Preview

immunogenomics-sc-h2-43133a1
- README.md
  
  1.1 kB
- RNA_processing
  - README.md
    
    341 Bytes
  - RNA_checks.py
    
    2.6 kB
  - d12_metadata.csv
    
    10.5 MB
  - process_RNA.py
    
    3.2 kB
  - regression_dependencies.py
    
    10.4 kB
- benchmarking
  - PBMC_process_regress.py
    
    10.5 kB
  - README.md
    
    325 Bytes
  - d12_RNA_only_regressions.py
    
    4.1 kB
  - d12_process_regress_atac_only.py
    
    5.3 kB
  - fixed_vs_random_regressions.py
    
    10.7 kB
- dynamic_peaks_characterization
  - README.md
    
    131 Bytes
  - characterize_dynamic_peaks.ipynb
    
    19.7 MB
  - ct_peak_set_gene_overlaps.py
    
    5.1 kB
  - dyn_vs_inv_peak_counts.py
    
    2.5 kB
  - regression_dependencies.py
    
    10.4 kB
- h2_post-hoc
  - AAI_GWAS.csv
    
    3.1 MB
  - README.md
    
    157 Bytes
  - calc_meta_tau_.r
    
    2.6 kB
  - cs-GWAS-TF-overlaps.py
    
    9.0 kB
  - make_h2_meta_plots.ipynb
    
    18.7 kB
  - regression_dependencies.py
    
    10.4 kB
- ldsc
  - CHANGELOG
    
    3.6 kB
  - LICENSE
    
    35.1 kB
  - README.md
    
    5.4 kB
  - environment.yml
    
    164 Bytes
  - ldsc.log
    
    483 Bytes
  - ldsc.py
    
    30.8 kB
  - ldscore
    - __init__.py
      
      0 Bytes
    - irwls.py
      
      6.1 kB
    - jackknife.py
      
      17.7 kB
    - ldscore.py
      
      14.5 kB
    - parse.py
      
      10.5 kB
    - regressions.py
      
      29.5 kB
    - sumstats.py
      
      23.7 kB
  - munge_sumstats.py
    
    30.3 kB
  - python
    
    0 Bytes
  - requirements.txt
    
    110 Bytes
  - run_SLDSC.sh
    
    1.0 kB
  - run_h2.sh
    
    1.7 kB
  - test
    - simulate.py
      
      2.5 kB
    - test_irwls.py
      
      2.3 kB
    - test_jackknife.py
      
      11.4 kB
    - test_ldscore.py
      
      3.7 kB
    - test_munge_sumstats.py
      
      12.2 kB
    - test_parse.py
      
      4.5 kB
    - test_regressions.py
      
      13.0 kB
    - test_sumstats.py
      
      17.0 kB
- regressions
  - README.md
    
    293 Bytes
  - modelLRT_QQ_plots.py
    
    1.5 kB
  - regression_dependencies.py
    
    10.4 kB
  - regressions_d12.py
    
    5.4 kB
  - run_regressions.sh
    
    584 Bytes
- stat_gen
  - README.md
    
    203 Bytes
  - bed_to_annot.py
    
    4.2 kB
  - define_cell_state_annots.ipynb
    
    11.2 kB
  - hg38ToHg19.over.chain
    
    3.9 MB
  - regression_dependencies.py
    
    10.4 kB
  - run_bed_to_annot.sh
    
    488 Bytes
  - scores_to_bed.py
    
    3.8 kB
  - scores_to_bed_to_hg19.sh
    
    1.3 kB

immunogenomics/sc-h2-v2.0.zip