{
  "name": "Example Workflow",
  "task_list": [
    {
      "meta": {
        "cpus_per_task": 1,
        "mem": 4000
      },
      "args": {
        "num_levels": 5,
        "coarsening_xy": 2,
        "image_extension": "png",
        "allowed_channels": [
          {
            "color": "00FFFF",
            "wavelength_id": "A01_C01",
            "label": "DAPI",
            "window": {
              "start": 110,
              "end": 800
            }
          }
        ]
      },
      "task": {
        "source": "pip_remote:fractal_tasks_core:0.10.1:fractal-tasks::create_ome-zarr_structure"
      }
    },
    {
      "meta": {
        "cpus_per_task": 1,
        "mem": 4000,
        "parallelization_level": "image"
      },
      "args": null,
      "task": {
        "source": "pip_remote:fractal_tasks_core:0.10.1:fractal-tasks::convert_yokogawa_to_ome-zarr"
      }
    },
    {
      "meta": {
        "cpus_per_task": 1,
        "mem": 1000
      },
      "args": {
        "project_to_2D": true,
        "suffix": "mip",
        "ROI_table_names": [
          "FOV_ROI_table",
          "well_ROI_table"
        ]
      },
      "task": {
        "source": "pip_remote:fractal_tasks_core:0.10.1:fractal-tasks::copy_ome-zarr_structure"
      }
    },
    {
      "meta": {
        "cpus_per_task": 1,
        "mem": 4000,
        "parallelization_level": "image"
      },
      "args": null,
      "task": {
        "source": "pip_remote:fractal_tasks_core:0.10.1:fractal-tasks::maximum_intensity_projection"
      }
    },
    {
      "meta": {
        "cpus_per_task": 4,
        "mem": 16000,
        "needs_gpu": true,
        "parallelization_level": "image"
      },
      "args": {
        "input_ROI_table": "well_ROI_table",
        "use_masks": true,
        "relabeling": true,
        "diameter_level0": 60,
        "model_type": "nuclei",
        "cellprob_threshold": 0,
        "flow_threshold": 0.4,
        "min_size": 15,
        "augment": false,
        "net_avg": false,
        "use_gpu": true,
        "level": 2,
        "channel": {
          "wavelength_id": "A01_C01"
        },
        "output_label_name": "nuclei"
      },
      "task": {
        "source": "pip_remote:fractal_tasks_core:0.10.1:fractal-tasks::cellpose_segmentation"
      }
    }
  ]
}