{% import 'tablemacro.j2' as tm %} Lehtio proteomics QC report

QC for {{ searchname }}

Pipeline DOI: 10.5281/zenodo.3548311 (resolves to latest version)

Protein/peptide level QC

Summary

{{ tm.table(sumtable, tablefieldtitles) }}

Overlap

{% for feat in overlap %}
{{ featnames[feat] }}
{{ tm.table(overlap[feat], tablefieldtitles) }}
{% endfor %}

{% if ptm_summary %}

PTMs

Summary
{{ tm.table(ptmfeatc_summary, ptmtabletitles) }} {% if ptmoverlap %}
Overlap
{{ tm.table(ptmoverlap, ptmtabletitles) }} {% endif %}
Site count
{{ tm.table(ptm_summary, ptmtabletitles) }}

{% endif %} {% for graphtype in ["featyield", "isobaric", "pca"] %} {% if graphtype in features['peptides'] or ('proteins' in features and graphtype in features['proteins']) %}

{{ titles[graphtype] }} {% if graphtype == 'pca' %} {% elif graphtype == 'isobaric' %} {% endif %}

{% if graphtype == 'pca' %} {% elif graphtype == 'isobaric' %} {% endif %}
{% for feat in features %}
{{ featnames[feat] }}
{{ features[feat][graphtype] }}
{% endfor %} {% if graphtype == "isobaric" and 'normfac' in features['proteins'] %}
Median centering
{{ features['proteins']['normfac']}}
{% endif %}

{% endif %} {% endfor %}
{% if ptms|length %} {% include 'ptmqc.j2' %} {% endif %}