_OG0031243,TRUE
MHCII,cat,AANG04000760.1,26958,27149,-,MHC_II_beta,AANG04000760.1_1:1,AANG04000760.1_1:1,NA,NA,FALSE
MHCII,cat,AANG04000760.1,64113,64361,+,MHC_II_alpha,ENSFCAG00000045828,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,AANG04000760.1,64812,65108,+,IgC1_MHC_II_alpha,ENSFCAG00000045828,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33669209,33669457,+,MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33669907,33670203,+,IgC1_MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33702607,33702855,+,MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33703306,33703602,+,IgC1_MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33719333,33719770,-,IgC1_MHC_II_beta_HLA-DR,101098301,LOC101098301,mRNA,aa_OG0000041,TRUE
MHCII,cat,B2,33722248,33722469,-,MHC_II_beta,101098301,LOC101098301,mRNA,aa_OG0000041,TRUE
MHCII,cat,B2,33732635,33732826,-,MHC_II_beta,B2_1:1,B2_1:1,NA,NA,FALSE
MHCII,cat,B2,33769778,33770026,+,MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33770477,33770773,+,IgC1_MHC_II_alpha,ENSFCAG00000029158,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,33787520,33787957,-,IgC1_MHC_II_beta_HLA-DR,B2_2:1,B2_2:1,NA,NA,FALSE
MHCII,cat,B2,33790443,33790697,-,MHC_II_beta,B2_2:1,B2_2:1,NA,NA,FALSE
MHCII,cat,B2,33877584,33877808,+,MHC_II_beta,ENSFCAG00000046253,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,33881704,33882132,+,IgC1_MHC_II_beta_HLA-DR,ENSFCAG00000046253,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,33927793,33928083,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSFCAG00000041575,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,33928570,33928803,-,MHC_II_beta,ENSFCAG00000041575,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,34143151,34143440,-,IgC1_MHC_II_alpha,ENSFCAG00000012247,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,34143804,34144064,-,MHC_II_alpha,ENSFCAG00000012247,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,34158850,34159080,+,MHC_II_beta,ENSFCAG00000041523,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,34159758,34160078,+,IgC1_MHC_II_beta_HLA-DP,ENSFCAG00000041523,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,34403913,34404350,-,IgC1_MHC_II_beta_HLA-DR,ENSFCAG00000040474,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,34407011,34407232,-,MHC_II_beta,ENSFCAG00000040474,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,34493701,34493946,+,MHC_II_beta,ENSFCAG00000009202,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,34497858,34498286,+,IgC1_MHC_II_beta_HLA-DR,ENSFCAG00000009202,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,34543419,34543709,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSFCAG00000040474,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,34544203,34544436,-,MHC_II_beta,ENSFCAG00000040474,NA,protein_coding,aa_OG0012340,TRUE
MHCII,cat,B2,34760485,34760774,-,IgC1_MHC_II_alpha,ENSFCAG00000044012,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,34761138,34761398,-,MHC_II_alpha,ENSFCAG00000044012,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cat,B2,34776124,34776345,+,MHC_II_beta,ENSFCAG00000041258,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cat,B2,34777024,34777344,+,IgC1_MHC_II_beta_HLA-DP,ENSFCAG00000041258,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860302.1,25674,25964,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPRG00000010507,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,leopard,KV860302.1,26451,26684,-,MHC_II_beta,ENSPPRG00000010507,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,leopard,KV860302.1,255801,256091,-,IgC1_MHC_II_alpha,ENSPPRG00000002267,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,leopard,KV860302.1,256457,256684,-,MHC_II_alpha,ENSPPRG00000002267,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,leopard,KV860302.1,271312,271482,+,MHC_II_beta,ENSPPRG00000002022,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860302.1,272168,272488,+,IgC1_MHC_II_beta_HLA-DP,ENSPPRG00000002022,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860527.1,391,651,+,MHC_II_beta,ENSPPRG00000003123,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860527.1,3147,3611,+,IgC1_MHC_II_beta_HLA-DR,ENSPPRG00000003123,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860527.1,40450,40746,-,IgC1_MHC_II_alpha,ENSPPRG00000002976,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,leopard,KV860527.1,41196,41444,-,MHC_II_alpha,ENSPPRG00000002976,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,leopard,KV860613.1,88723,88947,+,MHC_II_beta,ENSPPRG00000015747,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860613.1,92758,93201,+,IgC1_MHC_II_beta_HLA-DR,ENSPPRG00000015747,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860644.1,2181,2426,-,MHC_II_beta,109261397,LOC109261397,mRNA,aa_OG0000041,TRUE
MHCII,leopard,KV860644.1,9027,9272,+,MHC_II_beta,ENSPPRG00000012001,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860644.1,11843,12286,+,IgC1_MHC_II_beta_HLA-DR,ENSPPRG00000012001,NA,protein_coding,aa_OG0000041,TRUE
MHCII,leopard,KV860644.1,37142,37279,-,MHC_II_alpha,109261396,LOC109261396,mRNA,aa_OG0000240,TRUE
MHCII,leopard,KV860644.1,72918,73109,+,MHC_II_beta,KV860644.1_1:1,KV860644.1_1:1,NA,NA,FALSE
MHCII,leopard,KV861111.1,661,813,+,MHC_II_alpha,KV861111.1_1:1,KV861111.1_1:1,NA,NA,FALSE
MHCII,leopard,LQGZ01249224.1,145,228,+,MHC_II_beta,LQGZ01249224.1_1:1,LQGZ01249224.1_1:1,NA,NA,FALSE
MHCII,leopard,LQGZ01249660.1,144,227,+,MHC_II_beta,LQGZ01249660.1_1:1,LQGZ01249660.1_1:1,NA,NA,FALSE
MHCII,leopard,LQGZ01249745.1,167,229,-,IgC1_MHC_II_alpha_HLA-DQ,LQGZ01249745.1_1:1,LQGZ01249745.1_1:1,NA,NA,FALSE
MHCII,leopard,LQGZ01250629.1,3,227,-,MHC_II_alpha,LQGZ01250629.1_1:1,LQGZ01250629.1_1:1,NA,NA,FALSE
MHCII,tiger,KE722032.1,551052,551372,-,IgC1_MHC_II_beta_HLA-DP,ENSPTIG00000005931;102954326,HLA-DPB1;LOC102954326,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,552058,552273,-,MHC_II_beta,ENSPTIG00000005931;102954326,HLA-DPB1;LOC102954326,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,567080,567307,+,MHC_II_alpha,ENSPTIG00000005948;102966493,HLA-DPA1;LOC102966493,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,tiger,KE722032.1,567673,567963,+,IgC1_MHC_II_alpha,ENSPTIG00000005948;102966493,HLA-DPA1;LOC102966493,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,tiger,KE722032.1,778950,779183,+,MHC_II_beta,ENSPTIG00000006225,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,tiger,KE722032.1,779670,779960,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTIG00000006225,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,tiger,KE722032.1,825759,826187,-,IgC1_MHC_II_beta_HLA-DR,ENSPTIG00000006266,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,829983,830204,-,MHC_II_beta,ENSPTIG00000006266,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,921803,922051,+,MHC_II_beta,ENSPTIG00000006308,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,924494,924937,+,IgC1_MHC_II_beta_HLA-DR,ENSPTIG00000006308,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,948535,948831,-,IgC1_MHC_II_alpha,ENSPTIG00000006439;107178930,HLA-DRA;LOC107178930,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,tiger,KE722032.1,949282,949530,-,MHC_II_alpha,107178930,LOC107178930,mRNA,aa_OG0000240,TRUE
MHCII,tiger,KE722032.1,982142,982333,+,MHC_II_beta,KE722032.1_1:1,KE722032.1_1:1,NA,NA,FALSE
MHCII,tiger,KE722032.1,994535,994795,+,MHC_II_beta,ENSPTIG00000006461;102966781,NA;LOC102966781,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,997834,998298,+,IgC1_MHC_II_beta_HLA-DR,ENSPTIG00000006461;102966781,NA;LOC102966781,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tiger,KE722032.1,1033718,1034014,-,IgC1_MHC_II_alpha,ENSPTIG00000006439,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,tiger,KE722032.1,1034464,1034712,-,MHC_II_alpha,ENSPTIG00000006439,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dog,12,2135238,2135486,+,MHC_II_alpha,ENSCAFG00000000803,DLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dog,12,2135905,2136231,+,IgC1_MHC_II_alpha_HLA-DR,ENSCAFG00000000803,DLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dog,12,2153579,2153887,-,IgC1_MHC_II_beta_HLA-DR,474860,HLA-DRB1,mRNA,aa_OG0000041,TRUE
MHCII,dog,12,2157112,2157363,-,MHC_II_beta,474860,HLA-DRB1,mRNA,aa_OG0000041,TRUE
MHCII,dog,12,2225104,2225355,+,MHC_II_alpha,ENSCAFG00000000812,DLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,dog,12,2225778,2226086,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCAFG00000000812,DLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,dog,12,2247144,2247449,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCAFG00000000814,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dog,12,2248898,2249131,-,MHC_II_beta,ENSCAFG00000000814,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dog,12,2307426,2307731,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCAFG00000000806;474862,NA;DLA-DQB1,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,dog,12,2360210,2360509,+,IgC1_MHC_II_beta_HLA-DR,474863,LOC474863,pseudogene,aa_OG0000041,TRUE
MHCII,dog,12,2591584,2591994,+,IgC1_MHC_II_beta_HLA-DP,12_1:1,12_1:1,NA,NA,FALSE
MHCII,dog,12,2604802,2604864,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCAFG00000000900,NA,NA,NA,FALSE
MHCII,dog,12,2605452,2605550,+,MHC_II_beta,ENSCAFG00000000900,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dog,12,2606490,2606600,+,IgC1_MHC_II_beta_HLA-DP,ENSCAFG00000000900,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dog,15,53360696,53360785,+,IgC1_MHC_II_alpha_I-A,15_1:1,15_1:1,NA,NA,FALSE
MHCII,red.fox,NBDQ01000007.1,33822163,33822411,+,MHC_II_alpha,ENSVVUG00000025063,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000007.1,33822830,33823156,+,IgC1_MHC_II_alpha,ENSVVUG00000025063,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000007.1,33842723,33843031,-,IgC1_MHC_II_beta_HLA-DR,ENSVVUG00000025064,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000007.1,33845718,33845939,-,MHC_II_beta,ENSVVUG00000025064,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000008.1,9517,9819,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVVUG00000025071,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000008.1,11277,11504,-,MHC_II_beta,ENSVVUG00000025071,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000008.1,48821,49138,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVVUG00000025078,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,red.fox,NBDQ01000008.1,49598,49777,-,MHC_II_beta,ENSVVUG00000025078,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,red.fox,NBDQ01000008.1,250267,250677,+,IgC1_MHC_II_beta_HLA-DP,112913871,LOC112913871,ncRNA,aa_OG0003802,TRUE
MHCII,red.fox,NBDQ01000008.1,263152,263235,-,IgC1_MHC_II_alpha_HLA-DR,ENSVVUG00000025137,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000008.1,263409,263654,-,IgC1_MHC_II_alpha,ENSVVUG00000025137,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000008.1,264123,264248,-,MHC_II_alpha,ENSVVUG00000025137,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000008.1,277884,277997,+,MHC_II_beta,ENSVVUG00000025174,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000008.1,278677,278960,+,IgC1_MHC_II_beta_HLA-DP,ENSVVUG00000025174,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000126.1,467884,467970,-,IgC1_MHC_II_alpha_I-A,NBDQ01000126.1_1:1,NBDQ01000126.1_1:1,NA,NA,FALSE
MHCII,red.fox,NBDQ01000448.1,22343,22564,+,MHC_II_beta,ENSVVUG00000001362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000448.1,24024,24326,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVVUG00000001362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,red.fox,NBDQ01000448.1,43104,43412,-,IgC1_MHC_II_alpha_HLA-DQ,ENSVVUG00000001398,NA,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01000448.1,43832,44080,-,MHC_II_alpha,ENSVVUG00000001398,NA,protein_coding,aa_OG0000240,TRUE
MHCII,red.fox,NBDQ01018616.1,306,392,-,IgC1_MHC_II_alpha_I-A,NBDQ01018616.1_1:1,NBDQ01018616.1_1:1,NA,NA,FALSE
MHCII,panda,GL192386.1,3262845,3263015,-,MHC_II_beta,ENSAMEG00000001900;100463634,HLA-DPB1;LOC100463634,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL192386.1,3276181,3276408,+,MHC_II_alpha,ENSAMEG00000001901,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL192386.1,3276746,3277072,+,IgC1_MHC_II_alpha,ENSAMEG00000001901,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL192386.1,3291109,3291307,-,IgC1_MHC_II_beta_HLA-DP,GL192386.1_1:1,GL192386.1_1:1,NA,NA,FALSE
MHCII,panda,GL192386.1,3494446,3494679,+,MHC_II_beta,ENSAMEG00000002044;100478290,NA;LOC100478290,protein_coding;mRNA,aa_OG0005431;aa_OG0012340,TRUE
MHCII,panda,GL192386.1,3495142,3495459,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSAMEG00000002044;100478290,NA;LOC100478290,protein_coding;mRNA,aa_OG0005431;aa_OG0012340,TRUE
MHCII,panda,GL192386.1,3523777,3524058,+,MHC_II_beta,GL192386.1_2:1,GL192386.1_2:1,NA,NA,FALSE
MHCII,panda,GL192386.1,3524894,3525256,+,IgC1_MHC_II_beta_HLA-DQ_I-A,GL192386.1_2:2,GL192386.1_2:2,NA,NA,FALSE
MHCII,panda,GL192386.1,3538465,3538896,-,IgC1_MHC_II_beta_HLA-DR,ENSAMEG00000002099;100478546,NA;LOC100478546,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL192386.1,3541771,3541989,-,MHC_II_beta,ENSAMEG00000002099;100478546,NA;LOC100478546,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,25545,25775,+,MHC_II_beta,ENSAMEG00000002342;100484974,NA;LOC100484974,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,27274,27579,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSAMEG00000002342;100484974,NA;LOC100484974,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,31138,31278,+,IgC1_MHC_II_beta_HLA-DQ_I-A,GL193799.1_1:1,GL193799.1_1:1,NA,NA,FALSE
MHCII,panda,GL193799.1,45415,45726,-,IgC1_MHC_II_alpha_HLA-DQ,ENSAMEG00000002348;100464025,NA;LOC100464025,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,panda,GL193799.1,46142,46390,-,MHC_II_alpha,ENSAMEG00000002348;100464025,NA;LOC100464025,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,panda,GL193799.1,105351,105581,+,MHC_II_beta,105241603,LOC105241603,mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,124257,124568,-,IgC1_MHC_II_alpha_HLA-DQ,ENSAMEG00000002352,NA,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL193799.1,124984,125232,-,MHC_II_alpha,ENSAMEG00000002352,NA,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL193799.1,189093,189311,+,MHC_II_beta,ENSAMEG00000002361;100464780,NA;LOC100464780,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,191905,192336,+,IgC1_MHC_II_beta_HLA-DR,ENSAMEG00000002361;100464780,NA;LOC100464780,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,panda,GL193799.1,236731,237045,-,IgC1_MHC_II_alpha,ENSAMEG00000002390,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL193799.1,237473,237721,-,MHC_II_alpha,ENSAMEG00000002390,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,panda,GL197403.1,1868,2188,+,IgC1_MHC_II_beta_HLA-DR,105235297,LOC105235297,pseudogene,aa_OG0000041,TRUE
MHCII,panda,GL203485.1,679,780,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL203485.1_1:1,GL203485.1_1:1,NA,NA,FALSE
MHCII,panda,GL224679.1,1,219,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL224679.1_1:1,GL224679.1_1:1,NA,NA,FALSE
MHCII,panda,GL240984.1,1,162,+,MHC_II_beta,GL240984.1_1:1,GL240984.1_1:1,NA,NA,FALSE
MHCII,ferret,AEYP01108921.1,11043,11282,+,MHC_II_beta,ENSMPUG00000007244,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ferret,AEYP01108921.1,13111,13416,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMPUG00000007244,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ferret,AEYP01113054.1,4,249,-,MHC_II_alpha,AEYP01113054.1_1:1,AEYP01113054.1_1:1,NA,NA,FALSE
MHCII,ferret,AEYP01116266.1,472,791,-,IgC1_MHC_II_beta_HLA-DR,AEYP01116266.1_1:1,AEYP01116266.1_1:1,NA,NA,FALSE
MHCII,ferret,GL896929.1,3939147,3939683,+,IgC1_MHC_II_alpha_HLA-DQ,101684895,LOC101684895,pseudogene,aa_OG0000240,TRUE
MHCII,ferret,GL896965.1,2116438,2116659,-,IgC1_MHC_II_alpha_I-A,GL896965.1_1:1,GL896965.1_1:1,NA,NA,FALSE
MHCII,ferret,GL897054.1,625,942,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMPUG00000001924,NA,protein_coding,aa_OG0012340,TRUE
MHCII,ferret,GL897054.1,1396,1473,-,MHC_II_beta,ENSMPUG00000001924,NA,protein_coding,aa_OG0012340,TRUE
MHCII,ferret,GL897054.1,216142,216433,+,IgC1_MHC_II_beta_HLA-DP,GL897054.1_1:1,GL897054.1_1:1,NA,NA,FALSE
MHCII,ferret,GL897054.1,228814,229098,-,IgC1_MHC_II_alpha,ENSMPUG00000001961,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897054.1,229678,229938,-,MHC_II_alpha,ENSMPUG00000001961,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897363.1,118220,118468,+,MHC_II_alpha,ENSMPUG00000009626;101671551,NA;LOC101671551,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,ferret,GL897363.1,188099,188347,+,MHC_II_alpha,ENSMPUG00000009651;106003441,NA;LOC106003441,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,ferret,GL897363.1,188780,189094,+,IgC1_MHC_II_alpha,ENSMPUG00000009651;106003441,NA;LOC106003441,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,ferret,GL897363.1,235222,235605,-,IgC1_MHC_II_beta_HLA-DR,ENSMPUG00000009646;101670362,NA;LOC101670362,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,ferret,GL897363.1,237959,238267,-,MHC_II_beta,ENSMPUG00000009646;101670362,NA;LOC101670362,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,ferret,GL897478.1,2316,2447,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL897478.1_1:1,GL897478.1_1:1,NA,NA,FALSE
MHCII,ferret,GL897478.1,110587,110832,+,MHC_II_alpha,ENSMPUG00000014987,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897478.1,111214,111534,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMPUG00000014987,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897489.1,15046,15327,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMPUG00000005937,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897489.1,15786,16034,-,MHC_II_alpha,ENSMPUG00000005937,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897580.1,15790,16047,+,MHC_II_alpha,ENSMPUG00000010692,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897580.1,16431,16778,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMPUG00000010692,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ferret,GL897580.1,42550,42855,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMPUG00000010697,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ferret,GL897580.1,44383,44616,-,MHC_II_beta,ENSMPUG00000010697,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ferret,GL897626.1,21105,21437,+,IgC1_MHC_II_beta_HLA-DR,ENSMPUG00000007293;101691795,NA;LOC101691795,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,ferret,GL897870.1,11120,11233,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101673877,LOC101673877,mRNA,aa_OG0000041,TRUE
MHCII,ferret,GL897911.1,4213,4509,-,IgC1_MHC_II_alpha,101677315,LOC101677315,pseudogene,aa_OG0000240,TRUE
MHCII,ferret,GL897911.1,4960,5208,-,MHC_II_alpha,101677315,LOC101677315,pseudogene,aa_OG0000240,TRUE
MHCII,ferret,GL897912.1,7207,7353,-,IgC1_MHC_II_beta_HLA-DQ_I-A,GL897912.1_1:1,GL897912.1_1:1,NA,NA,FALSE
MHCII,horse,5,69611614,69611805,+,IgC1_MHC_II_alpha_HLA-DQ,5_1:1,5_1:1,NA,NA,FALSE
MHCII,horse,20,33600547,33600837,+,MHC_II_alpha,ENSECAG00000012660,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33601229,33601519,+,IgC1_MHC_II_alpha,ENSECAG00000012660,DRA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33622683,33623156,-,IgC1_MHC_II_beta_HLA-DR,ENSECAG00000022072,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,33625810,33626025,-,MHC_II_beta,ENSECAG00000022072,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,33699338,33699589,+,MHC_II_alpha,ENSECAG00000024259,NA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33699980,33700279,+,IgC1_MHC_II_alpha_HLA-DQ,ENSECAG00000024259,NA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33714318,33714761,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000036289;100060257,NA;LOC100060257,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,horse,20,33718151,33718451,-,MHC_II_beta,ENSECAG00000036289;100060257,NA;LOC100060257,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,horse,20,33798044,33798289,+,MHC_II_alpha,100060287,LOC100060287,pseudogene,aa_OG0000240,TRUE
MHCII,horse,20,33798753,33799034,+,IgC1_MHC_II_alpha_HLA-DQ,100060287,LOC100060287,pseudogene,aa_OG0000240,TRUE
MHCII,horse,20,33811022,33811126,-,IgC1_MHC_II_beta_HLA-DQ_I-A,20_1:1,20_1:1,NA,NA,FALSE
MHCII,horse,20,33814697,33814999,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,33818502,33818768,-,MHC_II_beta,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,33926350,33926601,+,MHC_II_alpha,ENSECAG00000009142,DQA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33926988,33927344,+,IgC1_MHC_II_alpha_HLA-DQ,ENSECAG00000009142,DQA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,33940828,33940977,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000017143,DQB,NA,NA,FALSE
MHCII,horse,20,33943996,33944307,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,33954256,33954504,-,MHC_II_beta,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34014625,34014882,+,MHC_II_alpha,ENSECAG00000009142,DQA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,34015193,34015612,+,IgC1_MHC_II_alpha_HLA-DQ,ENSECAG00000009142,DQA,protein_coding,aa_OG0000240,TRUE
MHCII,horse,20,34029288,34029413,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000017143,DQB,NA,NA,FALSE
MHCII,horse,20,34032582,34032884,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34035256,34035486,-,MHC_II_beta,ENSECAG00000017143,DQB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34086501,34086818,-,IgC1_MHC_II_beta_HLA-DR,100060562,LOC100060562,pseudogene,aa_OG0012340,TRUE
MHCII,horse,20,34087266,34087495,-,MHC_II_beta,100060562,LOC100060562,pseudogene,aa_OG0012340,TRUE
MHCII,horse,20,34103482,34103700,+,MHC_II_beta,ENSECAG00000020358,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34106294,34106626,+,IgC1_MHC_II_beta_HLA-DR,ENSECAG00000020358,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34156185,34156262,+,MHC_II_beta,100146181,LOC100146181,pseudogene,aa_OG0000041,TRUE
MHCII,horse,20,34156265,34156429,+,MHC_II_beta,100146181,LOC100146181,pseudogene,aa_OG0000041,TRUE
MHCII,horse,20,34158690,34159106,+,IgC1_MHC_II_beta_HLA-DR,ENSECAG00000020358;100146181,DRB;LOC100146181,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,horse,20,34212769,34213086,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100060663,LOC100060663,pseudogene,aa_OG0012340,TRUE
MHCII,horse,20,34213553,34213790,-,MHC_II_beta,100060663,LOC100060663,pseudogene,aa_OG0012340,TRUE
MHCII,horse,20,34248492,34248836,+,MHC_II_beta,100060697,LOC100060697,mRNA,aa_OG0000041,TRUE
MHCII,horse,20,34251701,34252021,+,IgC1_MHC_II_beta_HLA-DR,ENSECAG00000020358;111767457,DRB;LOC111767457,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,horse,20,34274364,34274612,+,MHC_II_beta,ENSECAG00000012933,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34276864,34277196,+,IgC1_MHC_II_beta_HLA-DR,ENSECAG00000012933,DRB,protein_coding,aa_OG0000041,TRUE
MHCII,horse,20,34291908,34292198,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSECAG00000020976,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,horse,20,34292691,34292924,-,MHC_II_beta,ENSECAG00000020976,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,dolphin,GeneScaffold_3463,6128,6427,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTTRG00000004249,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,dolphin,GeneScaffold_3463,6906,7136,-,MHC_II_beta,ENSTTRG00000004249,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,dolphin,GeneScaffold_3463,185910,185981,+,MHC_II_beta,GeneScaffold_3463_1:1,GeneScaffold_3463_1:1,NA,NA,FALSE
MHCII,dolphin,GeneScaffold_3464,7805,8108,-,IgC1_MHC_II_beta_HLA-DR,GeneScaffold_3464_1:1,GeneScaffold_3464_1:1,NA,NA,FALSE
MHCII,dolphin,GeneScaffold_3464,11176,11427,-,MHC_II_beta,GeneScaffold_3464_1:1,GeneScaffold_3464_1:1,NA,NA,FALSE
MHCII,dolphin,GeneScaffold_3465,9082,9387,+,IgC1_MHC_II_alpha,ENSTTRG00000004130,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,dolphin,GeneScaffold_3465,21326,21646,-,IgC1_MHC_II_beta_HLA-DR,ENSTTRG00000004146,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dolphin,GeneScaffold_3465,23946,24191,-,MHC_II_beta,ENSTTRG00000004146,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dolphin,GeneScaffold_3465,45149,45469,-,IgC1_MHC_II_beta_HLA-DR,GeneScaffold_3465_1:1,GeneScaffold_3465_1:1,NA,NA,FALSE
MHCII,dolphin,GeneScaffold_3465,46270,46497,-,MHC_II_beta,GeneScaffold_3465_1:1,GeneScaffold_3465_1:1,NA,NA,FALSE
MHCII,dolphin,GeneScaffold_3465,91293,91544,+,MHC_II_alpha,ENSTTRG00000004152,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dolphin,GeneScaffold_3465,91969,92268,+,IgC1_MHC_II_alpha_HLA-DQ,ENSTTRG00000004152,NA,protein_coding,aa_OG0000240,TRUE
MHCII,dolphin,NC_047043.1,23989108,23989371,+,MHC_II_alpha,101336089,LOC101336089,mRNA,aa_OG0000240,TRUE
MHCII,dolphin,NC_047043.1,23989804,23990094,+,IgC1_MHC_II_alpha,101336089,LOC101336089,mRNA,aa_OG0000240,TRUE
MHCII,dolphin,NC_047043.1,24002832,24003152,-,IgC1_MHC_II_beta_HLA-DR,101336370,LOC101336370,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,24005425,24005670,-,MHC_II_beta,101336370,LOC101336370,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,24021761,24022081,-,IgC1_MHC_II_beta_HLA-DR,117307523,LOC117307523,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,24023740,24023976,-,MHC_II_beta,117307523,LOC117307523,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,24067541,24067792,+,MHC_II_alpha,101328860,LOC101328860,mRNA,aa_OG0000240,TRUE
MHCII,dolphin,NC_047043.1,24068217,24068516,+,IgC1_MHC_II_alpha_HLA-DQ,101328860,LOC101328860,mRNA,aa_OG0000240,TRUE
MHCII,dolphin,NC_047043.1,24081562,24081858,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101329439,TUTR-DQB,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,24085010,24085225,-,MHC_II_beta,101329439,TUTR-DQB,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,40069459,40069746,-,IgC1_MHC_II_beta_HLA-DP,101333145,LOC101333145,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,40071359,40071430,-,MHC_II_beta,101333145,LOC101333145,mRNA,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,40250511,40250741,+,MHC_II_beta,101336672,LOC101336672,mRNA,aa_OG0012340,TRUE
MHCII,dolphin,NC_047043.1,40251222,40251521,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101336672,LOC101336672,mRNA,aa_OG0012340,TRUE
MHCII,dolphin,NC_047043.1,40265350,40265653,-,IgC1_MHC_II_beta_HLA-DR,101336386,LOC101336386,pseudogene,aa_OG0000041,TRUE
MHCII,dolphin,NC_047043.1,40268721,40268972,-,MHC_II_beta,101336386,LOC101336386,pseudogene,aa_OG0000041,TRUE
MHCII,dolphin,scaffold_88724,5987,6283,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTTRG00000005634,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dolphin,scaffold_88724,9435,9668,-,MHC_II_beta,ENSTTRG00000005634,NA,protein_coding,aa_OG0000041,TRUE
MHCII,dolphin,scaffold_93655,4050,4195,+,IgC1_MHC_II_beta_HLA-DP,scaffold_93655_1:1,scaffold_93655_1:1,NA,NA,FALSE
MHCII,cow,23,7041233,7041493,+,MHC_II_beta,ENSBTAG00000050757,DSB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,7050058,7050396,+,IgC1_MHC_II_beta_HLA-DR,ENSBTAG00000050757,DSB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,7074128,7074376,+,MHC_II_alpha,ENSBTAG00000002581,BOLA-DYA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,7075846,7076127,+,IgC1_MHC_II_alpha_HLA-DQ,ENSBTAG00000002581,BOLA-DYA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,7098805,7099089,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSBTAG00000045923,BOLA-DYB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,7101354,7101659,-,MHC_II_beta,ENSBTAG00000045923,BOLA-DYB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,7115862,7116161,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSBTAG00000047707,BOLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,cow,23,7116622,7116852,-,MHC_II_beta,ENSBTAG00000047707,BOLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,cow,23,7332023,7332262,+,IgC1_MHC_II_beta_HLA-DP,23_1:1,23_1:1,NA,NA,FALSE
MHCII,cow,23,25583944,25584240,-,IgC1_MHC_II_alpha_HLA-DQ,ENSBTAG00000009656,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25584664,25584915,-,MHC_II_alpha,ENSBTAG00000009656,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25609416,25609631,+,MHC_II_beta,ENSBTAG00000021077,BOLA-DQB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25617003,25617311,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSBTAG00000021077,BOLA-DQB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25637741,25638040,-,IgC1_MHC_II_alpha_HLA-DQ,ENSBTAG00000038128,BOLA-DQA5,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25640074,25640334,-,MHC_II_alpha,ENSBTAG00000038128,BOLA-DQA5,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25674103,25674330,+,MHC_II_beta,ENSBTAG00000019588,BLA-DQB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25678272,25678580,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSBTAG00000019588,BLA-DQB,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25692124,25692423,-,IgC1_MHC_II_alpha_HLA-DQ,ENSBTAG00000037605,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25692853,25693107,-,MHC_II_alpha,ENSBTAG00000037605,NA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25730121,25730339,+,MHC_II_beta,ENSBTAG00000013919,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25732535,25732819,+,IgC1_MHC_II_beta_HLA-DR,ENSBTAG00000013919,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25756831,25757150,+,IgC1_MHC_II_beta_HLA-DR,23_2:1,23_2:1,NA,NA,FALSE
MHCII,cow,23,25773407,25773670,+,MHC_II_beta,ENSBTAG00000048364;529009,NA;LA-DRB,protein_coding;pseudogene,aa_OG0025095;aa_OG0000041,TRUE
MHCII,cow,23,25779275,25779610,+,IgC1_MHC_II_beta_HLA-DR,ENSBTAG00000048364;529009,NA;LA-DRB,protein_coding;pseudogene,aa_OG0025095;aa_OG0000041,TRUE
MHCII,cow,23,25803824,25804066,+,MHC_II_beta,ENSBTAG00000038397,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25806140,25806424,+,IgC1_MHC_II_beta_HLA-DR,ENSBTAG00000038397,NA,protein_coding,aa_OG0000041,TRUE
MHCII,cow,23,25828423,25828731,+,IgC1_MHC_II_beta_HLA-DR,ENSBTAG00000015565,NA,protein_coding,aa_OG0037122,TRUE
MHCII,cow,23,25839954,25840256,-,IgC1_MHC_II_alpha,ENSBTAG00000010645,BOLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,cow,23,25840662,25840922,-,MHC_II_alpha,ENSBTAG00000010645,BOLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,13,31784725,31784889,+,IgC1_MHC_II_alpha,13_1:1,13_1:1,NA,NA,FALSE
MHCII,goat,23,23347761,23348021,+,MHC_II_alpha,ENSCHIG00000013201,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23348427,23348738,+,IgC1_MHC_II_alpha,ENSCHIG00000013201,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23359865,23360185,-,IgC1_MHC_II_beta_HLA-DR,108633435,LOC108633435,pseudogene,rna_OG0178111,TRUE
MHCII,goat,23,23382955,23383281,-,IgC1_MHC_II_beta_HLA-DR,ENSCHIG00000018350;102190745,NA;LOC102190745,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,goat,23,23385878,23386120,-,MHC_II_beta,ENSCHIG00000018350;102190745,NA;LOC102190745,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,goat,23,23409919,23410257,-,IgC1_MHC_II_beta_HLA-DR,ENSCHIG00000014502;102190472,NA;LOC102190472,protein_coding;pseudogene,aa_OG0025095;aa_OG0000041,TRUE
MHCII,goat,23,23412318,23412548,-,MHC_II_beta,ENSCHIG00000014502;102190472,NA;LOC102190472,protein_coding;pseudogene,aa_OG0025095;aa_OG0000041,TRUE
MHCII,goat,23,23427984,23428294,-,IgC1_MHC_II_beta_HLA-DR,ENSCHIG00000008942;102181488,NA;LOC102181488,protein_coding;pseudogene,aa_OG0000041;aa_OG0009423,TRUE
MHCII,goat,23,23434444,23434581,-,MHC_II_beta,ENSCHIG00000008942;102181488,NA;LOC102181488,protein_coding;pseudogene,aa_OG0000041;aa_OG0009423,TRUE
MHCII,goat,23,23458242,23458535,-,IgC1_MHC_II_beta_HLA-DR,ENSCHIG00000015976,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,23460696,23460917,-,MHC_II_beta,ENSCHIG00000015976,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,23514633,23514887,+,MHC_II_alpha,ENSCHIG00000013343,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23515321,23515620,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCHIG00000013343,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23527540,23527974,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCHIG00000025604,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,23531625,23531840,-,MHC_II_beta,ENSCHIG00000025604,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,23562649,23562897,+,MHC_II_alpha,ENSCHIG00000010572,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23563325,23563624,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCHIG00000010572,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,23580815,23581168,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCHIG00000016214,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,23586051,23586278,-,MHC_II_beta,ENSCHIG00000016214,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,41350553,41350770,-,IgC1_MHC_II_beta_HLA-DP,23_1:1,23_1:1,NA,NA,FALSE
MHCII,goat,23,41545805,41546035,+,MHC_II_beta,ENSCHIG00000010527,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,goat,23,41546510,41546800,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCHIG00000010527,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,goat,23,41562775,41563092,+,MHC_II_beta,ENSCHIG00000013102,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,41565076,41565360,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCHIG00000013102,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,41584915,41585250,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCHIG00000022158,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,41586704,41586952,-,MHC_II_alpha,ENSCHIG00000022158,NA,protein_coding,aa_OG0000240,TRUE
MHCII,goat,23,41610414,41610734,-,IgC1_MHC_II_beta_HLA-DR,ENSCHIG00000009662,NA,protein_coding,aa_OG0000041,TRUE
MHCII,goat,23,41618145,41618441,-,MHC_II_beta,ENSCHIG00000009662,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24827843,24828115,+,MHC_II_alpha,ENSSSCG00000001453,SLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pig,7,24828553,24828843,+,IgC1_MHC_II_alpha,ENSSSCG00000001453,SLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pig,7,24848229,24848528,-,IgC1_MHC_II_beta_HLA-DR,100135041,SLA-DRB4,pseudogene,aa_OG0000041,TRUE
MHCII,pig,7,24850977,24851186,-,MHC_II_beta,100135041,SLA-DRB4,pseudogene,aa_OG0000041,TRUE
MHCII,pig,7,24868891,24869262,-,IgC1_MHC_II_beta_HLA-DR,ENSSSCG00000031336;100153969,NA;LOC100153969,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,pig,7,24871278,24871554,-,MHC_II_beta,ENSSSCG00000031336,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24884481,24884852,-,IgC1_MHC_II_beta_HLA-DR,ENSSSCG00000001455,SLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24887061,24887302,-,MHC_II_beta,ENSSSCG00000001455,SLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24903640,24904011,-,IgC1_MHC_II_beta_HLA-DR,ENSSSCG00000001455,SLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24906353,24906568,-,MHC_II_beta,ENSSSCG00000001455,SLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24957266,24957532,+,MHC_II_alpha,ENSSSCG00000001456,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pig,7,24957930,24958274,+,IgC1_MHC_II_alpha_HLA-DQ,ENSSSCG00000001456,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pig,7,24968470,24968604,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSSCG00000001457;100135045,SLA-DQB1;SLA-DQB2,protein_coding;pseudogene,aa_OG0000041;aa_OG0000240,TRUE
MHCII,pig,7,24971195,24971518,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSSCG00000001457,SLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24975488,24975703,-,MHC_II_beta,ENSSSCG00000001457,SLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig,7,24988062,24988361,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100155975,LOC100155975,ncRNA,aa_OG0012340,TRUE
MHCII,pig,7,24998811,24999047,+,MHC_II_beta,ENSSSCG00000001458;100513097,NA;LOC100513097,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig,7,25000259,25000555,+,IgC1_MHC_II_beta_HLA-DR,ENSSSCG00000001458;106504372,NA;LOC106504372,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig,7,25012143,25012250,+,MHC_II_alpha,7_1:1,7_1:1,NA,NA,FALSE
MHCII,pig,7,25027194,25027469,-,IgC1_MHC_II_beta_HLA-DQ_I-A,100135048,SLA-DYB,pseudogene,rna_OG0026919,TRUE
MHCII,pig,7,25032778,25033077,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSSCG00000001459,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,pig,7,25033538,25033771,-,MHC_II_beta,ENSSSCG00000001459,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,bushbaby,GL873527.1,4656376,4656582,+,MHC_II_beta,ENSOGAG00000026189,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3356217,3356501,-,IgC1_MHC_II_beta_HLA-DR,100956803,LOC100956803,mRNA,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3358812,3359060,-,MHC_II_beta,ENSOGAG00000013069;100956803,NA;LOC100956803,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3541542,3541793,+,MHC_II_alpha,ENSOGAG00000008398,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3542244,3542534,+,IgC1_MHC_II_alpha_HLA-DR,ENSOGAG00000008398,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3557455,3557736,-,IgC1_MHC_II_beta_HLA-DR,100957117,LOC100957117,mRNA,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3559357,3559602,-,MHC_II_beta,ENSOGAG00000009732;100957117,NA;LOC100957117,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3628317,3628562,+,MHC_II_alpha,ENSOGAG00000008401,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3629005,3629286,+,IgC1_MHC_II_alpha_HLA-DQ,ENSOGAG00000008401,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3657151,3657435,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOGAG00000005662,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3659110,3659319,-,MHC_II_beta,ENSOGAG00000005662,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3687343,3687513,-,MHC_II_beta,GL873550.1_1:1,GL873550.1_1:1,NA,NA,FALSE
MHCII,bushbaby,GL873550.1,3713161,3713478,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOGAG00000031343;105886937,NA;LOC105886937,protein_coding;mRNA,aa_OG0005431;aa_OG0012340,TRUE
MHCII,bushbaby,GL873550.1,3713932,3714165,-,MHC_II_beta,ENSOGAG00000031343;105886937,NA;LOC105886937,protein_coding;mRNA,aa_OG0005431;aa_OG0012340,TRUE
MHCII,bushbaby,GL873550.1,3947290,3947583,-,IgC1_MHC_II_alpha,ENSOGAG00000006476,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3947910,3948179,-,MHC_II_alpha,ENSOGAG00000006476,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bushbaby,GL873550.1,3961987,3962223,+,MHC_II_beta,ENSOGAG00000016138;100961105,NA;LOC100961105,protein_coding;mRNA,aa_OG0020696;aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3968052,3968336,+,IgC1_MHC_II_beta_HLA-DP,100961105,LOC100961105,mRNA,aa_OG0000041,TRUE
MHCII,bushbaby,GL873550.1,3976781,3977059,+,IgC1_MHC_II_beta_HLA-DP,GL873550.1_2:1,GL873550.1_2:1,NA,NA,FALSE
MHCII,mouse.lemur,6,3073296,3073649,-,IgC1_MHC_II_alpha,ENSMICG00000003711,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,3073879,3074145,-,MHC_II_alpha,ENSMICG00000003711,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,3088827,3088943,+,MHC_II_beta,6_1:1,6_1:1,NA,NA,FALSE
MHCII,mouse.lemur,6,3094033,3094263,+,MHC_II_beta,ENSMICG00000030867,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,3097235,3097534,+,IgC1_MHC_II_beta_HLA-DP,ENSMICG00000030867,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4034603,4034866,+,MHC_II_beta,ENSMICG00000034483;105886027,HLA-DOB;LOC105886027,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,mouse.lemur,6,4035143,4035418,+,MHC_II_beta,105886027,LOC105886027,mRNA,aa_OG0012340,TRUE
MHCII,mouse.lemur,6,4035794,4036120,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMICG00000034483;105886027,HLA-DOB;LOC105886027,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,mouse.lemur,6,4044376,4044636,+,IgC1_MHC_II_beta_HLA-DQ_I-A,6_2:1,6_2:1,NA,NA,FALSE
MHCII,mouse.lemur,6,4149984,4150231,+,MHC_II_beta,ENSMICG00000031829,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4152060,4152347,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMICG00000031829,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4185051,4185245,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMICG00000044751,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4186508,4186630,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMICG00000044751;105869753,NA;LOC105869753,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4187155,4187250,+,MHC_II_alpha,ENSMICG00000044751;105869753,NA;LOC105869753,NA,NA,FALSE
MHCII,mouse.lemur,6,4201249,4201536,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMICG00000003714,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4238853,4239152,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMICG00000044751;105869753,NA;LOC105869753,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4239557,4239805,-,MHC_II_alpha,ENSMICG00000044751;105869753,NA;LOC105869753,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4242456,4242737,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMICG00000044751;105869752,NA;LOC105869752,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4243166,4243414,-,MHC_II_alpha,ENSMICG00000044751;105869752,NA;LOC105869752,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4390114,4390356,+,MHC_II_beta,ENSMICG00000036984;109730834,NA;LOC109730834,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4392198,4392443,+,IgC1_MHC_II_beta_HLA-DR,109730834,LOC109730834,misc_RNA,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4397180,4397380,+,MHC_II_beta,ENSMICG00000036984,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4398870,4399154,+,IgC1_MHC_II_beta_HLA-DR,ENSMICG00000036984;105876782,NA;LOC105876782,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,mouse.lemur,6,4431758,4432048,-,IgC1_MHC_II_alpha_HLA-DR,ENSMICG00000006228,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4432522,4432764,-,MHC_II_alpha,ENSMICG00000006228,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,mouse.lemur,6,4554814,4555101,-,IgC1_MHC_II_beta_HLA-DR,105872012,LOC105872012,mRNA,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ013315.1,18033,18314,-,IgC1_MHC_II_alpha_HLA-DQ,ENSPCOG00000014881,NA,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ013315.1,18756,19007,-,MHC_II_alpha,ENSPCOG00000014881,NA,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ017408.1,14197,14289,+,IgC1_MHC_II_alpha_HLA-DQ,KQ017408.1_1:1,KQ017408.1_1:1,NA,NA,FALSE
MHCII,coquerels.sifaka,KQ024025.1,42696,42983,+,IgC1_MHC_II_beta_HLA-DR,KQ024025.1_1:1,KQ024025.1_1:1,NA,NA,FALSE
MHCII,coquerels.sifaka,KQ024025.1,45472,45702,+,MHC_II_beta,ENSPCOG00000022579,NA,protein_coding,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ024025.1,77900,78169,-,IgC1_MHC_II_alpha_HLA-DR,ENSPCOG00000025637,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ024025.1,78636,78884,-,MHC_II_alpha,ENSPCOG00000025637,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ025813.1,864294,864524,-,MHC_II_beta,105821659,LOC105821659,mRNA,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ025813.1,895581,895736,+,MHC_II_alpha,105821660,LOC105821660,mRNA,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ025813.1,896087,896392,+,IgC1_MHC_II_alpha,105821660,LOC105821660,mRNA,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ027444.1,7169,7486,+,IgC1_MHC_II_alpha,KQ027444.1_1:1,KQ027444.1_1:1,NA,NA,FALSE
MHCII,coquerels.sifaka,KQ027444.1,30546,30776,-,MHC_II_beta,105824372,LOC105824372,mRNA,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ027444.1,73547,73816,-,MHC_II_beta,105824372,LOC105824372,mRNA,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ027444.1,89128,89376,-,MHC_II_beta,105824384,LOC105824384,mRNA,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ027444.1,97559,97825,+,MHC_II_alpha,ENSPCOG00000015236,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ027444.1,98163,98444,+,IgC1_MHC_II_alpha,ENSPCOG00000015236,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,coquerels.sifaka,KQ027444.1,363426,363659,+,MHC_II_beta,ENSPCOG00000022286,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,coquerels.sifaka,KQ027444.1,364146,364445,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCOG00000022286,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,coquerels.sifaka,KQ027444.1,440764,440994,+,MHC_II_beta,ENSPCOG00000014494,NA,protein_coding,aa_OG0000041,TRUE
MHCII,coquerels.sifaka,KQ027444.1,442256,442558,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCOG00000014494,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378112.1,30946755,30947036,-,IgC1_MHC_II_alpha,ENSSBOG00000026139,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378112.1,30947362,30947631,-,MHC_II_alpha,ENSSBOG00000026139,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378112.1,30958851,30959105,+,MHC_II_beta,ENSSBOG00000023374,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378112.1,30962960,30963292,+,IgC1_MHC_II_beta_HLA-DP,ENSSBOG00000023374,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378112.1,30970548,30970710,-,IgC1_MHC_II_alpha,JH378112.1_1:1,JH378112.1_1:1,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378112.1,30971079,30971312,-,MHC_II_alpha,JH378112.1_1:1,JH378112.1_1:1,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378112.1,30975672,30975794,+,MHC_II_beta,JH378112.1_1:2,JH378112.1_1:2,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378112.1,30985367,30985664,+,IgC1_MHC_II_beta_HLA-DQ_I-A,JH378112.1_1:3,JH378112.1_1:3,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378122.1,29964819,29965052,+,MHC_II_beta,ENSSBOG00000029243;101052015,HLA-DOB;TAP2,protein_coding;mRNA,aa_OG0012340;aa_OG0005431,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,29965505,29965804,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000029243;101052015,HLA-DOB;TAP2,protein_coding;mRNA,aa_OG0012340;aa_OG0005431,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30014813,30015040,+,MHC_II_beta,ENSSBOG00000012276;101053828,NA;LOC101053828,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30016936,30017241,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000012276;101053828,NA;LOC101053828,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30020654,30020731,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000012276;101053828,NA;LOC101053828,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378122.1,30020734,30020796,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000012276;101053828,NA;LOC101053828,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378122.1,30031232,30031531,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSBOG00000035334,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30031926,30032174,-,MHC_II_alpha,ENSSBOG00000035334,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30071901,30072125,+,MHC_II_beta,101052651,LOC101052651,mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30121173,30121469,+,MHC_II_beta,ENSSBOG00000016392,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30123975,30124280,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000016392,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30127274,30127351,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000016392,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30127354,30127419,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSBOG00000016392,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30140422,30140721,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSBOG00000021233,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30141113,30141361,-,MHC_II_alpha,ENSSBOG00000021233,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30198315,30198566,+,MHC_II_beta,ENSSBOG00000031743;101052879,NA;LOC101052879,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30201589,30201888,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000031743;101052879,NA;LOC101052879,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30235247,30235498,+,MHC_II_beta,ENSSBOG00000032160;101052977,NA;LOC101052977,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378122.1,30238780,30239079,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000032160;101052977,NA;LOC101052977,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378244.1,967024,967350,+,IgC1_MHC_II_beta_HLA-DP,JH378244.1_1:1,JH378244.1_1:1,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378253.1,2920546,2920785,+,MHC_II_alpha,JH378253.1_1:1,JH378253.1_1:1,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378315.1,6629,6928,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000013373,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,42239,42490,+,MHC_II_beta,ENSSBOG00000030119,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,45792,46091,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000030119,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,79611,79853,+,MHC_II_beta,ENSSBOG00000034096,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,82201,82281,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000034096,NA,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378315.1,82753,83085,+,IgC1_MHC_II_beta_HLA-DR,ENSSBOG00000034096,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,122915,123121,+,MHC_II_beta,101041960,LOC101041960,misc_RNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,126253,126581,+,IgC1_MHC_II_beta_HLA-DR,101041960,LOC101041960,misc_RNA,aa_OG0000041,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,159751,160035,+,IgC1_MHC_II_beta_HLA-DR,JH378315.1_2:1,JH378315.1_2:1,NA,NA,FALSE
MHCII,bolivian.squirrel.monkey,JH378315.1,173762,174082,-,IgC1_MHC_II_alpha_HLA-DR,ENSSBOG00000018669,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,bolivian.squirrel.monkey,JH378315.1,174553,174801,-,MHC_II_alpha,ENSSBOG00000018669,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13102728,13102865,-,MHC_II_beta,KV389450.1_1:1,KV389450.1_1:1,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13107573,13107723,+,IgC1_MHC_II_alpha,KV389450.1_1:2,KV389450.1_1:2,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13114970,13115263,-,IgC1_MHC_II_beta_HLA-DP,ENSCCAG00000036491,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13119182,13119418,-,MHC_II_beta,ENSCCAG00000036491,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13130760,13131029,+,MHC_II_alpha,ENSCCAG00000035048,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13131352,13131633,+,IgC1_MHC_II_alpha,ENSCCAG00000035048,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13392323,13392556,+,MHC_II_beta,ENSCCAG00000034021,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,capuchin,KV389450.1,13393008,13393307,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000034021,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,capuchin,KV389450.1,13438704,13438916,+,MHC_II_beta,ENSCCAG00000028168,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13440789,13441094,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000028168,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13444549,13444626,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000028168,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13444629,13444694,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000028168,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13454861,13455160,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCCAG00000023824,NA,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13455555,13455806,-,MHC_II_alpha,ENSCCAG00000023824,NA,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13506507,13506731,+,MHC_II_beta,ENSCCAG00000025088,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13509848,13510150,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000025088,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13513682,13513822,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000025088,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13522378,13522677,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCCAG00000023549,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13523066,13523323,-,MHC_II_alpha,ENSCCAG00000023549,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13550294,13550602,-,IgC1_MHC_II_alpha_HLA-DQ,KV389450.1_4:1,KV389450.1_4:1,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13551075,13551313,-,MHC_II_alpha,KV389450.1_4:1,KV389450.1_4:1,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13604105,13604332,+,MHC_II_beta,ENSCCAG00000025088,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13606835,13607137,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000025088,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13610148,13610225,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000025088,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13610234,13610293,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCAG00000025088,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13624288,13624587,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCCAG00000023549,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13624983,13625231,-,MHC_II_alpha,ENSCCAG00000023549,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,13681147,13681395,+,MHC_II_beta,ENSCCAG00000025004,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13746402,13746650,+,MHC_II_beta,ENSCCAG00000025004,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13749598,13749942,+,IgC1_MHC_II_beta_HLA-DR,ENSCCAG00000025004,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13792672,13792794,+,MHC_II_beta,ENSCCAG00000024284;108300094,NA;LOC108300094,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13796087,13796386,+,IgC1_MHC_II_beta_HLA-DR,ENSCCAG00000024284;108300094,NA;LOC108300094,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13834211,13834459,+,MHC_II_beta,ENSCCAG00000025004,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13837035,13837115,+,IgC1_MHC_II_beta_HLA-DR,ENSCCAG00000025004,NA,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13837593,13837895,+,IgC1_MHC_II_beta_HLA-DR,ENSCCAG00000025004,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13914103,13914335,+,MHC_II_beta,ENSCCAG00000033580,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13917453,13917784,+,IgC1_MHC_II_beta_HLA-DR,ENSCCAG00000033580,NA,protein_coding,aa_OG0000041,TRUE
MHCII,capuchin,KV389450.1,13954061,13954297,+,MHC_II_beta,KV389450.1_7:1,KV389450.1_7:1,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13978314,13978535,+,MHC_II_beta,KV389450.1_7:2,KV389450.1_7:2,NA,NA,FALSE
MHCII,capuchin,KV389450.1,13984170,13984451,+,IgC1_MHC_II_beta_HLA-DR,KV389450.1_7:3,KV389450.1_7:3,NA,NA,FALSE
MHCII,capuchin,KV389450.1,14000690,14001010,-,IgC1_MHC_II_alpha_HLA-DR,ENSCCAG00000027271,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389450.1,14001468,14001716,-,MHC_II_alpha,ENSCCAG00000027271,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,capuchin,KV389599.1,2607238,2607589,+,IgC1_MHC_II_beta_HLA-DP,KV389599.1_1:1,KV389599.1_1:1,NA,NA,FALSE
MHCII,capuchin,KV389751.1,1385702,1385842,-,MHC_II_alpha,KV389751.1_1:1,KV389751.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ201035.1,10510918,10511055,+,MHC_II_alpha,KZ201035.1_1:1,KZ201035.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ202533.1,11621374,11621722,-,IgC1_MHC_II_beta_HLA-DP,KZ202533.1_1:1,KZ202533.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ202533.1,11623050,11623398,-,IgC1_MHC_II_beta_HLA-DP,KZ202533.1_1:1,KZ202533.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ203002.1,1262,1609,-,IgC1_MHC_II_alpha_HLA-DQ,ENSANAG00000019813,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ203002.1,1957,2208,-,MHC_II_alpha,ENSANAG00000019813,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,6033,6284,+,MHC_II_alpha,ENSANAG00000025439,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,6680,6979,+,IgC1_MHC_II_alpha_HLA-DQ,ENSANAG00000025439,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,21104,21169,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000023444,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,21184,21252,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000023444,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,24285,24590,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000023444,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,27091,27315,-,MHC_II_beta,ENSANAG00000023444,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,81771,82012,+,MHC_II_alpha,105704651,LOC105704651,mRNA,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,82496,82798,+,IgC1_MHC_II_alpha_HLA-DQ,105704651,LOC105704651,mRNA,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,103536,103787,+,MHC_II_alpha,ENSANAG00000023973,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,104133,104480,+,IgC1_MHC_II_alpha_HLA-DQ,ENSANAG00000023973,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,113029,113154,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000025105,HLA-DQB2,NA,NA,FALSE
MHCII,mas.night.monkey,KZ204190.1,116699,117004,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000025105,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,119800,120024,-,MHC_II_beta,ENSANAG00000025105,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,187014,187226,-,MHC_II_beta,ENSANAG00000023444,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204190.1,275146,275445,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000023266,NA,protein_coding,aa_OG0005431,TRUE
MHCII,mas.night.monkey,KZ204190.1,275901,276134,-,MHC_II_beta,ENSANAG00000023266,NA,protein_coding,aa_OG0005431,TRUE
MHCII,mas.night.monkey,KZ204190.1,564343,564624,-,IgC1_MHC_II_alpha,ENSANAG00000025586,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,564949,565218,-,MHC_II_alpha,ENSANAG00000025586,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ204190.1,577017,577253,+,MHC_II_beta,105704670,LOC105704670,mRNA,aa_OG0020696,TRUE
MHCII,mas.night.monkey,KZ204192.1,24950,25186,+,MHC_II_beta,ENSANAG00000038389,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204192.1,30023,30382,+,IgC1_MHC_II_beta_HLA-DP,ENSANAG00000038389,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ204192.1,39752,39829,-,IgC1_MHC_II_alpha,KZ204192.1_1:1,KZ204192.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ204192.1,40204,40455,-,MHC_II_alpha,KZ204192.1_1:1,KZ204192.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ204192.1,44363,44575,+,MHC_II_beta,KZ204192.1_1:1,KZ204192.1_1:1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ204192.1,53942,54236,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KZ204192.1_1:2,KZ204192.1_1:2,NA,NA,FALSE
MHCII,mas.night.monkey,KZ205520.1,7188,7400,+,MHC_II_beta,ENSANAG00000019598,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,9953,10255,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000019598,NA,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,13286,13360,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000019598,NA,NA,NA,FALSE
MHCII,mas.night.monkey,KZ205520.1,13366,13431,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSANAG00000019598,NA,NA,NA,FALSE
MHCII,mas.night.monkey,KZ205520.1,26037,26336,-,IgC1_MHC_II_alpha_HLA-DQ,ENSANAG00000034339,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ205520.1,26732,26983,-,MHC_II_alpha,ENSANAG00000034339,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ205520.1,86894,87154,+,MHC_II_beta,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,89478,89558,+,IgC1_MHC_II_beta_HLA-DR,ENSANAG00000031923,HLA-DRB1,NA,NA,FALSE
MHCII,mas.night.monkey,KZ205520.1,90019,90318,+,IgC1_MHC_II_beta_HLA-DR,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,150629,150859,+,MHC_II_beta,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,154140,154439,+,IgC1_MHC_II_beta_HLA-DR,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,215261,215521,+,MHC_II_beta,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,219118,219450,+,IgC1_MHC_II_beta_HLA-DR,ENSANAG00000031923,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,mas.night.monkey,KZ205520.1,243021,243338,-,IgC1_MHC_II_alpha_HLA-DR,ENSANAG00000027055,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ205520.1,243809,244057,-,MHC_II_alpha,ENSANAG00000027055,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,mas.night.monkey,KZ208032.1,690,984,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KZ208032.1_1:1,KZ208032.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ009502.1,29466376,29466522,+,MHC_II_alpha,ENSCATG00000040357;105593589,NA;LOC105593589,NA,NA,FALSE
MHCII,sooty.mangabey,KQ009502.1,29469627,29469920,-,IgC1_MHC_II_beta_HLA-DP,ENSCATG00000040357;105593589,NA;LOC105593589,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ009502.1,29480744,29480989,-,MHC_II_beta,ENSCATG00000040357;105593589,NA;LOC105593589,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ009502.1,29503786,29503953,+,IgC1_MHC_II_alpha,KQ009502.1_2:1,KQ009502.1_2:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ009837.1,3619,3852,+,MHC_II_beta,ENSCATG00000005274;105589122,NA;LOC105589122,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,sooty.mangabey,KQ009837.1,4298,4615,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000005274;105589122,NA;LOC105589122,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,sooty.mangabey,KQ009991.1,18167,18448,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000035280;105590469,NA;LOC105590469,protein_coding;mRNA,aa_OG0023070,TRUE
MHCII,sooty.mangabey,KQ009991.1,20731,20979,-,MHC_II_beta,ENSCATG00000035280;105590469,NA;LOC105590469,protein_coding;mRNA,aa_OG0023070,TRUE
MHCII,sooty.mangabey,KQ011307.1,58755,59078,-,IgC1_MHC_II_alpha,ENSCATG00000039927,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ011307.1,59347,59616,-,MHC_II_alpha,ENSCATG00000039927,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ011307.1,70119,70334,+,MHC_II_beta,ENSCATG00000034842,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012252.1,12218,12445,+,MHC_II_beta,105574103,LOC105574103,mRNA,aa_OG0021258,TRUE
MHCII,sooty.mangabey,KQ012252.1,23986,24372,+,IgC1_MHC_II_beta_HLA-DR,KQ012252.1_1:1,KQ012252.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012252.1,29504,29890,+,IgC1_MHC_II_beta_HLA-DR,105574103,LOC105574103,mRNA,aa_OG0021258,TRUE
MHCII,sooty.mangabey,KQ012252.1,46669,46983,-,IgC1_MHC_II_alpha_HLA-DR,ENSCATG00000045179,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012252.1,47468,47716,-,MHC_II_alpha,ENSCATG00000045179,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012333.1,29935,30270,-,IgC1_MHC_II_beta_HLA-DP,ENSCATG00000038170,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012333.1,34327,34563,-,MHC_II_beta,ENSCATG00000038170,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012333.1,44983,45237,+,MHC_II_alpha,ENSCATG00000024393,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012333.1,45520,45834,+,IgC1_MHC_II_alpha,ENSCATG00000024393,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012333.1,314584,314817,+,MHC_II_beta,ENSCATG00000036138,NA,protein_coding,aa_OG0012340,TRUE
MHCII,sooty.mangabey,KQ012333.1,315256,315573,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000036138,NA,protein_coding,aa_OG0012340,TRUE
MHCII,sooty.mangabey,KQ012333.1,356639,356692,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ012333.1_1:1,KQ012333.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012333.1,356695,356763,+,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ012333.1_1:1,KQ012333.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012333.1,369696,369998,-,IgC1_MHC_II_alpha_HLA-DQ,105575018,LOC105575018,pseudogene,aa_OG0000002,TRUE
MHCII,sooty.mangabey,KQ012333.1,435479,435691,+,MHC_II_beta,ENSCATG00000030073,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012333.1,438224,438529,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000030073,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012333.1,441580,441657,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000030073,HLA-DQB1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012333.1,441660,441725,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000030073,HLA-DQB1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012333.1,456359,456715,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCATG00000012156,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012333.1,457054,457311,-,MHC_II_alpha,ENSCATG00000012156,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012355.1,38496,38585,-,IgC1_MHC_II_beta_HLA-DR,KQ012355.1_1:1,KQ012355.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012355.1,38751,38861,-,IgC1_MHC_II_beta_HLA-DR,KQ012355.1_1:1,KQ012355.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012355.1,84472,84804,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000032952;105575606,NA;LOC105575606,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012355.1,86753,87019,-,MHC_II_beta,ENSCATG00000032952;105575606,NA;LOC105575606,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012355.1,121234,121533,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000003044,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012355.1,123783,124031,-,MHC_II_beta,ENSCATG00000003044,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012355.1,194048,194299,+,MHC_II_alpha,ENSCATG00000031115,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012355.1,194695,194994,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCATG00000031115,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012355.1,206049,206114,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000033478,NA,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012355.1,206117,206170,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000033478,NA,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012355.1,209237,209542,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCATG00000033478,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012355.1,212077,212289,-,MHC_II_beta,ENSCATG00000033478,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012355.1,270927,271220,+,IgC1_MHC_II_alpha_HLA-DQ,105575607,LOC105575607,mRNA,aa_OG0000240,TRUE
MHCII,sooty.mangabey,KQ012355.1,285169,285237,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ012355.1_3:1,KQ012355.1_3:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012355.1,285240,285293,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ012355.1_3:1,KQ012355.1_3:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012418.1,38311,38610,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000035862,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012418.1,41126,41443,-,MHC_II_beta,ENSCATG00000035862,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012418.1,72309,72608,-,IgC1_MHC_II_beta_HLA-DR,105576726,LOC105576726,mRNA,aa_OG0023070,TRUE
MHCII,sooty.mangabey,KQ012418.1,102808,103107,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000031191;105576722,NA;LOC105576722,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012418.1,106100,106366,-,MHC_II_beta,ENSCATG00000031191;105576722,NA;LOC105576722,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012418.1,135619,135903,-,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000033360,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012418.1,138167,138391,-,MHC_II_beta,ENSCATG00000033360,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012758.1,35550,35789,+,MHC_II_beta,ENSCATG00000040113,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012758.1,38089,38388,+,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000040113,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sooty.mangabey,KQ012808.1,762462,762793,-,IgC1_MHC_II_beta_HLA-DP,KQ012808.1_1:1,KQ012808.1_1:1,NA,NA,FALSE
MHCII,sooty.mangabey,KQ012851.1,7493,7741,+,MHC_II_beta,ENSCATG00000019755,NA,protein_coding,aa_OG0023070,TRUE
MHCII,sooty.mangabey,KQ012851.1,9994,10293,+,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000019755,NA,protein_coding,aa_OG0023070,TRUE
MHCII,sooty.mangabey,KQ012851.1,39116,39382,+,MHC_II_beta,ENSCATG00000029329;105585183,NA;LOC105585183,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012851.1,45950,46242,+,MHC_II_beta,ENSCATG00000029329;105585183,NA;LOC105585183,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012851.1,48757,49041,+,IgC1_MHC_II_beta_HLA-DR,ENSCATG00000029329;105585183,NA;LOC105585183,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,sooty.mangabey,KQ012851.1,79114,79509,+,IgC1_MHC_II_beta_HLA-DR,KQ012851.1_1:1,KQ012851.1_1:1,NA,NA,FALSE
MHCII,drill,KN973601.1,44226,44465,+,MHC_II_beta,ENSMLEG00000039933,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,46728,47027,+,IgC1_MHC_II_beta_HLA-DR,ENSMLEG00000039933,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,88146,88412,+,MHC_II_beta,105536148,LOC105536148,mRNA,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,92426,92725,+,IgC1_MHC_II_beta_HLA-DR,105536148,LOC105536148,mRNA,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,123393,123767,+,IgC1_MHC_II_beta_HLA-DR,KN973601.1_1:1,KN973601.1_1:1,NA,NA,FALSE
MHCII,drill,KN973601.1,153511,153759,+,MHC_II_beta,ENSMLEG00000042745;105536147,NA;LOC105536147,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,156112,156330,+,IgC1_MHC_II_beta_HLA-DR,ENSMLEG00000042745,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973601.1,212367,212591,+,MHC_II_beta,KN973601.1_2:1,KN973601.1_2:1,NA,NA,FALSE
MHCII,drill,KN973664.1,69456,69704,+,MHC_II_alpha,ENSMLEG00000010175,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN973664.1,70189,70503,+,IgC1_MHC_II_alpha_HLA-DR,ENSMLEG00000010175,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN973664.1,97059,97445,-,IgC1_MHC_II_beta_HLA-DR,105536619,LOC105536619,pseudogene,aa_OG0021258,TRUE
MHCII,drill,KN973664.1,104839,105057,-,MHC_II_beta,105536619,LOC105536619,pseudogene,aa_OG0021258,TRUE
MHCII,drill,KN973761.1,118156,118284,+,MHC_II_alpha,ENSMLEG00000013191,NA,NA,NA,FALSE
MHCII,drill,KN973761.1,121389,121682,-,IgC1_MHC_II_beta_HLA-DP,ENSMLEG00000013191,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973761.1,134056,134295,-,MHC_II_beta,ENSMLEG00000013191,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,1358,1582,+,MHC_II_beta,ENSMLEG00000034540,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,4099,4404,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000034540,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,17062,17361,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLEG00000010681,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN973866.1,17756,18007,-,MHC_II_alpha,ENSMLEG00000010681,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN973866.1,76707,76952,+,MHC_II_beta,ENSMLEG00000033914,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,79176,79475,+,IgC1_MHC_II_beta_HLA-DR,ENSMLEG00000033914,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,138488,138712,+,MHC_II_beta,ENSMLEG00000022920,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN973866.1,140960,141127,+,IgC1_MHC_II_beta_HLA-DR,ENSMLEG00000022920,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN974281.1,11244,11447,+,MHC_II_alpha,105540230,LOC105540230,mRNA,aa_OG0023115,TRUE
MHCII,drill,KN974281.1,11866,12145,+,IgC1_MHC_II_alpha,105540230,LOC105540230,mRNA,aa_OG0023115,TRUE
MHCII,drill,KN974281.1,22944,23279,-,IgC1_MHC_II_beta_HLA-DP,ENSMLEG00000027648,NA,NA,NA,FALSE
MHCII,drill,KN974281.1,24824,25159,-,IgC1_MHC_II_beta_HLA-DP,ENSMLEG00000027648,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN974281.1,29205,29441,-,MHC_II_beta,ENSMLEG00000027648,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN974281.1,40955,41056,+,MHC_II_alpha,ENSMLEG00000029555,NA,NA,NA,FALSE
MHCII,drill,KN974281.1,42381,42635,+,MHC_II_alpha,ENSMLEG00000029555,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN974281.1,42981,43262,+,IgC1_MHC_II_alpha,ENSMLEG00000029555,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN974366.1,3982,4047,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000042154,NA,NA,NA,FALSE
MHCII,drill,KN974366.1,4050,4136,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000042154,NA,NA,NA,FALSE
MHCII,drill,KN974366.1,7174,7479,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000042154,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN974366.1,9998,10210,-,MHC_II_beta,ENSMLEG00000042154,NA,protein_coding,aa_OG0000041,TRUE
MHCII,drill,KN978094.1,5264,5563,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMLEG00000034981,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN978094.1,5950,6204,-,MHC_II_alpha,ENSMLEG00000034981,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN979060.1,232965,233296,+,IgC1_MHC_II_beta_HLA-DP,KN979060.1_1:1,KN979060.1_1:1,NA,NA,FALSE
MHCII,drill,KN979237.1,2494,2730,-,MHC_II_beta,105531109,LOC105531109,mRNA,aa_OG0020696,TRUE
MHCII,drill,KN979237.1,11006,11107,+,MHC_II_alpha,ENSMLEG00000035946,NA,NA,NA,FALSE
MHCII,drill,KN979237.1,12432,12686,+,MHC_II_alpha,ENSMLEG00000035946,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN979237.1,13032,13313,+,IgC1_MHC_II_alpha,ENSMLEG00000035946,NA,protein_coding,aa_OG0000240,TRUE
MHCII,drill,KN979237.1,16363,16644,+,IgC1_MHC_II_alpha,105531121,LOC105531121,mRNA,aa_OG0000240,TRUE
MHCII,drill,KN979237.1,339542,339775,+,MHC_II_beta,ENSMLEG00000044332,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,drill,KN979237.1,340222,340539,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000044332,HLA-DOB,NA,NA,FALSE
MHCII,drill,KN979237.1,341364,341630,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000044332,HLA-DOB,NA,NA,FALSE
MHCII,drill,KN979237.1,346217,346450,+,MHC_II_beta,ENSMLEG00000044332,HLA-DOB,NA,NA,FALSE
MHCII,drill,KN979237.1,346897,347214,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMLEG00000044332,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,drill,KN979237.1,444934,445128,-,IgC1_MHC_II_alpha_HLA-DQ,KN979237.1_3:1,KN979237.1_3:1,NA,NA,FALSE
MHCII,drill,KN979237.1,445615,445864,-,MHC_II_alpha,KN979237.1_3:1,KN979237.1_3:1,NA,NA,FALSE
MHCII,olive.baboon,4,31840883,31841131,+,MHC_II_alpha,ENSPANG00000033093,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,31841615,31841929,+,IgC1_MHC_II_alpha_HLA-DR,ENSPANG00000033093,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,31858521,31858907,-,IgC1_MHC_II_beta_HLA-DR,4_1:1,4_1:1,NA,NA,FALSE
MHCII,olive.baboon,4,31865477,31865704,-,MHC_II_beta,101011171,LOC101011171,mRNA,aa_OG0021258,TRUE
MHCII,olive.baboon,4,31913378,31913668,-,IgC1_MHC_II_beta_HLA-DR,4_2:1,4_2:1,NA,NA,FALSE
MHCII,olive.baboon,4,31973110,31973358,+,MHC_II_alpha,ENSPANG00000033635,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,31973751,31974050,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPANG00000033635,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,31986291,31986356,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPANG00000009109,NA,NA,NA,FALSE
MHCII,olive.baboon,4,31986359,31986415,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPANG00000009109,NA,NA,NA,FALSE
MHCII,olive.baboon,4,31989484,31989789,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPANG00000009109,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,4,31992312,31992524,-,MHC_II_beta,ENSPANG00000009109,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,4,32087931,32088224,+,IgC1_MHC_II_alpha_HLA-DQ,4_4:1,4_4:1,NA,NA,FALSE
MHCII,olive.baboon,4,32103423,32103491,-,IgC1_MHC_II_beta_HLA-DQ_I-A,4_4:2,4_4:2,NA,NA,FALSE
MHCII,olive.baboon,4,32103494,32103547,-,IgC1_MHC_II_beta_HLA-DQ_I-A,4_4:2,4_4:2,NA,NA,FALSE
MHCII,olive.baboon,4,32143980,32144297,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPANG00000016388,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,olive.baboon,4,32144744,32144977,-,MHC_II_beta,ENSPANG00000016388,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,olive.baboon,4,32430380,32430661,-,IgC1_MHC_II_alpha,ENSPANG00000018967,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,32431007,32431261,-,MHC_II_alpha,ENSPANG00000018967,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,olive.baboon,4,32432555,32432656,-,MHC_II_alpha,ENSPANG00000018967,HLA-DPA1,NA,NA,FALSE
MHCII,olive.baboon,4,32441060,32441296,+,MHC_II_beta,ENSPANG00000005764,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,4,32445270,32445605,+,IgC1_MHC_II_beta_HLA-DP,ENSPANG00000005764,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,4,32450484,32450624,-,MHC_II_alpha,4_6:1,4_6:1,NA,NA,FALSE
MHCII,olive.baboon,4,32473446,32473685,+,MHC_II_beta,101019833,LOC101019833,pseudogene,aa_OG0020696,TRUE
MHCII,olive.baboon,4,32484125,32484432,+,IgC1_MHC_II_beta_HLA-DQ_I-A,101019833,LOC101019833,pseudogene,aa_OG0020696,TRUE
MHCII,olive.baboon,4,32487530,32487676,-,MHC_II_alpha,101019833,LOC101019833,NA,NA,FALSE
MHCII,olive.baboon,5,42341984,42342315,+,IgC1_MHC_II_beta_HLA-DP,5_1:1,5_1:1,NA,NA,FALSE
MHCII,olive.baboon,KZ097497.1,39081,39350,-,MHC_II_alpha,101000640,LOC101000640,mRNA,aa_OG0000240,TRUE
MHCII,olive.baboon,KZ097497.1,50569,50778,+,MHC_II_beta,ENSPANG00000023362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097497.1,54706,54984,+,IgC1_MHC_II_beta_HLA-DP,ENSPANG00000023362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097497.1,61415,61703,-,IgC1_MHC_II_alpha,101001663,LOC101001663,mRNA,aa_OG0023115,TRUE
MHCII,olive.baboon,KZ097505.1,35363,35590,+,MHC_II_beta,ENSPANG00000031605;101009667,NA;LOC101009667,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097505.1,37858,38100,+,IgC1_MHC_II_beta_HLA-DR,ENSPANG00000031605;101009667,NA;LOC101009667,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097505.1,38153,38347,+,IgC1_MHC_II_beta_HLA-DR,ENSPANG00000031605;101009667,NA;LOC101009667,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097505.1,39224,39310,+,IgC1_MHC_II_beta_HLA-DR,101009667,LOC101009667,mRNA,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097614.1,35091,35489,-,IgC1_MHC_II_beta_HLA-DR,ENSPANG00000018690,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ097614.1,69370,69609,-,MHC_II_beta,ENSPANG00000018690,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ098251.1,13663,13962,-,IgC1_MHC_II_beta_HLA-DR,101014430,LOC101014430,mRNA,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ098351.1,3795,4043,+,MHC_II_beta,ENSPANG00000007521,NA,protein_coding,aa_OG0000041,TRUE
MHCII,olive.baboon,KZ098351.1,6562,6861,+,IgC1_MHC_II_beta_HLA-DR,ENSPANG00000007521,NA,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,137660161,137660307,+,MHC_II_alpha,102139636,LOC102139636,NA,NA,FALSE
MHCII,crab.eating.macaque,4,137663425,137663718,-,IgC1_MHC_II_beta_HLA-DP,102139636,LOC102139636,pseudogene,aa_OG0020696,TRUE
MHCII,crab.eating.macaque,4,137712834,137713064,+,MHC_II_alpha,4_2:1,4_2:1,NA,NA,FALSE
MHCII,crab.eating.macaque,4,137713461,137713749,+,IgC1_MHC_II_alpha,4_2:1,4_2:1,NA,NA,FALSE
MHCII,crab.eating.macaque,4,137720540,137720875,-,IgC1_MHC_II_beta_HLA-DP,ENSMFAG00000042684,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,137725009,137725218,-,MHC_II_beta,ENSMFAG00000042684,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,137733740,137733841,+,MHC_II_alpha,ENSMFAG00000035329,HLA-DPA1,NA,NA,FALSE
MHCII,crab.eating.macaque,4,137735135,137735389,+,MHC_II_alpha,ENSMFAG00000035329,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,4,137735735,137736016,+,IgC1_MHC_II_alpha,ENSMFAG00000035329,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,4,138025859,138026092,+,MHC_II_beta,ENSMFAG00000003652,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,crab.eating.macaque,4,138026556,138026855,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMFAG00000003652,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,crab.eating.macaque,4,138082935,138083184,-,MHC_II_alpha,102140776,LOC102140776,pseudogene,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,4,138127930,138128235,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMFAG00000006890,NA,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138131289,138131345,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMFAG00000006890,NA,NA,NA,FALSE
MHCII,crab.eating.macaque,4,138131348,138131413,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMFAG00000006890,NA,NA,NA,FALSE
MHCII,crab.eating.macaque,4,138143862,138144224,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMFAG00000002949;102141176,HLA-DQA1;LOC102141176,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,4,138206888,138207187,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000000676;102141582,HLA-DRB5;LOC102141582,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138230228,138230491,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000044231,NA,NA,NA,FALSE
MHCII,crab.eating.macaque,4,138233178,138233345,+,MHC_II_beta,ENSMFAG00000044231,NA,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138236745,138237035,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000044231;102141962,NA;LOC102141962,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138326590,138326985,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000044231,NA,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138355003,138355227,+,MHC_II_beta,ENSMFAG00000000676,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138357506,138357805,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000000676,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,4,138429442,138429657,+,MHC_II_beta,102142740,LOC102142740,mRNA,aa_OG0021258,TRUE
MHCII,crab.eating.macaque,4,138442017,138442301,+,IgC1_MHC_II_beta_HLA-DR,102142740,LOC102142740,mRNA,aa_OG0021258,TRUE
MHCII,crab.eating.macaque,4,138457983,138458297,-,IgC1_MHC_II_alpha_HLA-DR,ENSMFAG00000032157,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,4,138458781,138459029,-,MHC_II_alpha,ENSMFAG00000032157,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,5,43209008,43209339,+,IgC1_MHC_II_beta_HLA-DP,5_1:1,5_1:1,NA,NA,FALSE
MHCII,crab.eating.macaque,KE145587.1,48948,49253,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMFAG00000005338;102133044,NA;LOC102133044,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,KE145587.1,58133,58432,-,IgC1_MHC_II_alpha_HLA-DQ,ENSMFAG00000026214,NA,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,KE145587.1,58827,59078,-,MHC_II_alpha,ENSMFAG00000026214,NA,protein_coding,aa_OG0000240,TRUE
MHCII,crab.eating.macaque,KE145595.1,29952,30200,+,MHC_II_beta,ENSMFAG00000000976,NA,protein_coding,aa_OG0000041,TRUE
MHCII,crab.eating.macaque,KE145595.1,31918,31986,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000000976,NA,NA,NA,FALSE
MHCII,crab.eating.macaque,KE145595.1,32478,32777,+,IgC1_MHC_II_beta_HLA-DR,ENSMFAG00000000976,NA,protein_coding,aa_OG0000041,TRUE
MHCII,macaque,4,136375109,136375255,+,MHC_II_alpha,4_1:1,4_1:1,NA,NA,FALSE
MHCII,macaque,4,136378352,136378645,-,IgC1_MHC_II_beta_HLA-DP,4_1:1,4_1:1,NA,NA,FALSE
MHCII,macaque,4,136389501,136389743,-,MHC_II_beta,4_1:2,4_1:2,NA,NA,FALSE
MHCII,macaque,4,136412903,136413106,+,MHC_II_alpha,ENSMMUG00000019371,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,4,136413526,136413805,+,IgC1_MHC_II_alpha,ENSMMUG00000019371,NA,NA,NA,FALSE
MHCII,macaque,4,136420568,136420903,-,IgC1_MHC_II_beta_HLA-DP,717969,MAMU-DPB,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,136424947,136425183,-,MHC_II_beta,717969,MAMU-DPB,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,136434023,136434124,+,MHC_II_alpha,ENSMMUG00000019371,NA,NA,NA,FALSE
MHCII,macaque,4,136435414,136435668,+,MHC_II_alpha,ENSMMUG00000019371,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,4,136436014,136436295,+,IgC1_MHC_II_alpha,ENSMMUG00000019371,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,4,136717981,136718214,+,MHC_II_beta,ENSMMUG00000011293,MAMU-DOB,protein_coding,aa_OG0005431,TRUE
MHCII,macaque,4,136718667,136718966,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMMUG00000011293,MAMU-DOB,protein_coding,aa_OG0005431,TRUE
MHCII,macaque,4,136770896,136771145,-,MHC_II_alpha,ENSMMUG00000060200,NA,lncRNA,aa_OG0000240,TRUE
MHCII,macaque,4,136830911,136831123,+,MHC_II_beta,716823,MAMU-DQB1,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,136833913,136834218,+,IgC1_MHC_II_beta_HLA-DQ_I-A,716823,MAMU-DQB1,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,136837253,136837318,+,IgC1_MHC_II_beta_HLA-DQ_I-A,716823,MAMU-DQB1,NA,NA,FALSE
MHCII,macaque,4,136837321,136837386,+,IgC1_MHC_II_beta_HLA-DQ_I-A,716823,MAMU-DQB1,NA,NA,FALSE
MHCII,macaque,4,136848139,136848582,-,IgC1_MHC_II_alpha_HLA-DQ,720582,MAMU-DQA1,mRNA,aa_OG0000240,TRUE
MHCII,macaque,4,136848834,136849085,-,MHC_II_alpha,720582,MAMU-DQA1,mRNA,aa_OG0000240,TRUE
MHCII,macaque,4,136913534,136913779,+,MHC_II_beta,ENSMMUG00000029799,MAMU-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,macaque,4,136916038,136916337,+,IgC1_MHC_II_beta_HLA-DR,ENSMMUG00000029799,MAMU-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,macaque,4,136945246,136945413,+,MHC_II_beta,716685,LOC716685,NA,NA,FALSE
MHCII,macaque,4,136948441,136948731,+,IgC1_MHC_II_beta_HLA-DR,716685,LOC716685,pseudogene,aa_OG0000041,TRUE
MHCII,macaque,4,136981103,136981498,+,IgC1_MHC_II_beta_HLA-DR,ENSMMUG00000029799;100428435,MAMU-DRB1;LOC100428435,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,137011962,137012141,+,MHC_II_beta,100428228,MAMU-DRB5,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,137012147,137012260,+,MHC_II_beta,100428228,MAMU-DRB5,mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,137014473,137014772,+,IgC1_MHC_II_beta_HLA-DR,ENSMMUG00000029799;100428228,MAMU-DRB1;MAMU-DRB5,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,macaque,4,137054778,137054984,+,MHC_II_beta,106997902,LOC106997902,mRNA,aa_OG0021258,TRUE
MHCII,macaque,4,137061851,137062237,+,IgC1_MHC_II_beta_HLA-DR,106997902,LOC106997902,mRNA,aa_OG0021258,TRUE
MHCII,macaque,4,137077988,137078302,-,IgC1_MHC_II_alpha_HLA-DR,ENSMMUG00000039082,MAMU-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,macaque,4,137078786,137079034,-,MHC_II_alpha,ENSMMUG00000039082,MAMU-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,macaque,5,42617905,42618236,+,IgC1_MHC_II_beta_HLA-DP,5_1:1,5_1:1,NA,NA,FALSE
MHCII,macaque,13,1991754,1991831,+,IgC1_MHC_II_alpha,13_1:1,13_1:1,NA,NA,FALSE
MHCII,macaque,QNVO02000361.1,12187,12468,-,IgC1_MHC_II_alpha,ENSMMUG00000056183,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,QNVO02000361.1,12814,13068,-,MHC_II_alpha,ENSMMUG00000056183,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,QNVO02000361.1,23645,23881,+,MHC_II_beta,114675357,LOC114675357,mRNA,aa_OG0000041,TRUE
MHCII,macaque,QNVO02000361.1,27980,28315,+,IgC1_MHC_II_beta_HLA-DP,114675357,LOC114675357,mRNA,aa_OG0000041,TRUE
MHCII,macaque,QNVO02000361.1,35101,35389,-,IgC1_MHC_II_alpha,ENSMMUG00000056183,NA,NA,NA,FALSE
MHCII,macaque,QNVO02000361.1,35807,36010,-,MHC_II_alpha,ENSMMUG00000056183,NA,protein_coding,aa_OG0019328,TRUE
MHCII,macaque,QNVO02000361.1,59203,59445,+,MHC_II_beta,ENSMMUG00000058167;100424399,NA;LOC100424399,protein_coding;pseudogene,aa_OG0020696,TRUE
MHCII,macaque,QNVO02000361.1,70296,70594,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMMUG00000056183,NA,NA,NA,FALSE
MHCII,macaque,QNVO02000361.1,73696,73842,-,MHC_II_alpha,ENSMMUG00000056183,NA,protein_coding,aa_OG0019328,TRUE
MHCII,pig.tailed.macaque,JZLF01088693.1,1165,1314,-,IgC1_MHC_II_beta_HLA-DQ_I-A,105481944,LOC105481944,mRNA,aa_OG0024533,TRUE
MHCII,pig.tailed.macaque,KQ005050.1,5421772,5422103,-,IgC1_MHC_II_beta_HLA-DP,KQ005050.1_1:1,KQ005050.1_1:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ007229.1,588,887,+,IgC1_MHC_II_beta_HLA-DR,105467354,LOC105467354,mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,34093,34359,+,MHC_II_beta,ENSMNEG00000042321;105467360,NA;LOC105467360,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,37370,37654,+,IgC1_MHC_II_beta_HLA-DR,ENSMNEG00000042321;105467360,NA;LOC105467360,protein_coding;pseudogene,aa_OG0021742;aa_OG0019608,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,70324,70719,+,IgC1_MHC_II_beta_HLA-DR,105467361,LOC105467361,mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,100790,101023,+,MHC_II_beta,ENSMNEG00000042461,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,103261,103560,+,IgC1_MHC_II_beta_HLA-DR,ENSMNEG00000042461,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,147903,148118,+,MHC_II_beta,KQ007229.1_1:1,KQ007229.1_1:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ007229.1,157100,157384,+,IgC1_MHC_II_beta_HLA-DR,KQ007229.1_1:2,KQ007229.1_1:2,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ007229.1,174195,174509,-,IgC1_MHC_II_alpha_HLA-DR,ENSMNEG00000019196,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ007229.1,174994,175242,-,MHC_II_alpha,ENSMNEG00000019196,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ007955.1,45998,46243,+,MHC_II_alpha,ENSMNEG00000033920,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ007955.1,46578,46922,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMNEG00000033920,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ007955.1,59548,59853,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMNEG00000021362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007955.1,62390,62602,-,MHC_II_beta,ENSMNEG00000021362,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ007955.1,129834,130121,+,IgC1_MHC_II_alpha_HLA-DQ,KQ007955.1_1:1,KQ007955.1_1:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,9281,9667,-,IgC1_MHC_II_beta_HLA-DR,ENSMNEG00000020869,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,14589,14816,-,MHC_II_beta,KQ009016.1_1:1,KQ009016.1_1:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,71947,72192,-,MHC_II_beta,ENSMNEG00000020869;105474414,NA;LOC105474414,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,99549,99848,-,IgC1_MHC_II_beta_HLA-DR,ENSMNEG00000044119;105474570,NA;LOC105474570,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,140962,141261,-,IgC1_MHC_II_beta_HLA-DR,KQ009016.1_2:1,KQ009016.1_2:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,172254,172553,-,IgC1_MHC_II_beta_HLA-DR,ENSMNEG00000044119,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,174855,175082,-,MHC_II_beta,ENSMNEG00000044119,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,263076,263333,+,MHC_II_alpha,ENSMNEG00000038603,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,263729,264028,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMNEG00000038603,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,284284,284349,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ009016.1_3:1,KQ009016.1_3:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,284352,284429,-,IgC1_MHC_II_beta_HLA-DQ_I-A,KQ009016.1_3:1,KQ009016.1_3:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,287469,287774,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMNEG00000027969,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,290290,290502,-,MHC_II_beta,ENSMNEG00000027969,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,320973,321222,+,MHC_II_alpha,KQ009016.1_4:1,KQ009016.1_4:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,375198,375497,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMNEG00000043598,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,375962,376195,-,MHC_II_beta,ENSMNEG00000043598,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,685517,685798,-,IgC1_MHC_II_alpha,ENSMNEG00000040889,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,686144,686398,-,MHC_II_alpha,ENSMNEG00000040889,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,687692,687793,-,MHC_II_alpha,ENSMNEG00000040889,HLA-DPA1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,696649,696885,+,MHC_II_beta,ENSMNEG00000029725;105474434,HLA-DPB1;LOC105474434,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,704441,704677,+,MHC_II_beta,ENSMNEG00000029725,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,708726,709061,+,IgC1_MHC_II_beta_HLA-DP,ENSMNEG00000029725,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,716232,716520,-,IgC1_MHC_II_alpha,KQ009016.1_6:1,KQ009016.1_6:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,716934,717137,-,MHC_II_alpha,KQ009016.1_6:1,KQ009016.1_6:1,NA,NA,FALSE
MHCII,pig.tailed.macaque,KQ009016.1,741000,741245,+,MHC_II_beta,ENSMNEG00000010287;105474573,NA;LOC105474573,protein_coding;pseudogene,aa_OG0000041;aa_OG0020696,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,762896,763216,+,IgC1_MHC_II_beta_HLA-DP,ENSMNEG00000010287;105474436,NA;LOC105474436,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,pig.tailed.macaque,KQ009016.1,766298,766444,-,MHC_II_alpha,KQ009016.1_7:1,KQ009016.1_7:1,NA,NA,FALSE
MHCII,vervet.agm,17,38944068,38944214,+,MHC_II_alpha,17_1:1,17_1:1,NA,NA,FALSE
MHCII,vervet.agm,17,38947318,38947611,-,IgC1_MHC_II_beta_HLA-DP,17_1:1,17_1:1,NA,NA,FALSE
MHCII,vervet.agm,17,38958442,38958687,-,MHC_II_beta,103221680,LOC103221680,pseudogene,aa_OG0020696,TRUE
MHCII,vervet.agm,17,38990131,38990469,+,MHC_II_alpha,17_2:1,17_2:1,NA,NA,FALSE
MHCII,vervet.agm,17,38990752,38991031,+,IgC1_MHC_II_alpha,17_2:1,17_2:1,NA,NA,FALSE
MHCII,vervet.agm,17,38997818,38998168,-,IgC1_MHC_II_beta_HLA-DP,ENSCSAG00000009461,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39002235,39002462,-,MHC_II_beta,ENSCSAG00000009461,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39013118,39013387,+,MHC_II_alpha,ENSCSAG00000009455,NA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,17,39013656,39013979,+,IgC1_MHC_II_alpha,ENSCSAG00000009455,NA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,17,39297493,39297726,+,MHC_II_beta,ENSCSAG00000009402,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,vervet.agm,17,39298166,39298483,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCSAG00000009402,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,vervet.agm,17,39353993,39354286,-,IgC1_MHC_II_alpha_HLA-DQ,17_3:1,17_3:1,NA,NA,FALSE
MHCII,vervet.agm,17,39408481,39408693,+,MHC_II_beta,ENSCSAG00000009394,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39411216,39411521,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCSAG00000009394,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39414566,39414622,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCSAG00000009394,NA,NA,NA,FALSE
MHCII,vervet.agm,17,39414625,39414690,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCSAG00000009394,NA,NA,NA,FALSE
MHCII,vervet.agm,17,39423939,39424295,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCSAG00000009389,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,17,39424629,39424877,-,MHC_II_alpha,ENSCSAG00000009389,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,17,39478953,39479198,+,MHC_II_beta,ENSCSAG00000009383;103221700,HLA-DRB5;LOC103221700,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39481478,39481777,+,IgC1_MHC_II_beta_HLA-DR,103221700,LOC103221700,mRNA,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39510991,39511242,+,MHC_II_beta,103221699,LOC103221699,pseudogene,aa_OG0019608,TRUE
MHCII,vervet.agm,17,39545822,39546217,+,IgC1_MHC_II_beta_HLA-DR,17_5:1,17_5:1,NA,NA,FALSE
MHCII,vervet.agm,17,39559233,39559463,+,MHC_II_beta,103221702,LOC103221702,mRNA,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39561753,39562052,+,IgC1_MHC_II_beta_HLA-DR,ENSCSAG00000009383;103221702,HLA-DRB5;LOC103221702,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,vervet.agm,17,39601332,39601563,+,MHC_II_beta,ENSCSAG00000009375,NA,protein_coding,aa_OG0021258,TRUE
MHCII,vervet.agm,17,39608401,39608787,+,IgC1_MHC_II_beta_HLA-DR,17_6:1,17_6:1,NA,NA,FALSE
MHCII,vervet.agm,17,39624821,39625135,-,IgC1_MHC_II_alpha_HLA-DR,ENSCSAG00000009368,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,17,39625619,39625867,-,MHC_II_alpha,ENSCSAG00000009368,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,27,6934308,6934627,-,IgC1_MHC_II_beta_HLA-DP,27_1:1,27_1:1,NA,NA,FALSE
MHCII,vervet.agm,AQIB01158228.1,5451,5678,-,MHC_II_beta,ENSCSAG00000018303,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,AQIB01158289.1,2990,3136,-,MHC_II_alpha,AQIB01158289.1_1:1,AQIB01158289.1_1:1,NA,NA,FALSE
MHCII,vervet.agm,KE148040.1,33065,33388,-,IgC1_MHC_II_alpha,ENSCSAG00000018284,NA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,KE148040.1,33657,33926,-,MHC_II_alpha,ENSCSAG00000018284,NA,protein_coding,aa_OG0000240,TRUE
MHCII,vervet.agm,KE148040.1,35225,35326,-,MHC_II_alpha,ENSCSAG00000018284,NA,NA,NA,FALSE
MHCII,vervet.agm,KE148044.1,3909,4208,-,IgC1_MHC_II_beta_HLA-DR,ENSCSAG00000018300,NA,protein_coding,aa_OG0000041,TRUE
MHCII,vervet.agm,KE148044.1,11304,11549,-,MHC_II_beta,ENSCSAG00000018300,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1260175,1260423,+,MHC_II_alpha,ENSCANG00000030585,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1260903,1261217,+,IgC1_MHC_II_alpha_HLA-DR,ENSCANG00000030585,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1276792,1277094,-,IgC1_MHC_II_beta_HLA-DR,105513817,LOC105513817,misc_RNA,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1283999,1284061,-,MHC_II_beta,105513817,LOC105513817,misc_RNA,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1284087,1284200,-,MHC_II_beta,105513817,LOC105513817,misc_RNA,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1345751,1346050,-,IgC1_MHC_II_beta_HLA-DR,ENSCANG00000034868,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1348898,1349125,-,MHC_II_beta,ENSCANG00000034868,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1409987,1410286,-,IgC1_MHC_II_beta_HLA-DR,ENSCANG00000033971,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1412841,1413089,-,MHC_II_beta,ENSCANG00000033971,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1469835,1470092,+,MHC_II_alpha,ENSCANG00000034338,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1470488,1470787,+,IgC1_MHC_II_alpha_HLA-DQ,ENSCANG00000034338,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1484925,1485077,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCANG00000032768,HLA-DQB1,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1488135,1488440,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCANG00000032768,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1490976,1491188,-,MHC_II_beta,ENSCANG00000032768,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1549779,1550063,+,IgC1_MHC_II_alpha_HLA-DQ,KN980895.1_2:1,KN980895.1_2:1,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1579188,1579505,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCANG00000038884,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,angola.colobus,KN980895.1,1579945,1580178,-,MHC_II_beta,ENSCANG00000038884,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,angola.colobus,KN980895.1,1865846,1866169,-,IgC1_MHC_II_alpha,ENSCANG00000041686,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1866454,1866723,-,MHC_II_alpha,ENSCANG00000041686,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN980895.1,1868022,1868123,-,MHC_II_alpha,ENSCANG00000041686,HLA-DPA1,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1877358,1877594,+,MHC_II_beta,ENSCANG00000033374,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1882317,1882601,+,IgC1_MHC_II_beta_HLA-DP,ENSCANG00000033374,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980895.1,1889804,1890136,-,IgC1_MHC_II_alpha,KN980895.1_4:1,KN980895.1_4:1,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1890567,1890674,-,MHC_II_alpha,KN980895.1_4:1,KN980895.1_4:1,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1895472,1895600,+,MHC_II_beta,KN980895.1_4:2,KN980895.1_4:2,NA,NA,FALSE
MHCII,angola.colobus,KN980895.1,1928284,1928445,+,MHC_II_beta,105513803,LOC105513803,mRNA,aa_OG0020696,TRUE
MHCII,angola.colobus,KN980938.1,14459684,14459830,+,MHC_II_alpha,105514272,LOC105514272,NA,NA,FALSE
MHCII,angola.colobus,KN980938.1,14462923,14463159,-,IgC1_MHC_II_beta_HLA-DP,105514272,LOC105514272,mRNA,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980938.1,14477915,14477992,-,MHC_II_beta,105514273,LOC105514273,mRNA,aa_OG0020696,TRUE
MHCII,angola.colobus,KN980938.1,14508483,14508842,-,IgC1_MHC_II_beta_HLA-DP,ENSCANG00000031435,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN980938.1,14512743,14512979,-,MHC_II_beta,ENSCANG00000031435,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985657.1,7352,7582,+,MHC_II_beta,ENSCANG00000039005,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985657.1,10092,10397,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCANG00000039005,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985657.1,23393,23674,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCANG00000014207,NA,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN985657.1,24088,24339,-,MHC_II_alpha,ENSCANG00000014207,NA,protein_coding,aa_OG0000240,TRUE
MHCII,angola.colobus,KN985657.1,103540,103785,+,MHC_II_beta,ENSCANG00000021172,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985657.1,106926,107225,+,IgC1_MHC_II_beta_HLA-DR,ENSCANG00000021172,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985657.1,148234,148401,+,MHC_II_beta,105501362,LOC105501362,pseudogene,aa_OG0000461,TRUE
MHCII,angola.colobus,KN985657.1,152947,153259,+,IgC1_MHC_II_beta_HLA-DR,105501362,LOC105501362,pseudogene,aa_OG0000461,TRUE
MHCII,angola.colobus,KN985667.1,6100971,6101311,-,IgC1_MHC_II_beta_HLA-DP,KN985667.1_1:1,KN985667.1_1:1,NA,NA,FALSE
MHCII,angola.colobus,KN985775.1,37972,38271,-,IgC1_MHC_II_beta_HLA-DR,ENSCANG00000030023,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985775.1,40544,40795,-,MHC_II_beta,ENSCANG00000030023,NA,protein_coding,aa_OG0000041,TRUE
MHCII,angola.colobus,KN985775.1,69706,70104,-,IgC1_MHC_II_beta_HLA-DR,KN985775.1_1:1,KN985775.1_1:1,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01003310.1,739036,739376,+,IgC1_MHC_II_beta_HLA-DP,MCGX01003310.1_1:1,MCGX01003310.1_1:1,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,333443,333589,+,MHC_II_alpha,ENSRBIG00000033755;108540290,NA;LOC108540290,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,336696,336989,-,IgC1_MHC_II_beta_HLA-DP,ENSRBIG00000033755;108540290,NA;LOC108540290,protein_coding;misc_RNA;mRNA,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,347762,348007,-,MHC_II_beta,ENSRBIG00000033755;108540290,NA;LOC108540290,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,378703,378792,+,MHC_II_alpha,MCGX01006596.1_2:1,MCGX01006596.1_2:1,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,379217,379549,+,IgC1_MHC_II_alpha,MCGX01006596.1_2:1,MCGX01006596.1_2:1,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,387003,387338,-,IgC1_MHC_II_beta_HLA-DP,ENSRBIG00000040381,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,391369,391617,-,MHC_II_beta,ENSRBIG00000040381,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,402667,402921,+,MHC_II_alpha,ENSRBIG00000033377,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01006596.1,403207,403530,+,IgC1_MHC_II_alpha,ENSRBIG00000033377,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,255981,256214,+,MHC_II_beta,ENSRBIG00000039119,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,256654,256971,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRBIG00000039119,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,284865,285158,-,IgC1_MHC_II_alpha_HLA-DQ,108512971,LOC108512971,pseudogene,aa_OG0000002,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,343844,344056,+,MHC_II_beta,ENSRBIG00000031872,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,346613,346918,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRBIG00000031872,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,349676,349741,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRBIG00000031872,NA,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,349744,349809,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRBIG00000031872,NA,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,359971,360252,-,IgC1_MHC_II_alpha_HLA-DQ,ENSRBIG00000031838,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01010691.1,360662,360916,-,MHC_II_alpha,ENSRBIG00000031838,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,413945,414193,+,MHC_II_alpha,ENSRBIG00000032211,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,414677,414991,+,IgC1_MHC_II_alpha_HLA-DR,ENSRBIG00000032211,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,427114,427416,-,IgC1_MHC_II_beta_HLA-DR,108519882;108519883,LOC108519882;LOC108519883,pseudogene;ncRNA,aa_OG0000002;aa_OG0021258,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,434225,434377,-,MHC_II_beta,108519882,LOC108519882,pseudogene,aa_OG0000002,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,434403,434531,-,MHC_II_beta,108519882,LOC108519882,pseudogene,aa_OG0000002,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,474253,474552,-,IgC1_MHC_II_beta_HLA-DR,ENSRBIG00000034191,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,476973,477218,-,MHC_II_beta,ENSRBIG00000034191,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,528334,528633,-,IgC1_MHC_II_beta_HLA-DR,ENSRBIG00000038672,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01016910.1,531453,531698,-,MHC_II_beta,ENSRBIG00000038672,NA,protein_coding,aa_OG0000041,TRUE
MHCII,black.snub.nosed.monkey,MCGX01023497.1,222339,222581,-,IgC1_MHC_II_beta_HLA-DR,MCGX01023497.1_1:1,MCGX01023497.1_1:1,NA,NA,FALSE
MHCII,black.snub.nosed.monkey,MCGX01089128.1,1614,1913,-,IgC1_MHC_II_beta_HLA-DR,108525918,LOC108525918,mRNA,aa_OG0032240,TRUE
MHCII,golden.snub.nosed.monkey,KN294245.1,1389234,1389574,+,IgC1_MHC_II_beta_HLA-DP,KN294245.1_1:1,KN294245.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN294462.1,20302,20535,+,MHC_II_beta,ENSRROG00000037331,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,20975,21292,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRROG00000037331,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,51813,52106,-,IgC1_MHC_II_alpha_HLA-DQ,KN294462.1_1:1,KN294462.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN294462.1,112489,112719,+,MHC_II_beta,ENSRROG00000040533,NA,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,115231,115536,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSRROG00000040533,NA,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,128135,128443,-,IgC1_MHC_II_alpha_HLA-DQ,ENSRROG00000035459,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,128830,129081,-,MHC_II_alpha,ENSRROG00000035459,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,184596,184913,+,MHC_II_beta,ENSRROG00000035007,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,187143,187442,+,IgC1_MHC_II_beta_HLA-DR,ENSRROG00000035007,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,215492,215728,+,MHC_II_beta,ENSRROG00000043372,NA,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,218730,219027,+,IgC1_MHC_II_beta_HLA-DR,ENSRROG00000043372,NA,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,250076,250474,+,IgC1_MHC_II_beta_HLA-DR,ENSRROG00000043372,NA,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,277571,277816,+,MHC_II_beta,ENSRROG00000044917,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,280088,280387,+,IgC1_MHC_II_beta_HLA-DR,ENSRROG00000044917,HLA-DRB1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,316781,317008,+,MHC_II_beta,KN294462.1_2:1,KN294462.1_2:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN294462.1,323990,324292,+,IgC1_MHC_II_beta_HLA-DR,KN294462.1_2:2,KN294462.1_2:2,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN294462.1,340950,341264,-,IgC1_MHC_II_alpha_HLA-DR,ENSRROG00000040020,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,KN294462.1,341748,341996,-,MHC_II_alpha,ENSRROG00000040020,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,KN300084.1,319424,319570,+,MHC_II_alpha,KN300084.1_1:1,KN300084.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,322680,322973,-,IgC1_MHC_II_beta_HLA-DP,KN300084.1_1:1,KN300084.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,333576,333956,-,MHC_II_beta,KN300084.1_1:2,KN300084.1_1:2,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,369848,369937,+,MHC_II_alpha,KN300084.1_1:3,KN300084.1_1:3,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,370362,370694,+,IgC1_MHC_II_alpha,KN300084.1_1:3,KN300084.1_1:3,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,378146,378481,-,IgC1_MHC_II_beta_HLA-DP,ENSRROG00000036288,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN300084.1,382788,383024,-,MHC_II_beta,ENSRROG00000036288,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,KN300084.1,391868,391969,+,MHC_II_alpha,ENSRROG00000037394,HLA-DPA1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,KN300084.1,393277,393531,+,MHC_II_alpha,ENSRROG00000037394,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,KN300084.1,393877,394158,+,IgC1_MHC_II_alpha,ENSRROG00000037394,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,golden.snub.nosed.monkey,NC_044550.1,146921543,146921883,+,IgC1_MHC_II_beta_HLA-DP,NC_044550.1_1:1,NC_044550.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26033115,26033363,+,MHC_II_alpha,NC_044552.1_1:1,NC_044552.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26033847,26034161,+,IgC1_MHC_II_alpha_HLA-DR,NC_044552.1_1:1,NC_044552.1_1:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26046282,26046584,-,IgC1_MHC_II_beta_HLA-DR,104674082,LOC104674082,pseudogene,aa_OG0000002,TRUE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26053405,26053557,-,MHC_II_beta,104674082,LOC104674082,pseudogene,aa_OG0000002,TRUE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26053583,26053711,-,MHC_II_beta,104674082,LOC104674082,pseudogene,aa_OG0000002,TRUE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26097184,26097483,-,IgC1_MHC_II_beta_HLA-DR,NC_044552.1_2:1,NC_044552.1_2:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26099775,26100023,-,MHC_II_beta,NC_044552.1_2:1,NC_044552.1_2:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26142420,26142719,-,IgC1_MHC_II_beta_HLA-DR,NC_044552.1_2:2,NC_044552.1_2:2,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26145049,26145294,-,MHC_II_beta,NC_044552.1_2:2,NC_044552.1_2:2,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26213451,26213708,+,MHC_II_alpha,NC_044552.1_2:3,NC_044552.1_2:3,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26214104,26214403,+,IgC1_MHC_II_alpha_HLA-DQ,NC_044552.1_2:3,NC_044552.1_2:3,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26235527,26235592,-,IgC1_MHC_II_beta_HLA-DQ_I-A,NC_044552.1_2:4,NC_044552.1_2:4,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26235595,26235663,-,IgC1_MHC_II_beta_HLA-DQ_I-A,NC_044552.1_2:4,NC_044552.1_2:4,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26238731,26239036,-,IgC1_MHC_II_beta_HLA-DQ_I-A,NC_044552.1_2:4,NC_044552.1_2:4,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26241570,26241782,-,MHC_II_beta,NC_044552.1_2:4,NC_044552.1_2:4,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26308778,26309071,+,IgC1_MHC_II_alpha_HLA-DQ,104674063,LOC104674063,pseudogene,aa_OG0000002,TRUE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26340814,26341131,-,IgC1_MHC_II_beta_HLA-DQ_I-A,NC_044552.1_3:1,NC_044552.1_3:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26341571,26341804,-,MHC_II_beta,NC_044552.1_3:1,NC_044552.1_3:1,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26638329,26638610,-,IgC1_MHC_II_alpha,NC_044552.1_3:5,NC_044552.1_3:5,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26638956,26639210,-,MHC_II_alpha,NC_044552.1_3:5,NC_044552.1_3:5,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26640518,26640619,-,MHC_II_alpha,NC_044552.1_3:5,NC_044552.1_3:5,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26649464,26649700,+,MHC_II_beta,NC_044552.1_3:6,NC_044552.1_3:6,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26654054,26654389,+,IgC1_MHC_II_beta_HLA-DP,NC_044552.1_3:7,NC_044552.1_3:7,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26661841,26662173,-,IgC1_MHC_II_alpha,NC_044552.1_3:8,NC_044552.1_3:8,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26662598,26662687,-,MHC_II_alpha,NC_044552.1_3:8,NC_044552.1_3:8,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26699992,26700372,+,MHC_II_beta,NC_044552.1_3:9,NC_044552.1_3:9,NA,NA,FALSE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26711039,26711332,+,IgC1_MHC_II_beta_HLA-DP,104657984,LOC104657984,ncRNA,aa_OG0000041,TRUE
MHCII,golden.snub.nosed.monkey,NC_044552.1,26714443,26714589,-,MHC_II_alpha,104657984,LOC104657984,NA,NA,FALSE
MHCII,orangutan,4,44595280,44595629,+,IgC1_MHC_II_beta_HLA-DP,4_1:1,4_1:1,NA,NA,FALSE
MHCII,orangutan,4,174640606,174640764,-,IgC1_MHC_II_alpha_HLA-DQ,4_1:2,4_1:2,NA,NA,FALSE
MHCII,orangutan,6,32977255,32977575,-,IgC1_MHC_II_beta_HLA-DR,6_1:1,6_1:1,NA,NA,FALSE
MHCII,orangutan,6,33018712,33019044,-,IgC1_MHC_II_beta_HLA-DR,ENSPPYG00000016490,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6,33021436,33021681,-,MHC_II_beta,ENSPPYG00000016490,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6,33053104,33053388,-,IgC1_MHC_II_beta_HLA-DR,6_2:1,6_2:1,NA,NA,FALSE
MHCII,orangutan,6,33100065,33100316,+,MHC_II_alpha,ENSPPYG00000016491,NA,protein_coding,aa_OG0000240,TRUE
MHCII,orangutan,6,33100624,33100967,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPPYG00000016491,NA,protein_coding,aa_OG0000240,TRUE
MHCII,orangutan,6,33110965,33111030,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_3:1,6_3:1,NA,NA,FALSE
MHCII,orangutan,6,33111033,33111110,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_3:1,6_3:1,NA,NA,FALSE
MHCII,orangutan,6,33114245,33114550,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPYG00000016492,NA,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6,33117058,33117288,-,MHC_II_beta,ENSPPYG00000016492,NA,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6,33128779,33128844,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_4:1,6_4:1,NA,NA,FALSE
MHCII,orangutan,6,33128847,33128921,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_4:1,6_4:1,NA,NA,FALSE
MHCII,orangutan,6,33132760,33132957,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_4:2,6_4:2,NA,NA,FALSE
MHCII,orangutan,6,33136090,33136302,-,MHC_II_beta,6_4:3,6_4:3,NA,NA,FALSE
MHCII,orangutan,6_random,25495,25794,-,IgC1_MHC_II_beta_HLA-DR,ENSPPYG00000017216,NA,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6_random,26270,26338,-,IgC1_MHC_II_beta_HLA-DR,ENSPPYG00000017216,NA,NA,NA,FALSE
MHCII,orangutan,6_random,27964,28299,-,MHC_II_beta,ENSPPYG00000017216,NA,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6_random,35798,36049,-,MHC_II_beta,6_random_2:1,6_random_2:1,NA,NA,FALSE
MHCII,orangutan,6_random,60655,60891,+,MHC_II_beta,ENSPPYG00000029571,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6_random,63292,63585,+,IgC1_MHC_II_beta_HLA-DP,ENSPPYG00000029571,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,orangutan,6_random,70954,71245,-,IgC1_MHC_II_alpha,6_random_3:1,6_random_3:1,NA,NA,FALSE
MHCII,orangutan,6_random,71603,71809,-,MHC_II_alpha,6_random_3:1,6_random_3:1,NA,NA,FALSE
MHCII,orangutan,NW_019939309.1,25244,25564,-,IgC1_MHC_II_beta_HLA-DR,NW_019939309.1_1:1,NW_019939309.1_1:1,NA,NA,FALSE
MHCII,orangutan,NW_019939309.1,63830,64162,-,IgC1_MHC_II_beta_HLA-DR,NW_019939309.1_1:2,NW_019939309.1_1:2,NA,NA,FALSE
MHCII,orangutan,NW_019939309.1,66434,66679,-,MHC_II_beta,NW_019939309.1_1:2,NW_019939309.1_1:2,NA,NA,FALSE
MHCII,orangutan,NW_019939309.1,95966,96250,-,IgC1_MHC_II_beta_HLA-DR,100456830,LOC100456830,mRNA,aa_OG0000041,TRUE
MHCII,gorilla,4,43219407,43219756,+,IgC1_MHC_II_beta_HLA-DP,4_1:1,4_1:1,NA,NA,FALSE
MHCII,gorilla,6,33037746,33037994,+,MHC_II_alpha,ENSGGOG00000009861,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33038479,33038793,+,IgC1_MHC_II_alpha_HLA-DR,ENSGGOG00000009861,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33055185,33055406,-,MHC_II_beta,6_1:1,6_1:1,NA,NA,FALSE
MHCII,gorilla,6,33127065,33127364,-,IgC1_MHC_II_beta_HLA-DR,ENSGGOG00000037929,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33129643,33129888,-,MHC_II_beta,ENSGGOG00000037929,HLA-DRB5,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33132218,33132436,-,MHC_II_beta,ENSGGOG00000037929,HLA-DRB5,NA,NA,FALSE
MHCII,gorilla,6,33134431,33134649,-,MHC_II_beta,ENSGGOG00000037929,HLA-DRB5,NA,NA,FALSE
MHCII,gorilla,6,33188548,33188847,-,IgC1_MHC_II_beta_HLA-DR,6_2:2,6_2:2,NA,NA,FALSE
MHCII,gorilla,6,33211409,33211477,+,IgC1_MHC_II_beta_HLA-DR,6_2:3,6_2:3,NA,NA,FALSE
MHCII,gorilla,6,33229731,33230030,-,IgC1_MHC_II_beta_HLA-DR,ENSGGOG00000000700,NA,NA,NA,FALSE
MHCII,gorilla,6,33230512,33230580,-,IgC1_MHC_II_beta_HLA-DR,ENSGGOG00000000700,NA,NA,NA,FALSE
MHCII,gorilla,6,33232286,33232585,-,IgC1_MHC_II_beta_HLA-DR,ENSGGOG00000000700,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33234808,33235059,-,MHC_II_beta,ENSGGOG00000000700,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33302800,33303057,+,MHC_II_alpha,ENSGGOG00000013538,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33303441,33303752,+,IgC1_MHC_II_alpha_HLA-DQ,ENSGGOG00000013538,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33320741,33320806,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000004252,HLA-DQB1,NA,NA,FALSE
MHCII,gorilla,6,33320809,33320886,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000004252,HLA-DQB1,NA,NA,FALSE
MHCII,gorilla,6,33323906,33324211,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000004252,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33326767,33326997,-,MHC_II_beta,ENSGGOG00000004252,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33393546,33393816,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_4:1,6_4:1,NA,NA,FALSE
MHCII,gorilla,6,33407277,33407528,+,MHC_II_alpha,ENSGGOG00000037744,NA,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33408121,33408288,+,IgC1_MHC_II_alpha_HLA-DQ,ENSGGOG00000037744,NA,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33417215,33417283,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000014413,HLA-DQB2,NA,NA,FALSE
MHCII,gorilla,6,33417286,33417351,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000014413,HLA-DQB2,NA,NA,FALSE
MHCII,gorilla,6,33421045,33421347,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000014413,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33423888,33424112,-,MHC_II_beta,ENSGGOG00000014413,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33476559,33476861,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSGGOG00000043194,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gorilla,6,33477316,33477549,-,MHC_II_beta,ENSGGOG00000043194,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gorilla,6,33729017,33729298,-,IgC1_MHC_II_alpha,ENSGGOG00000013625,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33729624,33729893,-,MHC_II_alpha,ENSGGOG00000013625,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,gorilla,6,33740629,33740907,+,MHC_II_beta,ENSGGOG00000013630,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33744870,33745163,+,IgC1_MHC_II_beta_HLA-DP,ENSGGOG00000013630,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gorilla,6,33752054,33752320,-,IgC1_MHC_II_alpha,6_6:1,6_6:1,NA,NA,FALSE
MHCII,gorilla,6,33752719,33752946,-,MHC_II_alpha,6_6:1,6_6:1,NA,NA,FALSE
MHCII,gorilla,6,33777116,33777361,+,MHC_II_beta,6_6:2,6_6:2,NA,NA,FALSE
MHCII,gorilla,6,33787667,33787930,+,IgC1_MHC_II_beta_HLA-DP,6_6:3,6_6:3,NA,NA,FALSE
MHCII,gorilla,6,33791035,33791181,-,MHC_II_alpha,6_6:3,6_6:3,NA,NA,FALSE
MHCII,bonobo,2A,29165617,29165769,-,IgC1_MHC_II_alpha_HLA-DQ,2A_1:1,2A_1:1,NA,NA,FALSE
MHCII,bonobo,4,43554466,43554815,+,IgC1_MHC_II_beta_HLA-DP,4_1:1,4_1:1,NA,NA,FALSE
MHCII,bonobo,6,32984824,32985072,+,MHC_II_alpha,ENSPPAG00000041818,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,32985558,32985872,+,IgC1_MHC_II_alpha_HLA-DR,ENSPPAG00000041818,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33001330,33001551,-,MHC_II_beta,100994351,LOC100994351,pseudogene,aa_OG0000002,TRUE
MHCII,bonobo,6,33040588,33040887,-,IgC1_MHC_II_beta_HLA-DR,ENSPPAG00000029790,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33041369,33041437,-,IgC1_MHC_II_beta_HLA-DR,ENSPPAG00000029790,NA,NA,NA,FALSE
MHCII,bonobo,6,33043158,33043385,-,MHC_II_beta,ENSPPAG00000029790,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33103629,33103932,-,IgC1_MHC_II_beta_HLA-DR,100994014,LOC100994014,pseudogene,aa_OG0019608,TRUE
MHCII,bonobo,6,33106883,33107116,-,MHC_II_beta,ENSPPAG00000036652;100994014,NA;LOC100994014,protein_coding;pseudogene,aa_OG0000041;aa_OG0019608,TRUE
MHCII,bonobo,6,33133964,33134248,-,IgC1_MHC_II_beta_HLA-DR,ENSPPAG00000039594,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33135506,33135727,-,MHC_II_beta,ENSPPAG00000039594,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33334836,33335093,+,MHC_II_alpha,ENSPPAG00000019881,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33335489,33335686,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPPAG00000019881,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33352925,33352990,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041275,HLA-DQB1,NA,NA,FALSE
MHCII,bonobo,6,33352993,33353070,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041275,HLA-DQB1,NA,NA,FALSE
MHCII,bonobo,6,33356098,33356403,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041275,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33358419,33358631,-,MHC_II_beta,ENSPPAG00000041275,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33420069,33420341,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_3:1,6_3:1,NA,NA,FALSE
MHCII,bonobo,6,33433601,33433852,+,MHC_II_alpha,ENSPPAG00000038014,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33434248,33434547,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPPAG00000038014,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33443470,33443538,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041341,HLA-DQB2,NA,NA,FALSE
MHCII,bonobo,6,33443541,33443597,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041341,HLA-DQB2,NA,NA,FALSE
MHCII,bonobo,6,33447285,33447587,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000041341,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33450128,33450352,-,MHC_II_beta,ENSPPAG00000041341,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33498748,33499050,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000027428,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,bonobo,6,33499504,33499737,-,MHC_II_beta,ENSPPAG00000027428,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,bonobo,6,33756663,33756944,-,IgC1_MHC_II_alpha,ENSPPAG00000031863,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33757270,33757539,-,MHC_II_alpha,ENSPPAG00000031863,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,6,33768314,33768562,+,MHC_II_beta,ENSPPAG00000041449,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33772519,33772812,+,IgC1_MHC_II_beta_HLA-DP,ENSPPAG00000041449,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,6,33779680,33779961,-,IgC1_MHC_II_alpha,100967376,LOC100967376,mRNA,aa_OG0023115,TRUE
MHCII,bonobo,6,33780360,33780596,-,MHC_II_alpha,100967376,LOC100967376,mRNA,aa_OG0023115,TRUE
MHCII,bonobo,6,33804456,33804701,+,MHC_II_beta,100994561,LOC100994561,pseudogene,aa_OG0020696,TRUE
MHCII,bonobo,6,33814989,33815266,+,IgC1_MHC_II_beta_HLA-DP,100994561,LOC100994561,pseudogene,aa_OG0020696,TRUE
MHCII,bonobo,6,33818378,33818524,-,MHC_II_alpha,100994561,LOC100994561,NA,NA,FALSE
MHCII,bonobo,19,13049173,13049301,-,IgC1_MHC_II_alpha_HLA-DQ,19_1:1,19_1:1,NA,NA,FALSE
MHCII,bonobo,KQ412089.1,14592,14840,+,MHC_II_alpha,ENSPPAG00000028055,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,KQ412089.1,15235,15534,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPPAG00000028055,NA,protein_coding,aa_OG0000240,TRUE
MHCII,bonobo,KQ412089.1,27934,27999,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000038080,NA,NA,NA,FALSE
MHCII,bonobo,KQ412089.1,28002,28079,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000038080,NA,NA,NA,FALSE
MHCII,bonobo,KQ412089.1,31498,31800,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPPAG00000038080,NA,protein_coding,aa_OG0000041,TRUE
MHCII,bonobo,KQ412089.1,34347,34559,-,MHC_II_beta,ENSPPAG00000038080,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,2A,29680785,29680937,-,IgC1_MHC_II_alpha_HLA-DQ,VGNC:VGNC:10681,ALK,protein_coding,aa_OG0000002,TRUE
MHCII,chimpanzee,4,43918228,43918577,+,IgC1_MHC_II_beta_HLA-DP,4_1:1,4_1:1,NA,NA,FALSE
MHCII,chimpanzee,6,32688527,32688775,+,MHC_II_alpha,ENSPTRG00000018016,PATR-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,32689261,32689575,+,IgC1_MHC_II_alpha_HLA-DR,ENSPTRG00000018016,PATR-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,32768928,32769227,-,IgC1_MHC_II_beta_HLA-DR,ENSPTRG00000023735;VGNC:VGNC:12743,PATR-DRB5;VPS52,protein_coding,aa_OG0000041;aa_OG0000001,TRUE
MHCII,chimpanzee,6,32771501,32771746,-,MHC_II_beta,ENSPTRG00000023735;VGNC:VGNC:12743,PATR-DRB5;VPS52,protein_coding,aa_OG0000041;aa_OG0000001,TRUE
MHCII,chimpanzee,6,32804530,32804862,-,IgC1_MHC_II_beta_HLA-DR,ENSPTRG00000051243,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,32808143,32808385,-,MHC_II_beta,ENSPTRG00000051243;VGNC:VGNC:11203,NA;RGL2,protein_coding,aa_OG0000041;aa_OG0008446,TRUE
MHCII,chimpanzee,6,32835359,32835658,-,IgC1_MHC_II_beta_HLA-DR,ENSPTRG00000051243;VGNC:VGNC:12777,NA;DAXX,protein_coding,aa_OG0000041;aa_OG0007929,TRUE
MHCII,chimpanzee,6,32836140,32836208,-,IgC1_MHC_II_beta_HLA-DR,VGNC:VGNC:12777,DAXX,protein_coding,aa_OG0007929,TRUE
MHCII,chimpanzee,6,32837998,32838216,-,MHC_II_beta,ENSPTRG00000051243,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,32897749,32898032,-,IgC1_MHC_II_beta_HLA-DR,6_1:1,6_1:1,NA,NA,FALSE
MHCII,chimpanzee,6,32918143,32918442,-,IgC1_MHC_II_beta_HLA-DR,ENSPTRG00000018001,PATR-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,32918937,32919005,-,IgC1_MHC_II_beta_HLA-DR,ENSPTRG00000018001,PATR-DQB1,NA,NA,FALSE
MHCII,chimpanzee,6,32920748,32920996,-,MHC_II_beta,ENSPTRG00000018001,PATR-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,32976243,32976494,+,MHC_II_alpha,ENSPTRG00000018017,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,32976889,32977188,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPTRG00000018017,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,32989049,32989171,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000018018,NA,NA,NA,FALSE
MHCII,chimpanzee,6,32992190,32992495,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000018018,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,32995042,32995254,-,MHC_II_beta,ENSPTRG00000018018,NA,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,33057060,33057332,-,IgC1_MHC_II_beta_HLA-DQ_I-A,6_4:1,6_4:1,NA,NA,FALSE
MHCII,chimpanzee,6,33070834,33071085,+,MHC_II_alpha,ENSPTRG00000034186,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,33071481,33071780,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPTRG00000034186,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,33080734,33080802,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000023404;VGNC:VGNC:8158,HLA-DQB2;BAK1,NA,NA,FALSE
MHCII,chimpanzee,6,33080805,33080861,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000023404;VGNC:VGNC:8158,HLA-DQB2;BAK1,NA,NA,FALSE
MHCII,chimpanzee,6,33084551,33084853,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000023404;VGNC:VGNC:8158,HLA-DQB2;BAK1,protein_coding,aa_OG0000041;aa_OG0006253,TRUE
MHCII,chimpanzee,6,33087395,33087619,-,MHC_II_beta,ENSPTRG00000023404;VGNC:VGNC:8158,HLA-DQB2;BAK1,protein_coding,aa_OG0000041;aa_OG0006253,TRUE
MHCII,chimpanzee,6,33136037,33136339,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTRG00000018020,PATR-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,chimpanzee,6,33136794,33137027,-,MHC_II_beta,ENSPTRG00000018020,PATR-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,chimpanzee,6,33394888,33395169,-,IgC1_MHC_II_alpha,ENSPTRG00000018029,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,33395504,33395764,-,MHC_II_alpha,ENSPTRG00000018029,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,chimpanzee,6,33406538,33406813,+,MHC_II_beta,ENSPTRG00000018030,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,33410746,33411039,+,IgC1_MHC_II_beta_HLA-DP,ENSPTRG00000018030,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,chimpanzee,6,33417920,33418198,-,IgC1_MHC_II_alpha,6_6:1,6_6:1,NA,NA,FALSE
MHCII,chimpanzee,6,33418600,33418866,-,MHC_II_alpha,6_6:1,6_6:1,NA,NA,FALSE
MHCII,chimpanzee,6,33442564,33442809,+,MHC_II_beta,6_6:2,6_6:2,NA,NA,FALSE
MHCII,chimpanzee,6,33453101,33453378,+,IgC1_MHC_II_beta_HLA-DP,6_6:3,6_6:3,NA,NA,FALSE
MHCII,chimpanzee,6,33456490,33456636,-,MHC_II_alpha,6_6:3,6_6:3,NA,NA,FALSE
MHCII,chimpanzee,19,13474204,13474332,-,IgC1_MHC_II_alpha_HLA-DQ,VGNC:VGNC:2236,SYCE2,protein_coding,aa_OG0008604,TRUE
MHCII,gibbon,1a,77299334,77299582,+,MHC_II_alpha,ENSNLEG00000006686,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77300068,77300382,+,IgC1_MHC_II_alpha_HLA-DR,ENSNLEG00000006686,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77316881,77317162,-,MHC_II_beta,1a_1:1,1a_1:1,NA,NA,FALSE
MHCII,gibbon,1a,77386220,77386522,-,IgC1_MHC_II_beta_HLA-DR,ENSNLEG00000032832,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77387009,77387077,-,IgC1_MHC_II_beta_HLA-DR,ENSNLEG00000032832,NA,NA,NA,FALSE
MHCII,gibbon,1a,77455011,77455268,+,MHC_II_alpha,ENSNLEG00000032515,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77455649,77455948,+,IgC1_MHC_II_alpha_HLA-DQ,ENSNLEG00000032515,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77470429,77470581,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNLEG00000006693,HLA-DQB1,NA,NA,FALSE
MHCII,gibbon,1a,77473637,77473924,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNLEG00000006693,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77476443,77476673,-,MHC_II_beta,ENSNLEG00000006693,HLA-DQB1,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77549170,77549421,+,MHC_II_alpha,ENSNLEG00000027015,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77549817,77550116,+,IgC1_MHC_II_alpha_HLA-DQ,ENSNLEG00000027015,HLA-DQA2,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77559071,77559203,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNLEG00000006713,HLA-DQB2,NA,NA,FALSE
MHCII,gibbon,1a,77562882,77563277,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNLEG00000006713,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77565716,77565940,-,MHC_II_beta,ENSNLEG00000006713,HLA-DQB2,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77624621,77624923,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSNLEG00000027543,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gibbon,1a,77625378,77625611,-,MHC_II_beta,ENSNLEG00000027543,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gibbon,1a,77888950,77889240,-,IgC1_MHC_II_alpha,ENSNLEG00000034417,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77889566,77889835,-,MHC_II_alpha,ENSNLEG00000034417,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,gibbon,1a,77906141,77906389,+,MHC_II_beta,ENSNLEG00000006801,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77910395,77910688,+,IgC1_MHC_II_beta_HLA-DP,ENSNLEG00000006801,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,1a,77917593,77917874,-,IgC1_MHC_II_alpha,1a_5:1,1a_5:1,NA,NA,FALSE
MHCII,gibbon,1a,77918273,77918506,-,MHC_II_alpha,1a_5:1,1a_5:1,NA,NA,FALSE
MHCII,gibbon,1a,77944291,77944536,+,MHC_II_beta,1a_5:2,1a_5:2,NA,NA,FALSE
MHCII,gibbon,1a,77954706,77954989,+,IgC1_MHC_II_beta_HLA-DP,1a_5:3,1a_5:3,NA,NA,FALSE
MHCII,gibbon,1a,77958074,77958220,-,MHC_II_alpha,1a_5:3,1a_5:3,NA,NA,FALSE
MHCII,gibbon,19,61247880,61248032,+,IgC1_MHC_II_alpha_HLA-DQ,19_1:1,19_1:1,NA,NA,FALSE
MHCII,gibbon,20,44202724,44203073,-,IgC1_MHC_II_beta_HLA-DP,20_1:1,20_1:1,NA,NA,FALSE
MHCII,gibbon,GL398385.1,11980,12279,-,IgC1_MHC_II_beta_HLA-DR,ENSNLEG00000000928,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,GL398385.1,12772,12840,-,IgC1_MHC_II_beta_HLA-DR,ENSNLEG00000000928,NA,NA,NA,FALSE
MHCII,gibbon,GL398385.1,15508,15747,-,MHC_II_beta,ENSNLEG00000000928,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gibbon,GL400067.1,5351,5650,-,IgC1_MHC_II_beta_HLA-DR,GL400067.1_1:1,GL400067.1_1:1,NA,NA,FALSE
MHCII,gibbon,GL400471.1,2476,2775,+,IgC1_MHC_II_beta_HLA-DR,GL400471.1_1:1,GL400471.1_1:1,NA,NA,FALSE
MHCII,tarsier,ABRT02107610.1,398,691,+,IgC1_MHC_II_alpha,103264723,LOC103264723,mRNA,aa_OG0000240,TRUE
MHCII,tarsier,ABRT02350582.1,10428,10709,-,IgC1_MHC_II_alpha_HLA-DQ,ENSTSYG00000002189,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,ABRT02350582.1,11095,11346,-,MHC_II_alpha,ENSTSYG00000002189,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,KE926877.1,410538,410807,-,IgC1_MHC_II_beta_HLA-DP,103262736,LOC103262736,pseudogene,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,411732,411848,-,MHC_II_beta,103262736,LOC103262736,pseudogene,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,421674,421982,-,IgC1_MHC_II_beta_HLA-DP,103262747,LOC103262747,misc_RNA,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,422439,422671,-,MHC_II_beta,103262747,LOC103262747,misc_RNA,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,432694,432954,+,MHC_II_alpha,103262686,LOC103262686,misc_RNA,aa_OG0000240,TRUE
MHCII,tarsier,KE926877.1,433252,433566,+,IgC1_MHC_II_alpha,103262686,LOC103262686,misc_RNA,aa_OG0000240,TRUE
MHCII,tarsier,KE926877.1,449562,449927,-,IgC1_MHC_II_beta_HLA-DP,ENSTSYG00000009782,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,453204,453416,-,MHC_II_beta,ENSTSYG00000009782,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE926877.1,464958,465254,+,MHC_II_alpha,ENSTSYG00000013384,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,KE926877.1,465555,465848,+,IgC1_MHC_II_alpha,ENSTSYG00000013384,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,KE927449.1,1833,1898,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTSYG00000037175;103266905,NA;LOC103266905,NA,NA,FALSE
MHCII,tarsier,KE927449.1,1901,1978,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTSYG00000037175;103266905,NA;LOC103266905,NA,NA,FALSE
MHCII,tarsier,KE927449.1,4977,5279,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTSYG00000037175;103266905,NA;LOC103266905,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,tarsier,KE927449.1,7756,7863,-,MHC_II_beta,103266905,LOC103266905,mRNA,aa_OG0000041,TRUE
MHCII,tarsier,KE938703.1,152425,152679,+,MHC_II_beta,KE938703.1_1:1,KE938703.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE943430.1,32541,32699,-,IgC1_MHC_II_beta_HLA-DR,KE943430.1_1:1,KE943430.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE943430.1,102791,103204,-,IgC1_MHC_II_beta_HLA-DR,ENSTSYG00000002964,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE943430.1,112452,112715,-,MHC_II_beta,ENSTSYG00000002964,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE943868.1,29357,29485,+,MHC_II_beta,ENSTSYG00000009393,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE943868.1,29491,29571,+,MHC_II_beta,ENSTSYG00000009393,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE943868.1,32500,32784,+,IgC1_MHC_II_beta_HLA-DR,ENSTSYG00000009393,NA,protein_coding,aa_OG0000041,TRUE
MHCII,tarsier,KE944977.1,188174,188448,-,IgC1_MHC_II_alpha_HLA-DQ,KE944977.1_1:1,KE944977.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE944977.1,188481,188567,-,MHC_II_alpha,KE944977.1_1:1,KE944977.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE944977.1,188587,188700,-,MHC_II_alpha,KE944977.1_1:1,KE944977.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE946823.1,150052,150375,+,MHC_II_beta,ENSTSYG00000007697,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,tarsier,KE946823.1,150748,151047,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTSYG00000007697,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,tarsier,KE946823.1,169426,169677,+,MHC_II_beta,103271937,LOC103271937,NA,NA,FALSE
MHCII,tarsier,KE946823.1,172286,172444,+,IgC1_MHC_II_beta_HLA-DQ_I-A,103271937,LOC103271937,ncRNA,NA,TRUE
MHCII,tarsier,KE946823.1,172452,172598,+,IgC1_MHC_II_beta_HLA-DQ_I-A,103271937,LOC103271937,NA,NA,FALSE
MHCII,tarsier,KE946823.1,186070,186300,-,IgC1_MHC_II_alpha_HLA-DQ,110596659,LOC110596659,misc_RNA,aa_OG0000240,TRUE
MHCII,tarsier,KE946823.1,186858,187087,-,MHC_II_alpha,110596659,LOC110596659,misc_RNA,aa_OG0000240,TRUE
MHCII,tarsier,KE946997.1,87517,87759,+,MHC_II_alpha,ENSTSYG00000006841,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,KE946997.1,88286,88576,+,IgC1_MHC_II_alpha,ENSTSYG00000006841,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,tarsier,KE946997.1,125347,125610,-,IgC1_MHC_II_beta_HLA-DR,KE946997.1_1:1,KE946997.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE946997.1,128451,128660,-,MHC_II_beta,KE946997.1_1:1,KE946997.1_1:1,NA,NA,FALSE
MHCII,tarsier,KE946997.1,157475,157759,-,IgC1_MHC_II_beta_HLA-DR,103272285,LOC103272285,pseudogene,aa_OG0000041,TRUE
MHCII,tarsier,KE946997.1,159269,159574,-,MHC_II_beta,103272285,LOC103272285,pseudogene,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_3847,49400,49726,+,MHC_II_beta,ENSOPRG00000000830,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_3847,52786,53070,+,IgC1_MHC_II_beta_HLA-DP,ENSOPRG00000000830,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_3847,62878,63174,-,IgC1_MHC_II_alpha,ENSOPRG00000000840,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_3847,63480,63737,-,MHC_II_alpha,ENSOPRG00000000840,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_3847,64979,65185,+,MHC_II_beta,ENSOPRG00000000840,NA,NA,NA,FALSE
MHCII,pika,GeneScaffold_3847,65693,65986,+,IgC1_MHC_II_beta_HLA-DP,ENSOPRG00000000840,NA,NA,NA,FALSE
MHCII,pika,GeneScaffold_3848,123344,123640,-,IgC1_MHC_II_alpha,ENSOPRG00000007464,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_3848,123869,124201,-,MHC_II_alpha,ENSOPRG00000007464,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_5123,26588,27025,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOPRG00000001634,NA,protein_coding,aa_OG0012340,TRUE
MHCII,pika,GeneScaffold_5123,27211,27591,-,MHC_II_beta,ENSOPRG00000001634,NA,protein_coding,aa_OG0012340,TRUE
MHCII,pika,GeneScaffold_5124,93251,93541,+,MHC_II_alpha,ENSOPRG00000006210,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_5124,93916,94224,+,IgC1_MHC_II_alpha,ENSOPRG00000006210,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,GeneScaffold_5124,98353,98637,-,IgC1_MHC_II_beta_HLA-DR,ENSOPRG00000006210,HLA-DRA,NA,NA,FALSE
MHCII,pika,GeneScaffold_5124,113414,113515,-,IgC1_MHC_II_beta_HLA-DR,ENSOPRG00000006220,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_5124,116595,116837,-,MHC_II_beta,ENSOPRG00000006220,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_5124,138204,138566,-,IgC1_MHC_II_beta_HLA-DR,GeneScaffold_5124_2:1,GeneScaffold_5124_2:1,NA,NA,FALSE
MHCII,pika,GeneScaffold_5124,140322,140531,-,MHC_II_beta,GeneScaffold_5124_2:1,GeneScaffold_5124_2:1,NA,NA,FALSE
MHCII,pika,GeneScaffold_5124,153370,153654,-,IgC1_MHC_II_beta_HLA-DR,ENSOPRG00000006238,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_5124,155345,155581,-,MHC_II_beta,ENSOPRG00000006238,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,GeneScaffold_5124,197525,197800,-,MHC_II_beta,GeneScaffold_5124_3:1,GeneScaffold_5124_3:1,NA,NA,FALSE
MHCII,pika,NW_004535445.1,46837128,46837355,+,IgC1_MHC_II_beta_HLA-DR,NW_004535445.1_1:1,NW_004535445.1_1:1,NA,NA,FALSE
MHCII,pika,NW_004535477.1,80438,80728,+,MHC_II_alpha,101532154,LOC101532154,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,81103,81411,+,IgC1_MHC_II_alpha,101532154,LOC101532154,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,85586,85870,-,IgC1_MHC_II_beta_HLA-DR,101533271,LOC101533271,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,100054,100338,-,IgC1_MHC_II_beta_HLA-DR,101533271,LOC101533271,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,102541,102783,-,MHC_II_beta,101533271,LOC101533271,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,118461,118745,-,IgC1_MHC_II_beta_HLA-DR,101533514,LOC101533514,pseudogene,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,120555,120764,-,MHC_II_beta,101533514,LOC101533514,pseudogene,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,133611,133895,-,IgC1_MHC_II_beta_HLA-DR,101533755,LOC101533755,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,135690,135926,-,MHC_II_beta,101533755,LOC101533755,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,146305,146592,-,IgC1_MHC_II_beta_HLA-DR,101534001,LOC101534001,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,148532,148807,-,MHC_II_beta,101534001,LOC101534001,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,166111,166473,-,IgC1_MHC_II_beta_HLA-DR,101534241,LOC101534241,pseudogene,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,168543,168710,-,MHC_II_beta,101534241,LOC101534241,pseudogene,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,182184,182486,-,IgC1_MHC_II_beta_HLA-DR,NW_004535477.1_1:1,NW_004535477.1_1:1,NA,NA,FALSE
MHCII,pika,NW_004535477.1,185445,185672,-,MHC_II_beta,NW_004535477.1_1:1,NW_004535477.1_1:1,NA,NA,FALSE
MHCII,pika,NW_004535477.1,207652,207954,-,IgC1_MHC_II_beta_HLA-DR,101534727,LOC101534727,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,211553,211783,-,MHC_II_beta,101534727,LOC101534727,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,292026,292277,+,MHC_II_alpha,101534971,LOC101534971,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,292666,292965,+,IgC1_MHC_II_alpha_HLA-DQ,101534971,LOC101534971,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,314248,314553,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101532394,LOC101532394,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,319385,319594,-,MHC_II_beta,101532394,LOC101532394,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,358471,358770,-,IgC1_MHC_II_beta_HLA-DQ_I-A,101535219,LOC101535219,mRNA,aa_OG0012340,TRUE
MHCII,pika,NW_004535477.1,359096,359476,-,MHC_II_beta,101535219,LOC101535219,mRNA,aa_OG0012340,TRUE
MHCII,pika,NW_004535477.1,548934,549242,-,IgC1_MHC_II_alpha,101533349,LOC101533349,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,549469,549801,-,MHC_II_alpha,101533349,LOC101533349,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,557696,557998,+,MHC_II_beta,101516124,LOC101516124,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,561033,561326,+,IgC1_MHC_II_beta_HLA-DP,101516124,LOC101516124,mRNA,aa_OG0000041,TRUE
MHCII,pika,NW_004535477.1,567543,567839,-,IgC1_MHC_II_alpha,101516365,LOC101516365,mRNA,aa_OG0000240,TRUE
MHCII,pika,NW_004535477.1,568097,568402,-,MHC_II_alpha,101516365,LOC101516365,mRNA,aa_OG0000240,TRUE
MHCII,pika,scaffold_13825,7349,7576,+,MHC_II_beta,ENSOPRG00000004548,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,scaffold_13825,11196,11498,+,IgC1_MHC_II_beta_HLA-DR,ENSOPRG00000004548,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,scaffold_13825,45282,45501,+,MHC_II_beta,scaffold_13825_1:1,scaffold_13825_1:1,NA,NA,FALSE
MHCII,pika,scaffold_15035,42763,42972,+,MHC_II_beta,scaffold_15035_1:1,scaffold_15035_1:1,NA,NA,FALSE
MHCII,pika,scaffold_1579,142633,142860,-,IgC1_MHC_II_beta_HLA-DR,scaffold_1579_1:1,scaffold_1579_1:1,NA,NA,FALSE
MHCII,pika,scaffold_23020,41487,41762,-,MHC_II_beta,scaffold_23020_1:1,scaffold_23020_1:1,NA,NA,FALSE
MHCII,pika,scaffold_27862,4284,4583,-,IgC1_MHC_II_alpha_HLA-DQ,ENSOPRG00000001036,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,scaffold_27862,4943,5194,-,MHC_II_alpha,ENSOPRG00000001036,NA,protein_coding,aa_OG0000240,TRUE
MHCII,pika,scaffold_33239,5873,6178,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSOPRG00000001089,NA,protein_coding,aa_OG0000041,TRUE
MHCII,pika,scaffold_3647,93251,93541,+,MHC_II_alpha,scaffold_3647_1:1,scaffold_3647_1:1,NA,NA,FALSE
MHCII,pika,scaffold_3647,93916,94224,+,IgC1_MHC_II_alpha,scaffold_3647_1:1,scaffold_3647_1:1,NA,NA,FALSE
MHCII,pika,scaffold_3647,98353,98637,-,IgC1_MHC_II_beta_HLA-DR,scaffold_3647_1:1,scaffold_3647_1:1,NA,NA,FALSE
MHCII,pika,scaffold_3647,113414,113515,-,IgC1_MHC_II_beta_HLA-DR,scaffold_3647_1:2,scaffold_3647_1:2,NA,NA,FALSE
MHCII,pika,scaffold_3647,133020,133382,-,IgC1_MHC_II_beta_HLA-DR,scaffold_3647_1:3,scaffold_3647_1:3,NA,NA,FALSE
MHCII,pika,scaffold_3647,135097,135347,-,MHC_II_beta,scaffold_3647_1:3,scaffold_3647_1:3,NA,NA,FALSE
MHCII,pika,scaffold_3647,148186,148470,-,IgC1_MHC_II_beta_HLA-DR,scaffold_3647_1:4,scaffold_3647_1:4,NA,NA,FALSE
MHCII,pika,scaffold_3647,150161,150397,-,MHC_II_beta,scaffold_3647_1:4,scaffold_3647_1:4,NA,NA,FALSE
MHCII,pika,scaffold_3921,123039,123335,-,IgC1_MHC_II_alpha,scaffold_3921_1:4,scaffold_3921_1:4,NA,NA,FALSE
MHCII,pika,scaffold_3921,123564,123896,-,MHC_II_alpha,scaffold_3921_1:4,scaffold_3921_1:4,NA,NA,FALSE
MHCII,pika,scaffold_4825,10088,10368,-,IgC1_MHC_II_beta_HLA-DR,scaffold_4825_1:1,scaffold_4825_1:1,NA,NA,FALSE
MHCII,pika,scaffold_4825,12534,12653,-,MHC_II_beta,scaffold_4825_1:1,scaffold_4825_1:1,NA,NA,FALSE
MHCII,pika,scaffold_713,49400,49726,+,MHC_II_beta,scaffold_713_1:1,scaffold_713_1:1,NA,NA,FALSE
MHCII,pika,scaffold_713,52786,53070,+,IgC1_MHC_II_beta_HLA-DP,scaffold_713_1:1,scaffold_713_1:1,NA,NA,FALSE
MHCII,pika,scaffold_713,62878,63174,-,IgC1_MHC_II_alpha,scaffold_713_1:2,scaffold_713_1:2,NA,NA,FALSE
MHCII,pika,scaffold_713,63480,63737,-,MHC_II_alpha,scaffold_713_1:2,scaffold_713_1:2,NA,NA,FALSE
MHCII,pika,scaffold_713,64979,65185,+,MHC_II_beta,scaffold_713_1:2,scaffold_713_1:2,NA,NA,FALSE
MHCII,pika,scaffold_713,65693,65986,+,IgC1_MHC_II_beta_HLA-DP,scaffold_713_1:2,scaffold_713_1:2,NA,NA,FALSE
MHCII,pika,scaffold_7735,26588,27025,-,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_7735_1:1,scaffold_7735_1:1,NA,NA,FALSE
MHCII,pika,scaffold_7735,27211,27591,-,MHC_II_beta,scaffold_7735_1:1,scaffold_7735_1:1,NA,NA,FALSE
MHCII,pika,scaffold_85285,4113,4355,+,MHC_II_beta,scaffold_85285_1:1,scaffold_85285_1:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01000328.1,30291,30482,+,MHC_II_beta,109695161,LOC109695161,pseudogene,aa_OG0000002,TRUE
MHCII,american.beaver,MTKA01000328.1,36638,36913,+,IgC1_MHC_II_beta_HLA-DQ_I-A,109695161,LOC109695161,pseudogene,aa_OG0000002,TRUE
MHCII,american.beaver,MTKA01000328.1,58721,59005,-,IgC1_MHC_II_alpha_HLA-DQ,MTKA01000328.1_1:1,MTKA01000328.1_1:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01000328.1,59518,59708,-,MHC_II_alpha,MTKA01000328.1_1:1,MTKA01000328.1_1:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01000328.1,113940,114167,+,MHC_II_beta,ENSCCNG00000016269,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01000328.1,116905,117213,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCNG00000016269,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01000328.1,120863,121009,+,IgC1_MHC_II_beta_HLA-DQ_I-A,MTKA01000328.1_2:1,MTKA01000328.1_2:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01000328.1,141748,142053,-,IgC1_MHC_II_alpha_HLA-DQ,ENSCCNG00000016283,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01000328.1,142485,142736,-,MHC_II_alpha,ENSCCNG00000016283,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01000328.1,231339,231584,+,MHC_II_beta,ENSCCNG00000016301,NA,protein_coding,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01000328.1,237086,237373,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000016301,NA,protein_coding,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01001110.1,7759,7992,+,MHC_II_beta,ENSCCNG00000018736,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,american.beaver,MTKA01001110.1,8488,8772,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSCCNG00000018736,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,american.beaver,MTKA01001195.1,1651782,1652021,-,MHC_II_beta,ENSCCNG00000026793,NA,protein_coding,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01001195.1,1665344,1665592,+,MHC_II_alpha,ENSCCNG00000026794,NA,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01001195.1,1665899,1666189,+,IgC1_MHC_II_alpha,ENSCCNG00000026794,NA,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01008983.1,8923,9141,+,MHC_II_beta,ENSCCNG00000013634;109674661,NA;LOC109674661,protein_coding;pseudogene,aa_OG0026895;aa_OG0028936,TRUE
MHCII,american.beaver,MTKA01008983.1,18160,18444,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000013634;109674661,NA;LOC109674661,protein_coding;pseudogene,aa_OG0026895;aa_OG0028936,TRUE
MHCII,american.beaver,MTKA01008984.1,32733,32921,+,MHC_II_beta,109674663,LOC109674663,pseudogene,NA,TRUE
MHCII,american.beaver,MTKA01008984.1,43858,44001,+,MHC_II_beta,ENSCCNG00000013640;109674663,NA;LOC109674663,protein_coding;pseudogene,aa_OG0031069,TRUE
MHCII,american.beaver,MTKA01008984.1,50790,51077,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000013640;109674663,NA;LOC109674663,protein_coding;pseudogene,aa_OG0031069,TRUE
MHCII,american.beaver,MTKA01008984.1,55110,55396,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000013640,NA,protein_coding,aa_OG0031069,TRUE
MHCII,american.beaver,MTKA01008985.1,7550,7798,+,MHC_II_beta,ENSCCNG00000013661;109674665,NA;LOC109674665,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01008985.1,9282,9566,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000013661;109674665,NA;LOC109674665,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01008985.1,24413,24694,-,IgC1_MHC_II_alpha,ENSCCNG00000014192,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01008985.1,25161,25400,-,MHC_II_alpha,ENSCCNG00000014192,H2-Ea,protein_coding,aa_OG0000240,TRUE
MHCII,american.beaver,MTKA01009077.1,10799,11086,+,IgC1_MHC_II_beta_HLA-DR,MTKA01009077.1_1:1,MTKA01009077.1_1:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01009077.1,41851,42102,+,MHC_II_beta,ENSCCNG00000014558;109674703,NA;LOC109674703,protein_coding;mRNA,aa_OG0000041;aa_OG0026895,TRUE
MHCII,american.beaver,MTKA01009077.1,67114,67428,+,MHC_II_beta,ENSCCNG00000014565,NA,protein_coding,aa_OG0026895,TRUE
MHCII,american.beaver,MTKA01009077.1,79077,79322,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000014565;109674703,NA;LOC109674703,protein_coding;mRNA,aa_OG0026895,TRUE
MHCII,american.beaver,MTKA01009077.1,117633,117884,+,MHC_II_beta,ENSCCNG00000014827;109674702,NA;LOC109674702,protein_coding;mRNA,aa_OG0021782;aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01009077.1,131402,131689,+,IgC1_MHC_II_beta_HLA-DR,ENSCCNG00000014827;109674702,NA;LOC109674702,protein_coding;mRNA,aa_OG0021782;aa_OG0000041,TRUE
MHCII,american.beaver,MTKA01009077.1,154717,154779,+,MHC_II_beta,MTKA01009077.1_2:1,MTKA01009077.1_2:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01009077.1,154782,154931,+,MHC_II_beta,MTKA01009077.1_2:1,MTKA01009077.1_2:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01009077.1,158675,158760,+,IgC1_MHC_II_beta_HLA-DR,MTKA01009077.1_2:2,MTKA01009077.1_2:2,NA,NA,FALSE
MHCII,american.beaver,MTKA01009085.1,29873,29941,-,MHC_II_beta,MTKA01009085.1_1:1,MTKA01009085.1_1:1,NA,NA,FALSE
MHCII,american.beaver,MTKA01009102.1,13129,13380,+,MHC_II_beta,ENSCCNG00000016794,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000008.1,43192622,43192927,+,IgC1_MHC_II_beta_HLA-DQ_I-A,CZRN01000008.1_1:1,CZRN01000008.1_1:1,NA,NA,FALSE
MHCII,alpine.marmot,CZRN01000021.1,1272264,1272515,+,MHC_II_alpha,ENSMMMG00000018744,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1273087,1273368,+,IgC1_MHC_II_alpha,ENSMMMG00000018744,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1289160,1289513,-,IgC1_MHC_II_beta_HLA-DR,ENSMMMG00000018777,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1291283,1291546,-,MHC_II_beta,ENSMMMG00000018777,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1358141,1358425,-,IgC1_MHC_II_beta_HLA-DR,ENSMMMG00000018780,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1362007,1362258,-,MHC_II_beta,ENSMMMG00000018780,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1441746,1441994,+,MHC_II_alpha,107144061,LOC107144061,pseudogene,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1442564,1442863,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMMMG00000018785;107144061,NA;LOC107144061,protein_coding;pseudogene,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1460878,1461159,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMMMG00000018808,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1462120,1462326,-,MHC_II_beta,ENSMMMG00000018808,NA,protein_coding,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1567532,1567780,+,MHC_II_alpha,107143602,LOC107143602,pseudogene,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1568303,1568602,+,IgC1_MHC_II_alpha_HLA-DQ,107143602,LOC107143602,pseudogene,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1586037,1586309,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMMMG00000024056,NA,protein_coding,aa_OG0022393,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1587310,1587516,-,MHC_II_beta,ENSMMMG00000024056,NA,protein_coding,aa_OG0022393,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1643238,1643531,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMMMG00000024217,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1644003,1644236,-,MHC_II_beta,ENSMMMG00000024217,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1832295,1832576,-,IgC1_MHC_II_alpha,ENSMMMG00000024227,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1832914,1833159,-,MHC_II_alpha,ENSMMMG00000024227,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1848463,1848546,+,MHC_II_beta,ENSMMMG00000024228;107143604,HLA-DPB1;LOC107143604,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1851726,1852010,+,IgC1_MHC_II_beta_HLA-DP,ENSMMMG00000024228;107143604,HLA-DPB1;LOC107143604,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,alpine.marmot,CZRN01000021.1,1883705,1883905,+,MHC_II_beta,CZRN01000021.1_1:1,CZRN01000021.1_1:1,NA,NA,FALSE
MHCII,alpine.marmot,CZRN01000021.1,1883913,1884185,+,MHC_II_beta,CZRN01000021.1_1:1,CZRN01000021.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01000005.1,18421707,18421964,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSUPAG00010017320,NA,protein_coding,aa_OG0012340,TRUE
MHCII,arctic.ground.squirrel,QVIC01000026.1,224224,224439,-,MHC_II_alpha,QVIC01000026.1_1:1,QVIC01000026.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01000026.1,236566,236799,+,MHC_II_beta,ENSUPAG00010005123,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01000026.1,261182,261402,+,MHC_II_beta,ENSUPAG00010005123,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01000026.1,279143,279424,-,IgC1_MHC_II_alpha,ENSUPAG00010012558,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01000026.1,279748,280008,-,MHC_II_alpha,ENSUPAG00010012558,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01000026.1,289634,289870,+,MHC_II_beta,ENSUPAG00010005123,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01000950.1,47810,48073,+,MHC_II_beta,ENSUPAG00010021133,NA,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01000950.1,49899,50186,+,IgC1_MHC_II_beta_HLA-DR,ENSUPAG00010021133,NA,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01000950.1,66149,66409,-,IgC1_MHC_II_alpha,ENSUPAG00010023266,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01000950.1,66996,67247,-,MHC_II_alpha,ENSUPAG00010023266,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,22341,22640,-,IgC1_MHC_II_alpha_HLA-DQ,ENSUPAG00010018921;113177800,NA;LOC113177800,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,23215,23469,-,MHC_II_alpha,ENSUPAG00010018921;113177800,NA;LOC113177800,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,64595,64822,+,MHC_II_beta,ENSUPAG00010019436,NA,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,67433,67717,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSUPAG00010019436,NA,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,70643,70822,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSUPAG00010019436,NA,protein_coding,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01001262.1,75928,76239,-,IgC1_MHC_II_alpha_HLA-DQ,ENSUPAG00010019446;113177801,NA;LOC113177801,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001323.1,3574,3855,-,IgC1_MHC_II_alpha_HLA-DQ,ENSUPAG00010019992;113177872,NA;LOC113177872,protein_coding;pseudogene,aa_OG0034516;aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001323.1,4403,4642,-,MHC_II_alpha,ENSUPAG00010019992;113177872,NA;LOC113177872,protein_coding;pseudogene,aa_OG0034516;aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001323.1,116694,116942,+,MHC_II_beta,ENSUPAG00010020085;113177873,NA;LOC113177873,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,arctic.ground.squirrel,QVIC01001593.1,4996,5289,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSUPAG00010004730,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,arctic.ground.squirrel,QVIC01001593.1,5762,5995,-,MHC_II_beta,ENSUPAG00010004730,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,arctic.ground.squirrel,QVIC01001711.1,17450,17696,+,MHC_II_alpha,ENSUPAG00010005771;113178175,NA;LOC113178175,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001711.1,18164,18478,+,IgC1_MHC_II_alpha_HLA-DQ,ENSUPAG00010005771;113178175,NA;LOC113178175,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,arctic.ground.squirrel,QVIC01001711.1,37001,37096,-,MHC_II_beta,QVIC01001711.1_1:1,QVIC01001711.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01001711.1,37113,37220,-,MHC_II_beta,QVIC01001711.1_1:1,QVIC01001711.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01002123.1,12774,12995,+,MHC_II_beta,QVIC01002123.1_1:1,QVIC01002123.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01002462.1,308,589,-,IgC1_MHC_II_beta_HLA-DQ_I-A,QVIC01002462.1_1:1,QVIC01002462.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01009097.1,822,1073,+,MHC_II_alpha,QVIC01009097.1_1:1,QVIC01009097.1_1:1,NA,NA,FALSE
MHCII,arctic.ground.squirrel,QVIC01011708.1,748,953,-,MHC_II_beta,QVIC01011708.1_1:1,QVIC01011708.1_1:1,NA,NA,FALSE
MHCII,beluga.whale,ML702011.1,5766760,5766972,-,IgC1_MHC_II_alpha_I-EK,111183283,LOC111183283,pseudogene,aa_OG0011445,TRUE
MHCII,beluga.whale,ML702018.1,5691055,5691315,+,MHC_II_beta,ENSDLEG00000021992;115804208,NA;LOC115804208,protein_coding;mRNA,aa_OG0023157,TRUE
MHCII,beluga.whale,ML702018.1,5694546,5694912,+,IgC1_MHC_II_beta_HLA-DR,ENSDLEG00000021992;115804208,NA;LOC115804208,protein_coding;mRNA,aa_OG0023157,TRUE
MHCII,beluga.whale,ML702018.1,5709920,5710219,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDLEG00000021994,NA,protein_coding,aa_OG0005431,TRUE
MHCII,beluga.whale,ML702018.1,5710700,5710930,-,MHC_II_beta,ENSDLEG00000021994,NA,protein_coding,aa_OG0005431,TRUE
MHCII,beluga.whale,ML702018.1,5892706,5892996,+,IgC1_MHC_II_beta_HLA-DP,ML702018.1_1:1,ML702018.1_1:1,NA,NA,FALSE
MHCII,beluga.whale,ML702018.1,22087221,22087436,+,MHC_II_beta,ENSDLEG00000002245,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22090601,22090897,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSDLEG00000002245,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22103961,22104260,-,IgC1_MHC_II_alpha_HLA-DQ,ENSDLEG00000002263,NA,protein_coding,aa_OG0000240,TRUE
MHCII,beluga.whale,ML702018.1,22104700,22104951,-,MHC_II_alpha,ENSDLEG00000002263,NA,protein_coding,aa_OG0000240,TRUE
MHCII,beluga.whale,ML702018.1,22147992,22148228,+,MHC_II_beta,ENSDLEG00000002285,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22150514,22150834,+,IgC1_MHC_II_beta_HLA-DR,ENSDLEG00000002285,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22166806,22167051,+,MHC_II_beta,ENSDLEG00000002322,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22169335,22169655,+,IgC1_MHC_II_beta_HLA-DR,ENSDLEG00000002322,NA,protein_coding,aa_OG0000041,TRUE
MHCII,beluga.whale,ML702018.1,22182722,22183012,-,IgC1_MHC_II_alpha,ENSDLEG00000002344,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,beluga.whale,ML702018.1,22183450,22183713,-,MHC_II_alpha,ENSDLEG00000002344,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,sperm.whale,18,68299331,68299591,+,MHC_II_beta,ENSPCTG00005021294;102974191,NA;LOC102974191,protein_coding;pseudogene,aa_OG0023157;aa_OG0000041,TRUE
MHCII,sperm.whale,18,68302603,68302963,+,IgC1_MHC_II_beta_HLA-DR,ENSPCTG00005021294;102974191,NA;LOC102974191,protein_coding;pseudogene,aa_OG0023157;aa_OG0000041,TRUE
MHCII,sperm.whale,18,68316881,68317180,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCTG00005021383,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,sperm.whale,18,68317657,68317890,-,MHC_II_beta,ENSPCTG00005021383,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,sperm.whale,18,68486846,68486971,+,MHC_II_beta,ENSPCTG00005021294,NA,NA,NA,FALSE
MHCII,sperm.whale,18,68489304,68489591,+,IgC1_MHC_II_beta_HLA-DP,ENSPCTG00005021294,NA,protein_coding,aa_OG0023157,TRUE
MHCII,sperm.whale,18,84159303,84159623,-,IgC1_MHC_II_beta_HLA-DR,ENSPCTG00005004822,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84162209,84162475,-,IgC1_MHC_II_beta_HLA-DR,102978546,LOC102978546,mRNA,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84225814,84226065,+,MHC_II_alpha,ENSPCTG00005004880,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sperm.whale,18,84226507,84226806,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPCTG00005004880,NA,protein_coding,aa_OG0000240,TRUE
MHCII,sperm.whale,18,84239864,84240163,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPCTG00005004822,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84243544,84243780,-,MHC_II_beta,ENSPCTG00005004822,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84565457,84565669,+,MHC_II_beta,ENSPCTG00005005163,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84567969,84568289,+,IgC1_MHC_II_beta_HLA-DR,ENSPCTG00005005163,NA,protein_coding,aa_OG0000041,TRUE
MHCII,sperm.whale,18,84579676,84579957,-,IgC1_MHC_II_alpha,ENSPCTG00005005185,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,sperm.whale,18,84580424,84580696,-,MHC_II_alpha,ENSPCTG00005005185,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,sperm.whale,ML161577.1,2964,3158,-,MHC_II_alpha,102994322,LOC102994322,mRNA,aa_OG0005572,TRUE
MHCII,sperm.whale,PGGR02128442.1,3,98,-,MHC_II_beta,PGGR02128442.1_1:1,PGGR02128442.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02004704.1,420856,420987,-,IgC1_MHC_II_beta_HLA-DR,114027015,LOC114027015,NA,NA,FALSE
MHCII,common.wombat,UNPS02004704.1,422184,422396,+,MHC_II_beta,114027015,LOC114027015,pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02004704.1,422427,422744,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010015911;114027015,NA;LOC114027015,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02004993.1,5694,5921,+,MHC_II_beta,ENSVURG00010019695,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02009859.1,182,424,-,MHC_II_alpha,UNPS02009859.1_1:1,UNPS02009859.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02009860.1,641,883,+,MHC_II_alpha,UNPS02009860.1_1:1,UNPS02009860.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02010114.1,182,424,-,MHC_II_alpha,UNPS02010114.1_1:1,UNPS02010114.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02010115.1,645,887,+,MHC_II_alpha,UNPS02010115.1_1:1,UNPS02010115.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014225.1,408266,408474,-,IgC1_MHC_II_beta_HLA-DP,UNPS02014225.1_1:1,UNPS02014225.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014774.1,5895643,5895930,+,IgC1_MHC_II_alpha_HLA-DR,UNPS02014774.1_1:1,UNPS02014774.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014789.1,9847352,9847621,-,IgC1_MHC_II_beta_HLA-DQ_I-A,UNPS02014789.1_1:1,UNPS02014789.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014810.1,43397501,43397791,+,IgC1_MHC_II_beta_HLA-DQ_I-A,UNPS02014810.1_1:1,UNPS02014810.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014811.1,7480998,7481303,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010005536;114053567,NA;LOC114053567,protein_coding;pseudogene,aa_OG0028169;rna_OG0044611,TRUE
MHCII,common.wombat,UNPS02014811.1,7483997,7484224,-,MHC_II_beta,ENSVURG00010005536;114053567,NA;LOC114053567,protein_coding;pseudogene,aa_OG0028169;rna_OG0044611,TRUE
MHCII,common.wombat,UNPS02014811.1,7498010,7498258,+,MHC_II_alpha,ENSVURG00010005576;114053569,NA;LOC114053569,protein_coding;mRNA,aa_OG0026918,TRUE
MHCII,common.wombat,UNPS02014811.1,7499193,7499477,+,IgC1_MHC_II_alpha,ENSVURG00010005576;114053569,NA;LOC114053569,protein_coding;mRNA,aa_OG0026918,TRUE
MHCII,common.wombat,UNPS02014811.1,7711126,7711371,+,MHC_II_alpha,ENSVURG00010006059,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,common.wombat,UNPS02014811.1,7711857,7712138,+,IgC1_MHC_II_alpha,ENSVURG00010006059,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,common.wombat,UNPS02014811.1,7813226,7813336,+,MHC_II_beta,UNPS02014811.1_1:1,UNPS02014811.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014811.1,7813344,7813439,+,MHC_II_beta,UNPS02014811.1_1:1,UNPS02014811.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014811.1,7815257,7815559,+,IgC1_MHC_II_beta_HLA-DQ_I-A,UNPS02014811.1_1:2,UNPS02014811.1_1:2,NA,NA,FALSE
MHCII,common.wombat,UNPS02014811.1,7856294,7856515,+,MHC_II_beta,ENSVURG00010006097,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,7856994,7857281,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006097,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,7932884,7933171,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006135,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,7933639,7933884,-,MHC_II_beta,ENSVURG00010006135,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,7982657,7982891,-,MHC_II_beta,UNPS02014811.1_2:1,UNPS02014811.1_2:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014811.1,7992199,7992447,+,MHC_II_alpha,ENSVURG00010006184,NA,protein_coding,aa_OG0000240,TRUE
MHCII,common.wombat,UNPS02014811.1,7992875,7993159,+,IgC1_MHC_II_alpha,ENSVURG00010006184,NA,protein_coding,aa_OG0000240,TRUE
MHCII,common.wombat,UNPS02014811.1,8022325,8022603,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006135,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,8023035,8023259,-,MHC_II_beta,ENSVURG00010006135,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014811.1,8064646,8064948,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006194;114053575,NA;LOC114053575,protein_coding;pseudogene,aa_OG0000041;aa_OG0000002,TRUE
MHCII,common.wombat,UNPS02014811.1,8068141,8068368,-,MHC_II_beta,114053575,LOC114053575,pseudogene,aa_OG0000002,TRUE
MHCII,common.wombat,UNPS02014811.1,8686360,8686476,-,MHC_II_alpha,UNPS02014811.1_4:1,UNPS02014811.1_4:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014826.1,12205150,12205224,-,MHC_II_beta,UNPS02014826.1_1:1,UNPS02014826.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014826.1,12205232,12205366,-,MHC_II_beta,UNPS02014826.1_1:1,UNPS02014826.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014826.1,12268910,12269200,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006671;114025047,NA;LOC114025047,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12271038,12271229,-,MHC_II_beta,ENSVURG00010006671;114025047,NA;LOC114025047,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12303725,12303943,+,IgC1_MHC_II_beta_HLA-DR,UNPS02014826.1_2:1,UNPS02014826.1_2:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02014826.1,12360160,12360450,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010006756;114025049,NA;LOC114025049,protein_coding;mRNA,aa_OG0025370,TRUE
MHCII,common.wombat,UNPS02014826.1,12366799,12367059,-,MHC_II_beta,ENSVURG00010006756;114025049,NA;LOC114025049,protein_coding;mRNA,aa_OG0025370,TRUE
MHCII,common.wombat,UNPS02014826.1,12432602,12432931,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010008062;114025089,NA;LOC114025089,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12434741,12434956,-,MHC_II_beta,ENSVURG00010008062;114025089,NA;LOC114025089,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12495538,12495780,+,MHC_II_beta,114025050,LOC114025050,mRNA,aa_OG0028093,TRUE
MHCII,common.wombat,UNPS02014826.1,12496157,12496396,+,IgC1_MHC_II_beta_HLA-DQ_I-A,114025050,LOC114025050,mRNA,aa_OG0028093,TRUE
MHCII,common.wombat,UNPS02014826.1,12546713,12547003,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSVURG00010008057,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12548791,12549018,-,MHC_II_beta,ENSVURG00010008057,NA,protein_coding,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12606427,12606687,-,IgC1_MHC_II_beta_HLA-DQ_I-A,114025052,LOC114025052,pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014826.1,12662303,12662521,+,MHC_II_beta,114025096,LOC114025096,pseudogene,aa_OG0000148,TRUE
MHCII,common.wombat,UNPS02014826.1,12662897,12663178,+,IgC1_MHC_II_beta_HLA-DQ_I-A,114025096,LOC114025096,pseudogene,aa_OG0000148,TRUE
MHCII,common.wombat,UNPS02014852.1,10968120,10968284,+,MHC_II_beta,114027113,LOC114027113,pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014852.1,10968313,10968638,+,IgC1_MHC_II_beta_HLA-DR,114027113,LOC114027113,pseudogene,aa_OG0000041,TRUE
MHCII,common.wombat,UNPS02014959.1,9799122,9799406,+,IgC1_MHC_II_beta_HLA-DR,UNPS02014959.1_1:1,UNPS02014959.1_1:1,NA,NA,FALSE
MHCII,common.wombat,UNPS02015005.1,22482,22607,+,MHC_II_beta,UNPS02015005.1_1:1,UNPS02015005.1_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_0,129466221,129466503,+,IgC1_MHC_II_beta_HLA-DR,scaffold_0_1:1,scaffold_0_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_0,129736279,129736491,+,MHC_II_beta,ENSLAFG00000031139;100659676,NA;LOC100659676,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_0,129738809,129739117,+,IgC1_MHC_II_beta_HLA-DR,ENSLAFG00000031139;100659676,NA;LOC100659676,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,12158,12448,-,IgC1_MHC_II_alpha_HLA-DR,100664981,LOC100664981,mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,12953,13156,-,MHC_II_alpha,100664981,LOC100664981,mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,37569,37880,-,IgC1_MHC_II_alpha,ENSLAFG00000032767;100665266,NA;LOC100665266,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,38384,38638,-,MHC_II_alpha,ENSLAFG00000032767;100665266,NA;LOC100665266,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,93796,94098,-,IgC1_MHC_II_alpha_HLA-DR,100665550,LOC100665550,mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,94611,94796,-,MHC_II_alpha,100665550,LOC100665550,mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_105,127787,128095,+,IgC1_MHC_II_beta_HLA-DR,scaffold_105_1:1,scaffold_105_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,145468,145560,-,MHC_II_alpha,scaffold_105_1:2,scaffold_105_1:2,NA,NA,FALSE
MHCII,elephant,scaffold_105,184555,184854,+,IgC1_MHC_II_beta_HLA-DR,scaffold_105_1:3,scaffold_105_1:3,NA,NA,FALSE
MHCII,elephant,scaffold_105,192501,192587,+,MHC_II_beta,scaffold_105_1:4,scaffold_105_1:4,NA,NA,FALSE
MHCII,elephant,scaffold_105,192598,192762,+,MHC_II_beta,scaffold_105_1:4,scaffold_105_1:4,NA,NA,FALSE
MHCII,elephant,scaffold_105,214864,215058,-,MHC_II_alpha,scaffold_105_1:5,scaffold_105_1:5,NA,NA,FALSE
MHCII,elephant,scaffold_105,218716,218910,-,MHC_II_alpha,scaffold_105_1:6,scaffold_105_1:6,NA,NA,FALSE
MHCII,elephant,scaffold_105,295023,295271,+,MHC_II_beta,ENSLAFG00000001315;100665834,NA;LOC100665834,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,299630,299938,+,IgC1_MHC_II_beta_HLA-DR,ENSLAFG00000001315;100665834,NA;LOC100665834,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,310864,311146,-,IgC1_MHC_II_alpha,scaffold_105_2:1,scaffold_105_2:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,311774,311887,-,MHC_II_alpha,scaffold_105_2:1,scaffold_105_2:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,1192358,1192678,-,IgC1_MHC_II_beta_HLA-DR,104845474,LOC104845474,ncRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,1195003,1195146,-,MHC_II_beta,104845474,LOC104845474,NA,NA,FALSE
MHCII,elephant,scaffold_105,2793001,2793288,-,IgC1_MHC_II_beta_HLA-DP,ENSLAFG00000029575;111748124,NA;LOC111748124,protein_coding;pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,2794426,2794611,-,MHC_II_beta,ENSLAFG00000029575;111748122,NA;LOC111748122,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,2817509,2817766,+,MHC_II_alpha,scaffold_105_4:1,scaffold_105_4:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,2819155,2819460,+,IgC1_MHC_II_alpha,scaffold_105_4:1,scaffold_105_4:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,2829199,2829464,-,IgC1_MHC_II_beta_HLA-DP,scaffold_105_4:2,scaffold_105_4:2,NA,NA,FALSE
MHCII,elephant,scaffold_105,2906987,2907271,-,IgC1_MHC_II_beta_HLA-DP,111748125,LOC111748125,mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,2924666,2925001,+,IgC1_MHC_II_alpha,100671798,LOC100671798,mRNA,aa_OG0000240,TRUE
MHCII,elephant,scaffold_105,3200261,3200353,+,MHC_II_beta,ENSLAFG00000004052;100673529,HLA-DOB;LOC100673529,NA,NA,FALSE
MHCII,elephant,scaffold_105,3201593,3201889,+,MHC_II_beta,ENSLAFG00000004052;100673529,HLA-DOB;LOC100673529,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,elephant,scaffold_105,3202251,3202562,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSLAFG00000004052;100673529,HLA-DOB;LOC100673529,protein_coding;mRNA,aa_OG0012340,TRUE
MHCII,elephant,scaffold_105,3247335,3247637,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSLAFG00000029261;100673824,NA;LOC100673824,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_105,3251154,3251282,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_105_6:1,scaffold_105_6:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,3429010,3429327,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSLAFG00000030016;100674385,NA;LOC100674385,protein_coding;pseudogene,aa_OG0000041;rna_OG0101334,TRUE
MHCII,elephant,scaffold_105,3432831,3432992,+,IgC1_MHC_II_beta_HLA-DQ_I-A,100674385,LOC100674385,pseudogene,rna_OG0101334,TRUE
MHCII,elephant,scaffold_105,3455296,3455424,+,MHC_II_beta,ENSLAFG00000018482;100674385,NA;LOC100674385,protein_coding;pseudogene,aa_OG0000041;rna_OG0101334,TRUE
MHCII,elephant,scaffold_105,3459720,3460003,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSLAFG00000018482;100674385,NA;LOC100674385,protein_coding;pseudogene,aa_OG0000041;rna_OG0101334,TRUE
MHCII,elephant,scaffold_105,3482378,3482677,-,IgC1_MHC_II_alpha_HLA-DQ,ENSLAFG00000031292;100664409,NA;LOC100664409,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,elephant,scaffold_105,3483078,3483326,-,MHC_II_alpha,ENSLAFG00000031292;100664409,NA;LOC100664409,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,elephant,scaffold_105,3546722,3546877,+,MHC_II_beta,scaffold_105_7:1,scaffold_105_7:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,3549470,3549789,+,IgC1_MHC_II_beta_HLA-DR,scaffold_105_7:1,scaffold_105_7:1,NA,NA,FALSE
MHCII,elephant,scaffold_105,3565899,3566210,-,IgC1_MHC_II_alpha,ENSLAFG00000001026;100674958,NA;LOC100674958,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,elephant,scaffold_105,3566689,3566943,-,MHC_II_alpha,ENSLAFG00000001026;100674958,NA;LOC100674958,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,elephant,scaffold_1229,3780,3998,-,MHC_II_beta,104847402,LOC104847402,pseudogene,rna_OG0101334,TRUE
MHCII,elephant,scaffold_284,2249,2567,+,IgC1_MHC_II_beta_HLA-DR,111747584,LOC111747584,pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,4445,4651,+,MHC_II_beta,111747584;100674879,LOC111747584;LOC100674879,pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,6866,7174,+,IgC1_MHC_II_beta_HLA-DR,100674879,LOC100674879,pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,38607,38850,+,MHC_II_beta,ENSLAFG00000003591;100675165,NA;LOC100675165,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,41107,41415,+,IgC1_MHC_II_beta_HLA-DR,ENSLAFG00000003591;100675165,NA;LOC100675165,protein_coding;misc_RNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,61851,62162,-,IgC1_MHC_II_alpha_HLA-DR,ENSLAFG00000004591;100675445,NA;LOC100675445,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_284,62667,62852,-,MHC_II_alpha,ENSLAFG00000004591;100675445,NA;LOC100675445,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_284,94550,94813,+,IgC1_MHC_II_beta_HLA-DR,100675728,LOC100675728,mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_284,117596,117886,-,IgC1_MHC_II_alpha_HLA-DR,100676013,LOC100676013,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_284,118409,118597,-,MHC_II_alpha,100676013,LOC100676013,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_284,179504,179805,-,IgC1_MHC_II_alpha_HLA-DR,scaffold_284_1:1,scaffold_284_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_307,47161,47394,+,MHC_II_beta,100668513,LOC100668513,pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,50470,50772,+,IgC1_MHC_II_beta_HLA-DQ_I-A,100668513,LOC100668513,pseudogene,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,54372,54506,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_307_1:1,scaffold_307_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_307,81280,81489,+,MHC_II_beta,100668794,LOC100668794,mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,93549,93848,+,IgC1_MHC_II_beta_HLA-DQ_I-A,100668794,LOC100668794,mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,97930,98091,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_307_2:1,scaffold_307_2:1,NA,NA,FALSE
MHCII,elephant,scaffold_307,144620,144832,+,MHC_II_beta,ENSLAFG00000022970;100669075,NA;LOC100669075,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,147945,148228,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSLAFG00000022970;100669075,NA;LOC100669075,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_307,151746,151913,+,IgC1_MHC_II_beta_HLA-DQ_I-A,scaffold_307_3:1,scaffold_307_3:1,NA,NA,FALSE
MHCII,elephant,scaffold_332,5732,6052,-,IgC1_MHC_II_beta_HLA-DR,ENSLAFG00000026868;100665293,NA;LOC100665293,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_332,8345,8593,-,MHC_II_beta,ENSLAFG00000026868;100665293,NA;LOC100665293,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_332,48968,49156,+,MHC_II_alpha,100665576,LOC100665576,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_332,49679,49969,+,IgC1_MHC_II_alpha_HLA-DR,100665576,LOC100665576,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_332,69936,70244,-,IgC1_MHC_II_beta_HLA-DR,scaffold_332_1:1,scaffold_332_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_332,117624,117827,+,MHC_II_alpha,ENSLAFG00000025687;100666146,NA;LOC100666146,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_332,118337,118633,+,IgC1_MHC_II_alpha_HLA-DR,ENSLAFG00000025687;100666146,NA;LOC100666146,protein_coding;mRNA,aa_OG0021267,TRUE
MHCII,elephant,scaffold_332,140485,140805,-,IgC1_MHC_II_beta_HLA-DR,100665860,LOC100665860,mRNA,aa_OG0000041,TRUE
MHCII,elephant,scaffold_468,1592,1831,+,MHC_II_alpha,ENSLAFG00000030327,NA,protein_coding,aa_OG0021267,TRUE
MHCII,elephant,scaffold_468,2325,2636,+,IgC1_MHC_II_alpha_HLA-DR,ENSLAFG00000030327,NA,protein_coding,aa_OG0021267,TRUE
MHCII,elephant,scaffold_468,20079,20267,+,MHC_II_alpha,100667290,LOC100667290,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_468,20774,21085,+,IgC1_MHC_II_alpha_HLA-DR,100667290,LOC100667290,pseudogene,aa_OG0000240,TRUE
MHCII,elephant,scaffold_468,49455,49718,-,MHC_II_beta,scaffold_468_1:1,scaffold_468_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_60,10034685,10034965,+,IgC1_MHC_II_beta_HLA-DR,scaffold_60_1:1,scaffold_60_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_605,2475,2729,+,MHC_II_alpha,ENSLAFG00000032598,NA,protein_coding,aa_OG0021267,TRUE
MHCII,elephant,scaffold_605,3235,3543,+,IgC1_MHC_II_alpha_HLA-DR,ENSLAFG00000032598,NA,protein_coding,aa_OG0021267,TRUE
MHCII,elephant,scaffold_605,21022,21207,+,MHC_II_alpha,scaffold_605_1:1,scaffold_605_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_605,21712,22023,+,IgC1_MHC_II_alpha_HLA-DR,scaffold_605_1:1,scaffold_605_1:1,NA,NA,FALSE
MHCII,elephant,scaffold_725,19632,19958,-,IgC1_MHC_II_alpha,ENSLAFG00000021735,NA,protein_coding,aa_OG0000240,TRUE
MHCII,elephant,scaffold_725,20227,20487,-,MHC_II_alpha,ENSLAFG00000021735,NA,protein_coding,aa_OG0000240,TRUE
MHCII,elephant,scaffold_811,17649,17933,-,IgC1_MHC_II_beta_HLA-DP,ENSLAFG00000006477;100671834,NA;LOC100671834,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,gelada,4,33411810,33412079,+,MHC_II_alpha,ENSTGEG00000016024;112622558,NA;LOC112622558,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,gelada,4,33412358,33412672,+,IgC1_MHC_II_alpha,ENSTGEG00000016024;112622558,NA;LOC112622558,protein_coding;mRNA,aa_OG0000240,TRUE
MHCII,gelada,4,33503368,33503616,+,MHC_II_beta,ENSTGEG00000020655,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,33505843,33506253,+,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000020655,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,33550195,33550413,+,MHC_II_beta,ENSTGEG00000026328,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,33553016,33553315,+,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000026328,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,33599663,33599890,+,MHC_II_beta,ENSTGEG00000029325;112622413,NA;LOC112622413,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,gelada,4,33602154,33602453,+,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000029325;112622413,NA;LOC112622413,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,gelada,4,33630544,33630865,+,MHC_II_beta,ENSTGEG00000029354;112622559,NA;LOC112622559,protein_coding;pseudogene,aa_OG0021787;aa_OG0019608,TRUE
MHCII,gelada,4,33633392,33633691,+,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000029354;112622559,NA;LOC112622559,protein_coding;pseudogene,aa_OG0021787;aa_OG0019608,TRUE
MHCII,gelada,4,33665446,33665773,+,IgC1_MHC_II_beta_HLA-DR,112622559,LOC112622559,pseudogene,aa_OG0019608,TRUE
MHCII,gelada,4,33679437,33679538,+,MHC_II_alpha,ENSTGEG00000029357,NA,NA,NA,FALSE
MHCII,gelada,4,33680863,33681117,+,MHC_II_alpha,ENSTGEG00000029357,NA,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,33681463,33681744,+,IgC1_MHC_II_alpha,ENSTGEG00000029357,NA,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,34872999,34873247,+,MHC_II_alpha,ENSTGEG00000029438,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,34873731,34874045,+,IgC1_MHC_II_alpha_HLA-DR,ENSTGEG00000029438,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,34890609,34890911,-,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000029439;112622565,NA;LOC112622565,protein_coding;pseudogene,aa_OG0021258;aa_OG0001865,TRUE
MHCII,gelada,4,34897820,34898026,-,MHC_II_beta,ENSTGEG00000029439;112622565,NA;LOC112622565,protein_coding;pseudogene,aa_OG0021258;aa_OG0001865,TRUE
MHCII,gelada,4,34921430,34921729,-,IgC1_MHC_II_beta_HLA-DR,ENSTGEG00000029441,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,34924011,34924259,-,MHC_II_beta,ENSTGEG00000029441,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,34971188,34971439,+,MHC_II_alpha,ENSTGEG00000029442,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,34971778,34972134,+,IgC1_MHC_II_alpha_HLA-DQ,ENSTGEG00000029442,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,gelada,4,34985087,34985392,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTGEG00000029443,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,34987896,34988126,-,MHC_II_beta,ENSTGEG00000029443,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,35046985,35047278,+,IgC1_MHC_II_alpha_HLA-DQ,4_2:1,4_2:1,NA,NA,FALSE
MHCII,gelada,4,35067548,35067616,-,IgC1_MHC_II_beta_HLA-DQ_I-A,4_2:2,4_2:2,NA,NA,FALSE
MHCII,gelada,4,35067619,35067672,-,IgC1_MHC_II_beta_HLA-DQ_I-A,4_2:2,4_2:2,NA,NA,FALSE
MHCII,gelada,4,35108353,35108670,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTGEG00000029444,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gelada,4,35109117,35109350,-,MHC_II_beta,ENSTGEG00000029444,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,gelada,4,35382020,35382256,+,MHC_II_beta,ENSTGEG00000029455,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,35386296,35386631,+,IgC1_MHC_II_beta_HLA-DP,ENSTGEG00000029455,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,35393419,35393707,-,IgC1_MHC_II_alpha,ENSTGEG00000029456,NA,protein_coding,aa_OG0023115,TRUE
MHCII,gelada,4,35394125,35394334,-,MHC_II_alpha,ENSTGEG00000029456,NA,protein_coding,aa_OG0023115,TRUE
MHCII,gelada,4,35417139,35417378,+,MHC_II_beta,ENSTGEG00000029457,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,35428556,35428848,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSTGEG00000029457,NA,protein_coding,aa_OG0000041,TRUE
MHCII,gelada,4,35432093,35432239,-,MHC_II_alpha,ENSTGEG00000029456,NA,protein_coding,aa_OG0023115,TRUE
MHCII,gelada,5,42424484,42424815,+,IgC1_MHC_II_beta_HLA-DP,5_1:1,5_1:1,NA,NA,FALSE
MHCII,meerkat,7,30493037,30493291,+,MHC_II_alpha,ENSSSUG00005008470,NA,protein_coding,aa_OG0000240,TRUE
MHCII,meerkat,7,30493729,30494034,+,IgC1_MHC_II_alpha_HLA-DR,ENSSSUG00005008470,NA,protein_coding,aa_OG0000240,TRUE
MHCII,meerkat,7,30521807,30522091,-,IgC1_MHC_II_beta_HLA-DR,ENSSSUG00005008538,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30583986,30584234,+,MHC_II_beta,ENSSSUG00005008580,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30585634,30585816,-,MHC_II_beta,ENSSSUG00005008580,NA,NA,NA,FALSE
MHCII,meerkat,7,30617819,30618054,+,MHC_II_alpha,ENSSSUG00005008622;115296368,NA;LOC115296368,protein_coding;pseudogene,aa_OG0039174;aa_OG0000240,TRUE
MHCII,meerkat,7,30618510,30618623,+,IgC1_MHC_II_alpha,ENSSSUG00005008622;115296368,NA;LOC115296368,protein_coding;pseudogene,aa_OG0039174;aa_OG0000240,TRUE
MHCII,meerkat,7,30619087,30619263,+,IgC1_MHC_II_alpha_HLA-DR,ENSSSUG00005008622;115296368,NA;LOC115296368,protein_coding;pseudogene,aa_OG0039174;aa_OG0000240,TRUE
MHCII,meerkat,7,30657345,30657527,-,IgC1_MHC_II_beta_HLA-DR,ENSSSUG00005008728,NA,protein_coding,aa_OG0024533,TRUE
MHCII,meerkat,7,30659908,30660192,+,IgC1_MHC_II_beta_HLA-DR,ENSSSUG00005008580,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30684389,30684634,-,MHC_II_beta,ENSSSUG00005008538,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30768371,30768676,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSSUG00005008768,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30770331,30770558,-,MHC_II_beta,ENSSSUG00005008768,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,30841900,30842199,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSSSUG00005008823,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,meerkat,7,30842680,30842913,-,MHC_II_beta,ENSSSUG00005008823,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,meerkat,7,31045316,31045578,+,IgC1_MHC_II_beta_HLA-DP,7_2:1,7_2:1,NA,NA,FALSE
MHCII,meerkat,7,31056120,31056446,-,IgC1_MHC_II_alpha,ENSSSUG00005009803,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,meerkat,7,31056774,31057028,-,MHC_II_alpha,ENSSSUG00005009803,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,meerkat,7,31069163,31069384,+,MHC_II_beta,ENSSSUG00005009927,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,7,31070321,31070626,+,IgC1_MHC_II_beta_HLA-DP,ENSSSUG00005009927,HLA-DPB1,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,VCRZ01000153.1,25829,26113,-,IgC1_MHC_II_beta_HLA-DR,ENSSSUG00005014414;115284688,NA;LOC115284688,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,meerkat,VCRZ01000153.1,57628,57912,-,IgC1_MHC_II_beta_HLA-DR,ENSSSUG00005014414,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,VCRZ01000153.1,59681,59929,-,MHC_II_beta,ENSSSUG00005014414,NA,protein_coding,aa_OG0000041,TRUE
MHCII,meerkat,VCRZ01003130.1,990,1346,-,IgC1_MHC_II_alpha_HLA-DQ,ENSSSUG00005011805,NA,protein_coding,aa_OG0000240,TRUE
MHCII,meerkat,VCRZ01003609.1,2,166,+,IgC1_MHC_II_alpha,VCRZ01003609.1_1:1,VCRZ01003609.1_1:1,NA,NA,FALSE
MHCII,meerkat,VCRZ01003634.1,2,166,+,IgC1_MHC_II_alpha,VCRZ01003634.1_1:1,VCRZ01003634.1_1:1,NA,NA,FALSE
MHCII,meerkat,VCRZ01028153.1,3,179,-,MHC_II_alpha,VCRZ01028153.1_1:1,VCRZ01028153.1_1:1,NA,NA,FALSE
MHCII,meerkat,VCRZ01028175.1,594,770,+,MHC_II_alpha,VCRZ01028175.1_1:1,VCRZ01028175.1_1:1,NA,NA,FALSE
MHCII,meerkat,VCRZ01044108.1,164,415,-,MHC_II_alpha,VCRZ01044108.1_1:1,VCRZ01044108.1_1:1,NA,NA,FALSE
MHCII,meerkat,VCRZ01044136.1,227,478,+,MHC_II_alpha,VCRZ01044136.1_1:1,VCRZ01044136.1_1:1,NA,NA,FALSE
MHCII,mongolian.gerbil,NHTI01000055.1,40124,40357,+,MHC_II_alpha,ENSMUGG00000016887,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,40875,41156,+,IgC1_MHC_II_alpha,ENSMUGG00000016887,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,52752,52844,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUGG00000016937,H2-Eb2,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,52921,53286,-,IgC1_MHC_II_beta_HLA-DR,ENSMUGG00000016937;110543117,H2-Eb2;LOC110543117,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,53839,54108,-,MHC_II_beta,ENSMUGG00000016937;110543117,H2-Eb2;LOC110543117,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,76953,77287,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUGG00000016901,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,80697,80834,-,MHC_II_beta,ENSMUGG00000016901,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,80836,80925,-,MHC_II_beta,ENSMUGG00000016901,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,102012,102269,+,MHC_II_alpha,ENSMUGG00000016942,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,102684,102968,+,IgC1_MHC_II_alpha_HLA-DQ,ENSMUGG00000016942,H2-Aa,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,117024,117317,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUGG00000016901,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,118841,119092,-,MHC_II_beta,ENSMUGG00000016901,H2-Ab1,protein_coding,aa_OG0000041,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,145134,145403,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSMUGG00000016950,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,146073,146405,-,MHC_II_beta,ENSMUGG00000016950,H2-Ob,protein_coding,aa_OG0012340,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,264374,264661,-,IgC1_MHC_II_alpha,ENSMUGG00000017321,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,264969,265214,-,MHC_II_alpha,ENSMUGG00000017321,NA,protein_coding,aa_OG0000240,TRUE
MHCII,mongolian.gerbil,NHTI01000055.1,272828,273067,+,MHC_II_beta,ENSMUGG00000017323,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02000135.1,9269393,9269733,+,IgC1_MHC_II_beta_HLA-DP,PDMG02000135.1_1:1,PDMG02000135.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02000354.1,864150,864398,+,MHC_II_alpha,ENSPTEG00000002554,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02000354.1,864878,865168,+,IgC1_MHC_II_alpha_HLA-DR,ENSPTEG00000002554,HLA-DRA,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02000354.1,889688,889972,-,IgC1_MHC_II_beta_HLA-DR,PDMG02000354.1_1:1,PDMG02000354.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02000354.1,896880,897095,-,MHC_II_beta,ENSPTEG00000002591;111532237,NA;LOC111532237,protein_coding;mRNA,aa_OG0021258,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,556799,556945,+,MHC_II_alpha,PDMG02001560.1_1:1,PDMG02001560.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02001560.1,560043,560336,-,IgC1_MHC_II_beta_HLA-DP,111542905,LOC111542905,ncRNA,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,571536,571781,-,MHC_II_beta,ENSPTEG00000024838;111542904,NA;LOC111542904,protein_coding;mRNA,aa_OG0000041;aa_OG0020696,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,612443,612802,-,IgC1_MHC_II_beta_HLA-DP,ENSPTEG00000024838,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,616651,616860,-,MHC_II_beta,ENSPTEG00000024838,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,627719,627991,+,MHC_II_alpha,ENSPTEG00000024859,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,628291,628614,+,IgC1_MHC_II_alpha,ENSPTEG00000024859,HLA-DPA1,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,888664,888897,+,MHC_II_beta,ENSPTEG00000025389,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,ugandan.red.colobus,PDMG02001560.1,889337,889654,+,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTEG00000025389,HLA-DOB,protein_coding,aa_OG0012340,TRUE
MHCII,ugandan.red.colobus,PDMG02008079.1,21658,21942,+,IgC1_MHC_II_alpha,PDMG02008079.1_1:1,PDMG02008079.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02016476.1,6862,6987,+,MHC_II_alpha,PDMG02016476.1_1:1,PDMG02016476.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02016476.1,7418,7750,+,IgC1_MHC_II_alpha,PDMG02016476.1_1:1,PDMG02016476.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02017144.1,1566,1814,+,MHC_II_beta,ENSPTEG00000014884;111535153,NA;LOC111535153,protein_coding;mRNA,aa_OG0023070;aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02017144.1,4380,4679,+,IgC1_MHC_II_beta_HLA-DR,ENSPTEG00000014884;111535153,NA;LOC111535153,protein_coding;mRNA,aa_OG0023070;aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,17635,17934,-,IgC1_MHC_II_beta_HLA-DR,ENSPTEG00000011507;111535155,NA;LOC111535155,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,55574,55873,-,IgC1_MHC_II_beta_HLA-DR,ENSPTEG00000011586;111535154,NA;LOC111535154,protein_coding;pseudogene,aa_OG0021742;aa_OG0000002,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,58956,59216,-,MHC_II_beta,ENSPTEG00000011586;111535154,NA;LOC111535154,protein_coding;pseudogene,aa_OG0021742;aa_OG0000002,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,189276,189527,+,MHC_II_alpha,ENSPTEG00000011637,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,189866,190222,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPTEG00000011637,NA,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,199727,199789,-,IgC1_MHC_II_beta_HLA-DQ_I-A,PDMG02026225.1_1:1,PDMG02026225.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02026225.1,199792,199866,-,IgC1_MHC_II_beta_HLA-DQ_I-A,PDMG02026225.1_1:1,PDMG02026225.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02026225.1,202907,203230,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTEG00000011727,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02026225.1,205740,205949,-,MHC_II_beta,ENSPTEG00000011727,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,31326,31625,-,IgC1_MHC_II_beta_HLA-DR,ENSPTEG00000008722,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,33884,34114,-,MHC_II_beta,ENSPTEG00000008722,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,82828,83127,-,IgC1_MHC_II_beta_HLA-DR,ENSPTEG00000008722,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,85419,85667,-,MHC_II_beta,ENSPTEG00000008722,NA,protein_coding,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,178493,178759,+,MHC_II_alpha,ENSPTEG00000008809,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,179154,179453,+,IgC1_MHC_II_alpha_HLA-DQ,ENSPTEG00000008809,HLA-DQA1,protein_coding,aa_OG0000240,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,193962,194027,-,IgC1_MHC_II_beta_HLA-DQ_I-A,PDMG02027793.1_1:1,PDMG02027793.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02027793.1,194030,194107,-,IgC1_MHC_II_beta_HLA-DQ_I-A,PDMG02027793.1_1:1,PDMG02027793.1_1:1,NA,NA,FALSE
MHCII,ugandan.red.colobus,PDMG02027793.1,197183,197488,-,IgC1_MHC_II_beta_HLA-DQ_I-A,ENSPTEG00000011001;111535157,HLA-DQB1;LOC111535157,protein_coding;mRNA,aa_OG0000041,TRUE
MHCII,ugandan.red.colobus,PDMG02027793.1,200019,200231,-,MHC_II_beta,ENSPTEG00000011001;111535157,HLA-DQB1;LOC111535157,protein_coding;mRNA,aa_OG0000041,TRUE